Wall clock time and date at job start Wed Apr 1 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99799 * 2 1 4 4 O 1.20823 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00145 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47518 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47202 * 179.97438 * 6 5 3 8 8 C 1.36749 * 119.99890 * 90.00393 * 7 6 5 9 9 H 1.07997 * 120.00231 * 219.48340 * 8 7 6 10 10 C 1.39094 * 119.99806 * 39.75658 * 8 7 6 11 11 N 1.31347 * 120.00177 * 12.87208 * 10 8 7 12 12 Si 1.86804 * 119.99890 * 192.86435 * 10 8 7 13 13 H 1.48505 * 109.46807 * 90.00225 * 12 10 8 14 14 H 1.48498 * 109.47230 * 210.00447 * 12 10 8 15 15 H 1.48495 * 109.47172 * 330.00551 * 12 10 8 16 16 C 1.34778 * 119.99985 * 270.00158 * 7 6 5 17 17 O 1.21773 * 120.00214 * 5.87104 * 16 7 6 18 18 C 1.41807 * 119.99419 * 185.86958 * 16 7 6 19 19 C 1.35135 * 119.99418 * 173.14157 * 18 16 7 20 20 C 1.50702 * 120.00473 * 352.59446 * 19 18 16 21 21 C 1.46951 * 120.00176 * 172.59659 * 19 18 16 22 22 C 1.40015 * 120.11300 * 294.72417 * 21 19 18 23 23 C 1.37650 * 119.87737 * 179.80602 * 22 21 19 24 24 C 1.39024 * 120.12145 * 0.44513 * 23 22 21 25 25 O 1.35746 * 119.88382 * 179.76038 * 24 23 22 26 26 C 1.42890 * 116.99814 * 0.02562 * 25 24 23 27 27 C 1.39030 * 120.23405 * 359.78739 * 24 23 22 28 28 C 1.37663 * 120.11706 * 359.97438 * 27 24 23 29 29 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46981 * 300.00193 * 1 2 3 31 31 H 1.09003 * 109.47245 * 60.00340 * 1 2 3 32 32 H 1.09006 * 109.46591 * 59.99760 * 5 3 2 33 33 H 1.09000 * 109.46646 * 300.00509 * 5 3 2 34 34 H 1.09005 * 109.46717 * 60.00371 * 6 5 3 35 35 H 1.09000 * 109.47240 * 300.00845 * 6 5 3 36 36 H 0.97001 * 119.99855 * 184.99218 * 11 10 8 37 37 H 1.07997 * 120.00684 * 353.13709 * 18 16 7 38 38 H 1.09000 * 109.46931 * 84.11689 * 20 19 18 39 39 H 1.08992 * 109.47381 * 204.12056 * 20 19 18 40 40 H 1.08997 * 109.46978 * 324.12435 * 20 19 18 41 41 H 1.08003 * 120.05680 * 0.02562 * 22 21 19 42 42 H 1.08002 * 119.93698 * 180.20718 * 23 22 21 43 43 H 1.09006 * 109.47233 * 179.97438 * 26 25 24 44 44 H 1.08993 * 109.47337 * 299.99645 * 26 25 24 45 45 H 1.08999 * 109.47387 * 60.00045 * 26 25 24 46 46 H 1.07996 * 119.94592 * 179.97438 * 27 24 23 47 47 H 1.07987 * 120.05939 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1469 2.8538 -1.1827 9 1 7.0720 2.3067 -1.2883 10 6 5.6538 3.5986 -2.2490 11 7 4.6836 4.4623 -2.0538 12 14 6.3714 3.3707 -3.9585 13 1 5.6181 2.3097 -4.6742 14 1 6.2682 4.6456 -4.7128 15 1 7.7985 2.9753 -3.8476 16 6 6.1350 2.8550 1.1688 17 8 5.5366 2.7164 2.2202 18 6 7.5390 3.0544 1.1729 19 6 8.1931 3.2292 2.3424 20 6 7.4164 3.3795 3.6251 21 6 9.6618 3.2729 2.3635 22 6 10.4034 2.1368 2.0175 23 6 11.7790 2.1844 2.0351 24 6 12.4320 3.3548 2.4044 25 8 13.7887 3.3949 2.4247 26 6 14.4785 2.1994 2.0548 27 6 11.7003 4.4843 2.7535 28 6 10.3243 4.4491 2.7346 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9563 0.7806 -0.8892 33 1 3.9556 0.7810 0.8908 34 1 3.6100 3.2368 0.8894 35 1 3.6106 3.2358 -0.8906 36 1 4.2905 4.9286 -2.8080 37 1 8.0856 3.0664 0.2415 38 1 7.1671 2.3932 4.0165 39 1 8.0209 3.9179 4.3549 40 1 6.4994 3.9359 3.4315 41 1 9.8971 1.2260 1.7340 42 1 12.3520 1.3096 1.7652 43 1 15.5540 2.3676 2.1131 44 1 14.1992 1.3938 2.7337 45 1 14.2089 1.9251 1.0349 46 1 12.2124 5.3910 3.0401 47 1 9.7570 5.3268 3.0064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544785417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:09 Heat of formation + Delta-G solvation = -122.974083 kcal Electronic energy + Delta-G solvation = -29907.499030 eV Core-core repulsion = 25635.193848 eV Total energy + Delta-G solvation = -4272.305182 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57580 -41.12143 -40.63722 -38.69310 -37.68280 -36.99975 -35.10802 -33.77050 -32.61372 -32.11666 -30.35166 -29.08302 -28.36627 -28.06753 -26.91882 -25.24088 -23.84175 -23.32710 -21.91462 -21.27919 -20.28696 -19.10630 -18.80503 -18.06481 -17.94133 -17.60679 -17.54931 -17.06009 -16.62171 -16.59023 -16.06611 -15.77903 -15.63151 -15.37069 -14.99272 -14.73509 -14.57752 -14.40643 -14.24703 -14.17740 -13.82788 -13.71130 -13.40378 -13.30643 -13.12245 -12.98759 -12.82395 -12.78930 -12.68276 -12.51997 -12.22473 -12.04286 -11.92210 -11.88689 -11.78327 -11.73870 -11.59228 -11.04035 -10.21576 -10.07440 -9.95996 -9.43340 -8.94698 -8.21744 -6.10861 0.08227 0.41102 0.70133 1.13623 1.47329 1.48798 1.59593 1.70868 2.31870 2.39150 2.58389 2.75376 3.14913 3.17560 3.80884 3.86571 3.91253 3.95201 4.15162 4.23054 4.29983 4.31515 4.31632 4.32534 4.42946 4.43565 4.53267 4.62587 4.67823 4.69310 4.72448 4.77000 4.83126 4.91671 5.02729 5.09518 5.20890 5.27345 5.28818 5.33951 5.40542 5.49584 5.55857 5.68013 5.74922 5.82865 6.01652 6.42876 6.45200 6.70631 7.13324 7.59705 8.02352 8.74552 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.002647 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.757505 B =10573.943000 C =11902.547666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.112 4.112 6 C 0.128 3.872 7 N -0.445 5.445 8 C -0.345 4.345 9 H 0.101 0.899 10 C 0.000 4.000 11 N -0.895 5.895 12 Si 0.982 3.018 13 H -0.270 1.270 14 H -0.288 1.288 15 H -0.255 1.255 16 C 0.490 3.510 17 O -0.621 6.621 18 C -0.194 4.194 19 C -0.007 4.007 20 C -0.098 4.098 21 C -0.104 4.104 22 C -0.067 4.067 23 C -0.205 4.205 24 C 0.121 3.879 25 O -0.331 6.331 26 C 0.016 3.984 27 C -0.157 4.157 28 C -0.068 4.068 29 H 0.138 0.862 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.033 0.967 35 H 0.100 0.900 36 H 0.270 0.730 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.132 0.868 42 H 0.154 0.846 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.147 0.853 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.749 -7.929 4.600 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.151 4.151 6 C 0.004 3.996 7 N -0.162 5.162 8 C -0.472 4.472 9 H 0.119 0.881 10 C -0.203 4.203 11 N -0.532 5.532 12 Si 0.806 3.194 13 H -0.195 1.195 14 H -0.214 1.214 15 H -0.179 1.179 16 C 0.286 3.714 17 O -0.511 6.511 18 C -0.214 4.214 19 C -0.010 4.010 20 C -0.154 4.154 21 C -0.104 4.104 22 C -0.086 4.086 23 C -0.223 4.223 24 C 0.075 3.925 25 O -0.245 6.245 26 C -0.078 4.078 27 C -0.175 4.175 28 C -0.086 4.086 29 H 0.156 0.844 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.150 0.850 42 H 0.171 0.829 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.164 0.836 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.270 -7.377 5.011 14.372 hybrid contribution -0.546 0.088 -1.090 1.223 sum 10.724 -7.289 3.921 13.547 Atomic orbital electron populations 1.23583 0.74801 1.05876 1.02430 1.86510 1.25156 1.32395 1.83884 1.23859 0.92119 0.81263 0.71005 1.90635 1.67831 1.37478 1.46723 1.21651 0.86695 1.00920 1.05799 1.21021 0.82648 0.92999 1.02932 1.43475 1.04642 1.62852 1.05276 1.19757 1.09332 1.28691 0.89469 0.88123 1.26330 0.97203 0.92678 1.04050 1.69933 1.26777 1.23667 1.32854 0.85081 0.79528 0.77462 0.77353 1.19546 1.21415 1.17873 1.17744 0.89395 0.80886 0.83424 1.90620 1.71970 1.56850 1.31660 1.21850 0.93888 1.06984 0.98678 1.21079 0.92141 0.92904 0.94849 1.20869 0.98855 1.02242 0.93465 1.18883 0.91258 0.95464 1.04802 1.21244 0.93478 0.97628 0.96209 1.21345 0.94893 0.98631 1.07430 1.19336 0.82940 0.94405 0.95804 1.86006 1.15532 1.39356 1.83621 1.23365 0.98071 0.85641 1.00699 1.20515 0.92941 0.98246 1.05832 1.21232 0.93581 0.97207 0.96607 0.84357 0.92153 0.92130 0.86710 0.88032 0.94825 0.88215 0.91972 0.85708 0.91286 0.91112 0.92009 0.85038 0.82866 0.86140 0.91565 0.91891 0.83566 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.69 10.57 -51.43 -0.54 -12.23 16 3 C 0.47 18.72 7.96 71.24 0.57 19.29 16 4 O -0.54 -24.39 15.73 21.97 0.35 -24.05 16 5 C -0.11 -4.62 6.13 29.85 0.18 -4.44 16 6 C 0.13 6.46 4.23 86.38 0.37 6.83 16 7 N -0.45 -22.59 2.51 -645.43 -1.62 -24.21 16 8 C -0.34 -17.09 8.30 84.13 0.70 -16.40 16 9 H 0.10 4.68 6.96 -2.91 -0.02 4.66 16 10 C 0.00 0.00 5.15 84.97 0.44 0.44 16 11 N -0.89 -48.51 11.09 21.69 0.24 -48.27 16 12 Si 0.98 39.01 29.58 68.60 2.03 41.03 16 13 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 14 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 16 C 0.49 24.09 7.26 85.12 0.62 24.71 16 17 O -0.62 -31.98 12.83 -4.58 -0.06 -32.04 16 18 C -0.19 -8.17 8.75 22.44 0.20 -7.98 16 19 C -0.01 -0.24 5.47 -18.29 -0.10 -0.34 16 20 C -0.10 -3.45 8.43 71.24 0.60 -2.85 16 21 C -0.10 -3.10 5.29 -20.14 -0.11 -3.21 16 22 C -0.07 -1.78 9.72 22.56 0.22 -1.56 16 23 C -0.20 -4.53 9.01 22.32 0.20 -4.33 16 24 C 0.12 2.79 6.70 22.65 0.15 2.95 16 25 O -0.33 -6.78 10.49 -90.71 -0.95 -7.73 16 26 C 0.02 0.20 9.81 113.37 1.11 1.31 16 27 C -0.16 -3.72 9.97 22.32 0.22 -3.50 16 28 C -0.07 -1.80 9.69 22.56 0.22 -1.58 16 29 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.43 8.13 -2.38 -0.02 1.41 16 31 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 32 H 0.11 4.43 8.14 -2.38 -0.02 4.41 16 33 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 34 H 0.03 1.83 7.46 -2.38 -0.02 1.81 16 35 H 0.10 5.50 5.29 -2.39 -0.01 5.49 16 36 H 0.27 13.95 8.31 -92.71 -0.77 13.17 16 37 H 0.13 5.23 6.52 -2.91 -0.02 5.21 16 38 H 0.07 2.46 8.00 -2.39 -0.02 2.44 16 39 H 0.07 2.03 7.99 -2.39 -0.02 2.01 16 40 H 0.06 2.57 6.22 -2.39 -0.01 2.55 16 41 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 42 H 0.15 2.49 6.27 -2.91 -0.02 2.47 16 43 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.07 0.66 7.65 -2.39 -0.02 0.64 16 45 H 0.06 0.68 7.65 -2.39 -0.02 0.66 16 46 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 47 H 0.14 3.35 8.06 -2.92 -0.02 3.32 16 Total: -1.00 -68.20 397.86 7.21 -60.99 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.99 Total: 35.36 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.78 Total: 11.14 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.38 Total: -72.48 kcal Atomic # 8 Polarization: -74.84 SS G_CDS: -1.21 Total: -76.05 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.03 kcal Total: -68.20 7.21 -60.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544785417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.981 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds