Wall clock time and date at job start Wed Apr 1 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00298 * 2 1 4 4 O 1.42895 * 109.47315 * 135.00466 * 3 2 1 5 5 C 1.42897 * 114.00137 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47255 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47231 * 185.00026 * 6 5 4 8 8 N 1.46497 * 109.47076 * 64.99679 * 6 5 4 9 9 C 1.34774 * 120.00114 * 154.99785 * 8 6 5 10 10 O 1.21284 * 120.00116 * 0.02562 * 9 8 6 11 11 C 1.50707 * 120.00174 * 179.97438 * 9 8 6 12 12 C 1.53005 * 109.46755 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47137 * 55.00603 * 12 11 9 14 14 C 1.50694 * 109.47259 * 295.00142 * 12 11 9 15 15 H 1.07994 * 120.00199 * 325.85386 * 14 12 11 16 16 C 1.37876 * 119.99695 * 145.85519 * 14 12 11 17 17 N 1.31518 * 120.00347 * 6.11863 * 16 14 12 18 18 Si 1.86803 * 120.00076 * 186.11634 * 16 14 12 19 19 H 1.48496 * 109.47117 * 90.00055 * 18 16 14 20 20 H 1.48502 * 109.47275 * 210.00368 * 18 16 14 21 21 H 1.48502 * 109.46981 * 329.99995 * 18 16 14 22 22 C 1.50698 * 109.46662 * 174.99979 * 12 11 9 23 23 C 1.38237 * 120.00064 * 63.46033 * 22 12 11 24 24 C 1.38232 * 120.00425 * 179.78222 * 23 22 12 25 25 C 1.38241 * 119.99498 * 0.44823 * 24 23 22 26 26 C 1.38228 * 120.00124 * 359.80680 * 25 24 23 27 27 C 1.38232 * 120.00079 * 359.97438 * 26 25 24 28 28 C 1.50702 * 109.47112 * 304.99885 * 6 5 4 29 29 O 1.20826 * 120.00083 * 119.99977 * 28 6 5 30 30 O 1.34228 * 119.99857 * 299.99892 * 28 6 5 31 31 H 1.08004 * 120.00104 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00341 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00104 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.46815 * 15.00577 * 3 2 1 35 35 H 1.09001 * 109.47057 * 255.00678 * 3 2 1 36 36 H 1.09000 * 109.47242 * 59.99671 * 5 4 3 37 37 H 1.08997 * 109.47025 * 299.99358 * 5 4 3 38 38 H 0.97003 * 120.00154 * 335.00492 * 8 6 5 39 39 H 1.08994 * 109.47077 * 300.00462 * 11 9 8 40 40 H 1.09000 * 109.46569 * 60.01057 * 11 9 8 41 41 H 0.96999 * 120.00212 * 180.02562 * 17 16 14 42 42 H 1.07999 * 119.99773 * 359.97438 * 23 22 12 43 43 H 1.07996 * 120.00599 * 180.27240 * 24 23 22 44 44 H 1.08002 * 119.99495 * 179.82813 * 25 24 23 45 45 H 1.08009 * 119.99952 * 179.97438 * 26 25 24 46 46 H 1.08006 * 120.00051 * 179.97438 * 27 26 25 47 47 H 0.96704 * 116.99998 * 179.97438 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9525 5 6 3.9078 2.4351 1.0327 6 6 5.0101 2.2543 2.0784 7 1 5.5497 3.1930 2.2036 8 7 5.9390 1.2126 1.6335 9 6 7.2105 1.2079 2.0803 10 8 7.5856 2.0659 2.8511 11 6 8.1660 0.1359 1.6231 12 6 9.5326 0.3595 2.2739 13 1 9.4163 0.4050 3.3567 14 6 10.1197 1.6553 1.7768 15 1 9.9339 1.9787 0.7633 16 6 10.8941 2.4280 2.6161 17 7 11.2204 1.9793 3.8085 18 14 11.4798 4.1122 2.0594 19 1 10.4778 5.1376 2.4465 20 1 12.7805 4.4225 2.7054 21 1 11.6467 4.1155 0.5838 22 6 10.4522 -0.7791 1.9149 23 6 10.8081 -0.9906 0.5959 24 6 11.6552 -2.0322 0.2670 25 6 12.1391 -2.8682 1.2561 26 6 11.7790 -2.6599 2.5743 27 6 10.9355 -1.6155 2.9037 28 6 4.3940 1.8499 3.3929 29 8 4.6996 0.7993 3.9055 30 8 3.5058 2.6569 3.9943 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3856 2.1160 0.2661 35 1 2.4754 1.4868 -0.9927 36 1 3.2679 3.2693 1.3204 37 1 4.3581 2.6406 0.0616 38 1 5.6390 0.5261 1.0172 39 1 7.7813 -0.8417 1.9135 40 1 8.2683 0.1788 0.5388 41 1 11.7649 2.5231 4.3990 42 1 10.4268 -0.3400 -0.1772 43 1 11.9368 -2.1948 -0.7628 44 1 12.7987 -3.6837 0.9988 45 1 12.1567 -3.3133 3.3470 46 1 10.6538 -1.4531 3.9336 47 1 3.1374 2.3546 4.8358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573368598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:02 Heat of formation + Delta-G solvation = -125.591899 kcal Electronic energy + Delta-G solvation = -30450.757576 eV Core-core repulsion = 26178.338877 eV Total energy + Delta-G solvation = -4272.418699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.45434 -38.90283 -38.41067 -38.03471 -35.96307 -34.94535 -33.99303 -33.60118 -31.47875 -30.26446 -29.95527 -28.48338 -26.37327 -25.43025 -24.44733 -22.86169 -21.63154 -21.20669 -20.29021 -20.10494 -19.25900 -18.06428 -17.33862 -16.71628 -16.65838 -16.35753 -16.30862 -15.79801 -15.42675 -15.23893 -14.85967 -14.45341 -14.17659 -14.00451 -13.87268 -13.68371 -13.16452 -13.01785 -12.72971 -12.52860 -12.44163 -12.26116 -12.01538 -11.84993 -11.71067 -11.56160 -11.34593 -11.27978 -10.85981 -10.68737 -10.56198 -10.49896 -10.22404 -10.20936 -10.02153 -9.66919 -9.41873 -9.09669 -8.90141 -8.81275 -8.30777 -7.99727 -7.56171 -5.90115 -3.90107 1.79801 2.33685 2.39016 2.40871 2.85761 3.37526 3.39709 3.45308 3.46090 3.51382 3.71420 4.45624 4.53949 4.72558 4.77473 4.79910 4.94196 5.03464 5.06546 5.17442 5.26142 5.44869 5.48071 5.52141 5.70205 5.77372 5.81051 5.89208 6.15145 6.21653 6.24055 6.27860 6.33926 6.45937 6.58031 6.61742 6.66049 6.80306 6.84726 6.95701 7.09043 7.35607 7.49527 7.57621 7.88744 7.99320 7.99983 8.04233 8.10888 8.41800 9.01010 9.10484 9.71732 11.20058 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.003077 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.256513 B = 9098.286853 C =10504.029310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.090 3.910 4 O -0.383 6.383 5 C 0.060 3.940 6 C 0.166 3.834 7 H 0.138 0.862 8 N -0.725 5.725 9 C 0.520 3.480 10 O -0.492 6.492 11 C -0.119 4.119 12 C 0.080 3.920 13 H 0.072 0.928 14 C -0.493 4.493 15 H 0.051 0.949 16 C 0.078 3.922 17 N -0.880 5.880 18 Si 0.886 3.114 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.020 4.020 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.118 4.118 28 C 0.472 3.528 29 O -0.497 6.497 30 O -0.522 6.522 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.259 0.741 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.981 -2.643 -8.035 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.168 4.168 3 C 0.014 3.986 4 O -0.302 6.302 5 C -0.017 4.017 6 C 0.058 3.942 7 H 0.155 0.845 8 N -0.382 5.382 9 C 0.308 3.692 10 O -0.362 6.362 11 C -0.160 4.160 12 C 0.061 3.939 13 H 0.090 0.910 14 C -0.531 4.531 15 H 0.069 0.931 16 C -0.125 4.125 17 N -0.517 5.517 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.216 1.216 21 H -0.201 1.201 22 C -0.021 4.021 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.146 4.146 27 C -0.136 4.136 28 C 0.311 3.689 29 O -0.382 6.382 30 O -0.333 6.333 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.239 0.761 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.132 0.868 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.254 -2.271 -7.387 18.906 hybrid contribution 0.040 0.643 -0.045 0.646 sum -17.215 -1.627 -7.433 18.821 Atomic orbital electron populations 1.23835 0.95575 1.02261 1.00194 1.22764 0.95660 0.98315 1.00094 1.21554 0.88702 0.95988 0.92399 1.87956 1.44793 1.36589 1.60879 1.22762 0.91952 0.88451 0.98537 1.20339 0.90283 0.95752 0.87859 0.84474 1.46006 1.10327 1.31368 1.50542 1.21042 0.80827 0.87009 0.80352 1.90763 1.75855 1.37128 1.32462 1.21780 0.97163 0.95285 1.01730 1.17840 0.86062 0.90994 0.99027 0.90981 1.20685 1.31326 1.03183 0.97881 0.93080 1.24821 0.95530 0.97370 0.94779 1.69920 1.36706 1.36916 1.08157 0.86699 0.77793 0.85486 0.78543 1.20687 1.21560 1.20120 1.20721 0.96543 0.92795 0.92036 1.20938 0.98658 0.96913 0.96838 1.20966 0.99187 0.96710 0.98162 1.20789 1.02514 1.00599 0.93502 1.20980 0.99237 0.98608 0.95790 1.21098 0.98411 0.94666 0.99458 1.23964 0.75954 0.81826 0.87192 1.90712 1.58588 1.24253 1.64644 1.84488 1.56328 1.52163 1.40332 0.88461 0.87795 0.86408 0.92582 0.91937 0.90530 0.90650 0.76065 0.91297 0.90329 0.93152 0.86896 0.87697 0.87842 0.87663 0.86841 0.73545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 14.31 29.02 0.42 -0.79 16 2 C -0.15 -1.20 9.89 -36.02 -0.36 -1.55 16 3 C 0.09 0.70 6.35 36.01 0.23 0.93 16 4 O -0.38 -4.04 9.54 -35.23 -0.34 -4.38 16 5 C 0.06 0.57 5.61 37.16 0.21 0.78 16 6 C 0.17 2.27 2.89 -69.08 -0.20 2.07 16 7 H 0.14 1.94 7.58 -51.93 -0.39 1.54 16 8 N -0.73 -11.18 4.59 -54.93 -0.25 -11.43 16 9 C 0.52 10.52 7.41 -10.98 -0.08 10.44 16 10 O -0.49 -12.26 14.65 5.55 0.08 -12.18 16 11 C -0.12 -2.36 4.95 -27.88 -0.14 -2.50 16 12 C 0.08 1.94 1.67 -92.93 -0.16 1.78 16 13 H 0.07 2.04 6.98 -51.93 -0.36 1.67 16 14 C -0.49 -13.22 6.37 -34.44 -0.22 -13.44 16 15 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 16 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 17 N -0.88 -26.12 12.87 55.43 0.71 -25.41 16 18 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 23 C -0.12 -2.35 8.86 -39.58 -0.35 -2.71 16 24 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 25 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16 26 C -0.13 -2.43 10.05 -39.59 -0.40 -2.83 16 27 C -0.12 -2.57 9.67 -39.58 -0.38 -2.96 16 28 C 0.47 7.26 7.18 36.01 0.26 7.52 16 29 O -0.50 -9.56 17.08 -18.75 -0.32 -9.88 16 30 O -0.52 -6.15 13.35 -39.25 -0.52 -6.67 16 31 H 0.10 0.54 7.90 -52.48 -0.41 0.13 16 32 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 34 H 0.06 0.38 7.86 -51.93 -0.41 -0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.40 5.25 8.38 -40.82 -0.34 4.91 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.39 7.78 -51.93 -0.40 0.98 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.11 2.20 7.76 -52.49 -0.41 1.79 16 43 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 45 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 46 H 0.11 2.52 7.95 -52.48 -0.42 2.10 16 47 H 0.41 3.24 9.10 45.56 0.41 3.66 16 LS Contribution 408.73 15.07 6.16 6.16 Total: -1.00 -36.14 408.73 -8.15 -44.28 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.09 Total: 10.44 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.56 Total: -8.05 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.46 Total: -36.84 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.10 Total: -33.10 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.14 -8.15 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573368598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.309 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds