Wall clock time and date at job start Wed Apr 1 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47086 * 2 1 4 4 N 1.46497 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.36933 * 119.99988 * 275.30988 * 4 3 2 6 6 H 1.08001 * 119.99995 * 37.58504 * 5 4 3 7 7 C 1.38812 * 120.00022 * 217.57686 * 5 4 3 8 8 N 1.31621 * 119.99916 * 21.42934 * 7 5 4 9 9 Si 1.86791 * 120.00214 * 201.42632 * 7 5 4 10 10 H 1.48498 * 109.47166 * 60.00142 * 9 7 5 11 11 H 1.48501 * 109.47349 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47351 * 300.00312 * 9 7 5 13 13 C 1.46504 * 119.99703 * 95.31246 * 4 3 2 14 14 C 1.53002 * 109.47079 * 269.99853 * 13 4 3 15 15 N 1.46494 * 109.47191 * 180.02562 * 14 13 4 16 16 C 1.34773 * 120.00195 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00131 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00263 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47362 * 180.02562 * 18 16 15 20 20 N 1.28730 * 121.08393 * 89.97189 * 19 18 16 21 21 S 1.69386 * 108.98535 * 180.02562 * 20 19 18 22 22 C 1.76520 * 96.11934 * 0.02562 * 21 20 19 23 23 C 1.38780 * 133.55833 * 180.02562 * 22 21 20 24 24 C 1.36714 * 119.75536 * 179.97438 * 23 22 21 25 25 C 1.38973 * 120.15745 * 0.02562 * 24 23 22 26 26 C 1.36042 * 121.15466 * 359.97438 * 25 24 23 27 27 C 1.40806 * 105.51671 * 0.22465 * 22 21 20 28 28 H 1.08993 * 109.47317 * 299.99880 * 1 2 3 29 29 H 1.09002 * 109.47267 * 60.00130 * 1 2 3 30 30 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46694 * 240.00531 * 2 1 3 32 32 H 1.09001 * 109.47131 * 120.00406 * 2 1 3 33 33 H 1.08999 * 109.46560 * 60.00014 * 3 2 1 34 34 H 1.09002 * 109.46962 * 300.00057 * 3 2 1 35 35 H 0.96996 * 120.00588 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47135 * 150.00125 * 13 4 3 37 37 H 1.09001 * 109.47390 * 29.99614 * 13 4 3 38 38 H 1.09001 * 109.46915 * 60.00138 * 14 13 4 39 39 H 1.09001 * 109.46814 * 300.00113 * 14 13 4 40 40 H 0.96996 * 120.00055 * 0.02562 * 15 14 13 41 41 H 1.08995 * 109.47201 * 59.99962 * 18 16 15 42 42 H 1.09001 * 109.47133 * 300.00001 * 18 16 15 43 43 H 1.07997 * 120.12151 * 359.96907 * 23 22 21 44 44 H 1.08000 * 119.92722 * 180.02562 * 24 23 22 45 45 H 1.07997 * 119.42462 * 180.02562 * 25 24 23 46 46 H 1.08000 * 119.89790 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.3330 1.1817 6 1 3.8169 0.6875 1.9635 7 6 5.3612 2.0514 1.3741 8 7 5.6019 3.1240 0.6503 9 14 6.5967 1.4961 2.6603 10 1 7.0656 0.1247 2.3366 11 1 7.7542 2.4263 2.6690 12 1 5.9523 1.4959 3.9982 13 6 4.2380 1.5598 -1.2624 14 6 4.4932 0.1643 -1.8354 15 7 5.2267 0.2815 -3.0981 16 6 5.5645 -0.8267 -3.7867 17 8 5.2608 -1.9211 -3.3612 18 6 6.3195 -0.7062 -5.0853 19 6 6.5708 -2.0807 -5.6498 20 7 5.7273 -2.6357 -6.4483 21 16 6.3105 -4.1631 -6.8911 22 6 7.7991 -4.0774 -5.9463 23 6 8.8631 -4.9480 -5.7569 24 6 9.8994 -4.5859 -4.9421 25 6 9.8879 -3.3508 -4.3050 26 6 8.8561 -2.4807 -4.4752 27 6 7.7671 -2.8238 -5.3059 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 6.4207 3.6263 0.7849 36 1 5.1903 2.0594 -1.0848 37 1 3.6491 2.1416 -1.9716 38 1 3.5409 -0.3353 -2.0131 39 1 5.0820 -0.4175 -1.1263 40 1 5.4699 1.1567 -3.4383 41 1 7.2717 -0.2066 -4.9070 42 1 5.7313 -0.1244 -5.7949 43 1 8.8723 -5.9081 -6.2513 44 1 10.7290 -5.2611 -4.7930 45 1 10.7129 -3.0767 -3.6642 46 1 8.8683 -1.5259 -3.9705 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493334501.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:29 Heat of formation + Delta-G solvation = 3.764141 kcal Electronic energy + Delta-G solvation = -27395.304209 eV Core-core repulsion = 23603.540430 eV Total energy + Delta-G solvation = -3791.763778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36307 -40.33736 -38.30737 -37.70899 -35.74428 -34.61074 -32.82125 -32.37078 -31.55097 -31.38857 -29.34668 -27.34293 -25.37024 -24.48965 -23.86389 -22.73418 -22.18407 -21.79554 -20.86834 -19.57508 -18.80037 -18.00474 -17.44948 -17.16273 -16.94837 -16.52033 -16.26241 -16.07045 -15.85496 -15.67258 -15.48481 -14.97195 -14.84751 -14.52722 -14.44513 -14.36957 -14.26104 -13.38519 -13.30971 -13.09737 -13.08286 -12.92317 -12.87572 -12.63904 -12.62765 -12.51543 -12.23338 -12.02422 -11.88914 -11.81202 -11.67736 -11.63836 -11.36112 -11.11095 -10.80896 -10.52200 -10.04998 -9.99456 -8.96454 -8.58003 -7.85033 -5.47911 -0.56068 0.16548 0.34835 0.67836 0.98389 1.46034 1.48696 1.55404 1.58055 2.22724 2.51702 2.63848 3.16554 3.22510 3.42400 3.67718 3.81171 3.97610 4.04367 4.17402 4.21390 4.27146 4.33435 4.34018 4.39277 4.44509 4.53384 4.61988 4.66955 4.73765 4.84944 4.89406 4.97931 5.00506 5.14959 5.22387 5.23052 5.24802 5.39473 5.40518 5.41619 5.51050 5.60419 5.66648 5.75087 5.80798 6.45461 6.57364 7.15195 7.24272 7.82902 8.35683 9.10948 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.002758 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.868082 B =10150.716815 C =11741.607903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.275 4.275 6 H 0.048 0.952 7 C -0.024 4.024 8 N -0.908 5.908 9 Si 0.950 3.050 10 H -0.285 1.285 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.146 3.854 14 C 0.121 3.879 15 N -0.707 5.707 16 C 0.515 3.485 17 O -0.587 6.587 18 C -0.073 4.073 19 C 0.177 3.823 20 N -0.466 5.466 21 S 0.163 5.837 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.072 4.072 25 C -0.123 4.123 26 C -0.061 4.061 27 C -0.148 4.148 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.030 0.970 40 H 0.417 0.583 41 H 0.156 0.844 42 H 0.142 0.858 43 H 0.155 0.845 44 H 0.173 0.827 45 H 0.162 0.838 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 -9.593 -15.085 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.405 4.405 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.551 5.551 9 Si 0.778 3.222 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.204 1.204 13 C 0.019 3.981 14 C -0.006 4.006 15 N -0.359 5.359 16 C 0.301 3.699 17 O -0.468 6.468 18 C -0.118 4.118 19 C -0.013 4.013 20 N -0.278 5.278 21 S 0.319 5.681 22 C -0.269 4.269 23 C -0.115 4.115 24 C -0.094 4.094 25 C -0.143 4.143 26 C -0.083 4.083 27 C -0.159 4.159 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.253 0.747 41 H 0.174 0.826 42 H 0.160 0.840 43 H 0.173 0.827 44 H 0.190 0.810 45 H 0.180 0.820 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.014 -10.893 -16.215 20.755 hybrid contribution 1.542 0.660 1.751 2.425 sum 8.556 -10.232 -14.464 19.675 Atomic orbital electron populations 1.21656 0.94291 1.01708 1.02051 1.22018 0.96412 0.98952 1.00086 1.21037 0.83527 0.94323 0.99073 1.43831 1.00771 1.85073 1.02086 1.19100 1.06477 1.20157 0.94750 0.93383 1.25716 1.01933 0.94619 0.99950 1.70067 1.26013 1.15314 1.43696 0.85632 0.79188 0.77516 0.79840 1.21186 1.21047 1.20351 1.20941 0.99355 0.91750 0.86080 1.21915 0.94116 1.01000 0.83522 1.45858 1.57302 1.09439 1.23313 1.20759 0.79282 0.83942 0.85948 1.90718 1.56515 1.28475 1.71070 1.20626 1.05084 0.91927 0.94118 1.22226 0.89433 0.97190 0.92460 1.75641 1.26505 1.06345 1.19273 1.84564 1.13169 1.18871 1.51517 1.23735 1.01094 0.98883 1.03170 1.20399 0.91667 0.99201 1.00214 1.21547 0.97995 0.96568 0.93273 1.21237 0.98958 0.93994 1.00074 1.21030 0.91170 1.01257 0.94837 1.20335 0.97377 0.94542 1.03669 0.92444 0.92099 0.92436 0.93912 0.94363 0.94601 0.93237 0.93533 0.90393 0.93717 0.94026 0.95198 0.74653 0.82616 0.84011 0.82714 0.80975 0.82021 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.91 71.98 0.71 -3.26 16 2 C -0.13 -4.98 6.23 30.60 0.19 -4.79 16 3 C 0.15 6.02 5.72 86.38 0.49 6.52 16 4 N -0.60 -28.76 2.43 -701.99 -1.71 -30.47 16 5 C -0.27 -14.73 9.45 84.03 0.79 -13.94 16 6 H 0.05 2.64 7.92 -2.91 -0.02 2.62 16 7 C -0.02 -1.26 4.95 84.86 0.42 -0.84 16 8 N -0.91 -49.40 11.47 21.65 0.25 -49.15 16 9 Si 0.95 43.23 29.60 68.60 2.03 45.26 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.15 6.30 5.45 86.38 0.47 6.77 16 14 C 0.12 4.87 6.00 86.38 0.52 5.39 16 15 N -0.71 -21.85 5.56 -463.07 -2.57 -24.42 16 16 C 0.52 16.40 7.82 87.66 0.69 17.08 16 17 O -0.59 -24.96 16.03 -3.04 -0.05 -25.01 16 18 C -0.07 -1.61 5.97 29.10 0.17 -1.44 16 19 C 0.18 4.91 5.37 44.74 0.24 5.15 16 20 N -0.47 -14.47 11.84 -46.34 -0.55 -15.02 16 21 S 0.16 4.40 23.86 -56.49 -1.35 3.05 16 22 C -0.15 -3.63 6.71 23.03 0.15 -3.47 16 23 C -0.09 -1.59 10.02 22.04 0.22 -1.37 16 24 C -0.07 -0.94 10.00 22.09 0.22 -0.72 16 25 C -0.12 -1.83 9.92 21.94 0.22 -1.61 16 26 C -0.06 -1.22 9.72 22.49 0.22 -1.00 16 27 C -0.15 -3.79 6.05 -20.20 -0.12 -3.91 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.64 6.64 -2.39 -0.02 1.63 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 34 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 35 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 36 H 0.08 3.76 5.52 -2.39 -0.01 3.75 16 37 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 38 H 0.04 1.76 6.64 -2.39 -0.02 1.74 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.42 9.88 8.47 -92.71 -0.79 9.10 16 41 H 0.16 2.16 7.54 -2.39 -0.02 2.14 16 42 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 45 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.14 2.39 7.64 -2.91 -0.02 2.37 16 Total: -1.00 -74.00 396.91 1.88 -72.13 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.21 Total: 19.08 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.61 Total: 4.56 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -4.58 Total: -119.06 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.05 Total: -25.01 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -1.35 Total: 3.05 kcal Total: -74.00 1.88 -72.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493334501.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.890 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds