Wall clock time and date at job start Wed Apr 1 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99799 * 2 1 4 4 O 1.20823 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47518 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47202 * 179.97438 * 6 5 3 8 8 C 1.36749 * 119.99890 * 90.00393 * 7 6 5 9 9 H 1.07997 * 120.00231 * 219.48340 * 8 7 6 10 10 C 1.39094 * 119.99806 * 39.75658 * 8 7 6 11 11 N 1.31347 * 120.00177 * 12.87208 * 10 8 7 12 12 Si 1.86804 * 119.99890 * 192.86435 * 10 8 7 13 13 H 1.48505 * 109.46807 * 90.00225 * 12 10 8 14 14 H 1.48498 * 109.47230 * 210.00447 * 12 10 8 15 15 H 1.48495 * 109.47172 * 330.00551 * 12 10 8 16 16 C 1.34778 * 119.99985 * 270.00158 * 7 6 5 17 17 O 1.21773 * 120.00214 * 5.87104 * 16 7 6 18 18 C 1.41807 * 119.99419 * 185.86958 * 16 7 6 19 19 C 1.35135 * 119.99418 * 173.14157 * 18 16 7 20 20 C 1.50702 * 120.00473 * 352.59446 * 19 18 16 21 21 C 1.46951 * 120.00176 * 172.59659 * 19 18 16 22 22 C 1.40015 * 120.11300 * 294.72417 * 21 19 18 23 23 C 1.37650 * 119.87737 * 179.80602 * 22 21 19 24 24 C 1.39024 * 120.12145 * 0.44513 * 23 22 21 25 25 O 1.35746 * 119.88382 * 179.76038 * 24 23 22 26 26 C 1.42890 * 116.99814 * 0.02562 * 25 24 23 27 27 C 1.39030 * 120.23405 * 359.78739 * 24 23 22 28 28 C 1.37663 * 120.11706 * 359.97438 * 27 24 23 29 29 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46981 * 300.00193 * 1 2 3 31 31 H 1.09003 * 109.47245 * 60.00340 * 1 2 3 32 32 H 1.09006 * 109.46591 * 59.99760 * 5 3 2 33 33 H 1.09000 * 109.46646 * 300.00509 * 5 3 2 34 34 H 1.09005 * 109.46717 * 60.00371 * 6 5 3 35 35 H 1.09000 * 109.47240 * 300.00845 * 6 5 3 36 36 H 0.97001 * 119.99855 * 184.99218 * 11 10 8 37 37 H 1.07997 * 120.00684 * 353.13709 * 18 16 7 38 38 H 1.09000 * 109.46931 * 84.11689 * 20 19 18 39 39 H 1.08992 * 109.47381 * 204.12056 * 20 19 18 40 40 H 1.08997 * 109.46978 * 324.12435 * 20 19 18 41 41 H 1.08003 * 120.05680 * 0.02562 * 22 21 19 42 42 H 1.08002 * 119.93698 * 180.20718 * 23 22 21 43 43 H 1.09006 * 109.47233 * 179.97438 * 26 25 24 44 44 H 1.08993 * 109.47337 * 299.99645 * 26 25 24 45 45 H 1.08999 * 109.47387 * 60.00045 * 26 25 24 46 46 H 1.07996 * 119.94592 * 179.97438 * 27 24 23 47 47 H 1.07987 * 120.05939 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1469 2.8538 -1.1827 9 1 7.0720 2.3067 -1.2883 10 6 5.6538 3.5986 -2.2490 11 7 4.6836 4.4623 -2.0538 12 14 6.3714 3.3707 -3.9585 13 1 5.6181 2.3097 -4.6742 14 1 6.2682 4.6456 -4.7128 15 1 7.7985 2.9753 -3.8476 16 6 6.1350 2.8550 1.1688 17 8 5.5366 2.7164 2.2202 18 6 7.5390 3.0544 1.1729 19 6 8.1931 3.2292 2.3424 20 6 7.4164 3.3795 3.6251 21 6 9.6618 3.2729 2.3635 22 6 10.4034 2.1368 2.0175 23 6 11.7790 2.1844 2.0351 24 6 12.4320 3.3548 2.4044 25 8 13.7887 3.3949 2.4247 26 6 14.4785 2.1994 2.0548 27 6 11.7003 4.4843 2.7535 28 6 10.3243 4.4491 2.7346 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9563 0.7806 -0.8892 33 1 3.9556 0.7810 0.8908 34 1 3.6100 3.2368 0.8894 35 1 3.6106 3.2358 -0.8906 36 1 4.2905 4.9286 -2.8080 37 1 8.0856 3.0664 0.2415 38 1 7.1671 2.3932 4.0165 39 1 8.0209 3.9179 4.3549 40 1 6.4994 3.9359 3.4315 41 1 9.8971 1.2260 1.7340 42 1 12.3520 1.3096 1.7652 43 1 15.5540 2.3676 2.1131 44 1 14.1992 1.3938 2.7337 45 1 14.2089 1.9251 1.0349 46 1 12.2124 5.3910 3.0401 47 1 9.7570 5.3268 3.0064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544785417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:09 Heat of formation + Delta-G solvation = -107.472097 kcal Electronic energy + Delta-G solvation = -29906.826813 eV Core-core repulsion = 25635.193848 eV Total energy + Delta-G solvation = -4271.632965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.11484 -40.02048 -38.97960 -37.59335 -36.19483 -35.27218 -33.62805 -31.94564 -31.10688 -30.87732 -29.24636 -27.75400 -27.32019 -26.91265 -25.09552 -23.69361 -22.66131 -22.21678 -20.44198 -19.61247 -18.69329 -18.15723 -17.28550 -16.39460 -16.26618 -16.15304 -16.10358 -16.04017 -15.83355 -15.08617 -14.57137 -14.28072 -14.11879 -13.93043 -13.70097 -13.57748 -13.38229 -13.10015 -12.85901 -12.73969 -12.38297 -12.26134 -12.12013 -12.07534 -11.87281 -11.61345 -11.37539 -11.24154 -11.16224 -11.00184 -10.91845 -10.80656 -10.54687 -10.51645 -10.39009 -10.04995 -9.96452 -9.20371 -8.98523 -8.60117 -8.34423 -7.84355 -7.53386 -6.36310 -4.18991 1.29187 1.43234 2.13394 2.69944 3.07555 3.12333 3.18604 3.18897 3.20182 3.80988 4.04313 4.37819 4.76433 4.79822 4.87639 4.96846 4.98708 5.02485 5.17767 5.25821 5.26221 5.32035 5.39401 5.40867 5.49341 5.65391 5.68599 5.80438 5.87579 5.99085 6.08281 6.11496 6.30343 6.33925 6.37057 6.40249 6.48362 6.68301 6.75219 6.77414 6.81620 6.90976 7.12409 7.26869 7.30539 7.37772 7.49967 7.86018 8.20901 8.31287 9.00839 9.43755 9.86875 10.59162 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.002647 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.757505 B =10573.943000 C =11902.547666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.122 4.122 6 C 0.121 3.879 7 N -0.430 5.430 8 C -0.339 4.339 9 H 0.092 0.908 10 C 0.043 3.957 11 N -0.855 5.855 12 Si 0.916 3.084 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.496 3.504 17 O -0.600 6.600 18 C -0.155 4.155 19 C -0.048 4.048 20 C -0.099 4.099 21 C -0.073 4.073 22 C -0.065 4.065 23 C -0.207 4.207 24 C 0.118 3.882 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.151 4.151 28 C -0.067 4.067 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.272 0.728 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.090 0.910 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.129 0.871 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 -6.349 4.728 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.161 4.161 6 C -0.003 4.003 7 N -0.147 5.147 8 C -0.467 4.467 9 H 0.109 0.891 10 C -0.164 4.164 11 N -0.491 5.491 12 Si 0.742 3.258 13 H -0.202 1.202 14 H -0.208 1.208 15 H -0.192 1.192 16 C 0.289 3.711 17 O -0.488 6.488 18 C -0.175 4.175 19 C -0.051 4.051 20 C -0.155 4.155 21 C -0.073 4.073 22 C -0.083 4.083 23 C -0.226 4.226 24 C 0.073 3.927 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.170 4.170 28 C -0.085 4.085 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.145 0.855 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.115 0.885 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.147 0.853 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.719 -5.758 5.133 11.641 hybrid contribution 0.120 -0.368 -1.299 1.356 sum 8.840 -6.126 3.834 11.418 Atomic orbital electron populations 1.23160 0.77458 1.02978 1.02310 1.86544 1.22687 1.34512 1.84696 1.24126 0.92448 0.80844 0.71678 1.90645 1.67277 1.36226 1.45075 1.21894 0.85658 1.03504 1.05077 1.21294 0.82439 0.90925 1.05621 1.43303 1.04605 1.61994 1.04784 1.19451 1.09008 1.28782 0.89431 0.89090 1.25497 0.97062 0.93241 1.00553 1.69790 1.25072 1.22291 1.31967 0.86103 0.79684 0.77912 0.82120 1.20177 1.20782 1.19217 1.17252 0.88187 0.81716 0.83901 1.90646 1.71193 1.55859 1.31145 1.22070 0.95475 1.02360 0.97632 1.20835 0.90537 0.97881 0.95886 1.20909 0.99528 1.02375 0.92733 1.18945 0.92868 0.93802 1.01692 1.21153 0.92668 0.97942 0.96514 1.21112 0.95522 0.97688 1.08236 1.19150 0.82091 0.94470 0.97012 1.86005 1.16311 1.37241 1.83839 1.23026 0.97081 0.86580 1.00052 1.20302 0.93311 0.97269 1.06082 1.21154 0.92909 0.97544 0.96934 0.88669 0.92209 0.92185 0.87885 0.88495 0.91843 0.86044 0.91760 0.85532 0.91238 0.94181 0.89191 0.85422 0.85556 0.88476 0.92715 0.92622 0.85311 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.07 10.57 -39.26 -0.41 -6.49 16 3 C 0.47 9.06 7.96 36.01 0.29 9.34 16 4 O -0.51 -11.10 15.73 -18.75 -0.29 -11.39 16 5 C -0.12 -2.45 6.13 -27.88 -0.17 -2.63 16 6 C 0.12 2.90 4.23 -4.05 -0.02 2.88 16 7 N -0.43 -10.47 2.51 -118.00 -0.30 -10.77 16 8 C -0.34 -8.22 8.30 -15.04 -0.12 -8.34 16 9 H 0.09 2.10 6.96 -52.49 -0.37 1.74 16 10 C 0.04 1.06 5.15 -17.44 -0.09 0.97 16 11 N -0.86 -22.33 11.09 55.50 0.62 -21.71 16 12 Si 0.92 18.95 29.58 -169.99 -5.03 13.92 16 13 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 16 C 0.50 11.69 7.26 -14.90 -0.11 11.58 16 17 O -0.60 -14.78 12.83 5.12 0.07 -14.71 16 18 C -0.16 -3.19 8.75 -39.32 -0.34 -3.53 16 19 C -0.05 -0.86 5.47 -102.20 -0.56 -1.42 16 20 C -0.10 -1.74 8.43 36.01 0.30 -1.44 16 21 C -0.07 -1.13 5.29 -105.04 -0.56 -1.68 16 22 C -0.06 -0.91 9.72 -39.13 -0.38 -1.29 16 23 C -0.21 -2.58 9.01 -39.50 -0.36 -2.94 16 24 C 0.12 1.52 6.70 -39.00 -0.26 1.26 16 25 O -0.32 -3.77 10.49 -18.95 -0.20 -3.97 16 26 C 0.03 0.21 9.81 101.05 0.99 1.21 16 27 C -0.15 -1.96 9.97 -39.50 -0.39 -2.36 16 28 C -0.07 -0.94 9.69 -39.13 -0.38 -1.32 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 33 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 34 H 0.06 1.62 7.46 -51.93 -0.39 1.23 16 35 H 0.12 3.16 5.29 -51.93 -0.27 2.89 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.13 2.59 6.52 -52.49 -0.34 2.25 16 38 H 0.07 1.23 8.00 -51.93 -0.42 0.82 16 39 H 0.04 0.59 7.99 -51.93 -0.42 0.18 16 40 H 0.09 1.81 6.22 -51.93 -0.32 1.49 16 41 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 42 H 0.13 1.25 6.27 -52.49 -0.33 0.92 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 45 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 46 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 397.86 15.07 6.00 6.00 Total: -1.00 -30.27 397.86 -7.23 -37.50 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.59 Total: 9.82 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.09 Total: 1.80 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.32 Total: -32.48 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.84 Total: -36.56 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.27 -7.23 -37.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544785417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.969 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds