Wall clock time and date at job start Wed Apr 1 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00298 * 2 1 4 4 O 1.42895 * 109.47315 * 135.00466 * 3 2 1 5 5 C 1.42897 * 114.00137 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47255 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47231 * 185.00026 * 6 5 4 8 8 N 1.46497 * 109.47076 * 64.99679 * 6 5 4 9 9 C 1.34774 * 120.00114 * 154.99785 * 8 6 5 10 10 O 1.21284 * 120.00116 * 0.02562 * 9 8 6 11 11 C 1.50707 * 120.00174 * 179.97438 * 9 8 6 12 12 C 1.53005 * 109.46755 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47137 * 55.00603 * 12 11 9 14 14 C 1.50694 * 109.47259 * 295.00142 * 12 11 9 15 15 H 1.07994 * 120.00199 * 325.85386 * 14 12 11 16 16 C 1.37876 * 119.99695 * 145.85519 * 14 12 11 17 17 N 1.31518 * 120.00347 * 6.11863 * 16 14 12 18 18 Si 1.86803 * 120.00076 * 186.11634 * 16 14 12 19 19 H 1.48496 * 109.47117 * 90.00055 * 18 16 14 20 20 H 1.48502 * 109.47275 * 210.00368 * 18 16 14 21 21 H 1.48502 * 109.46981 * 329.99995 * 18 16 14 22 22 C 1.50698 * 109.46662 * 174.99979 * 12 11 9 23 23 C 1.38237 * 120.00064 * 63.46033 * 22 12 11 24 24 C 1.38232 * 120.00425 * 179.78222 * 23 22 12 25 25 C 1.38241 * 119.99498 * 0.44823 * 24 23 22 26 26 C 1.38228 * 120.00124 * 359.80680 * 25 24 23 27 27 C 1.38232 * 120.00079 * 359.97438 * 26 25 24 28 28 C 1.50702 * 109.47112 * 304.99885 * 6 5 4 29 29 O 1.20826 * 120.00083 * 119.99977 * 28 6 5 30 30 O 1.34228 * 119.99857 * 299.99892 * 28 6 5 31 31 H 1.08004 * 120.00104 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.00341 * 180.02562 * 1 2 3 33 33 H 1.08004 * 120.00104 * 180.02562 * 2 1 3 34 34 H 1.08999 * 109.46815 * 15.00577 * 3 2 1 35 35 H 1.09001 * 109.47057 * 255.00678 * 3 2 1 36 36 H 1.09000 * 109.47242 * 59.99671 * 5 4 3 37 37 H 1.08997 * 109.47025 * 299.99358 * 5 4 3 38 38 H 0.97003 * 120.00154 * 335.00492 * 8 6 5 39 39 H 1.08994 * 109.47077 * 300.00462 * 11 9 8 40 40 H 1.09000 * 109.46569 * 60.01057 * 11 9 8 41 41 H 0.96999 * 120.00212 * 180.02562 * 17 16 14 42 42 H 1.07999 * 119.99773 * 359.97438 * 23 22 12 43 43 H 1.07996 * 120.00599 * 180.27240 * 24 23 22 44 44 H 1.08002 * 119.99495 * 179.82813 * 25 24 23 45 45 H 1.08009 * 119.99952 * 179.97438 * 26 25 24 46 46 H 1.08006 * 120.00051 * 179.97438 * 27 26 25 47 47 H 0.96704 * 116.99998 * 179.97438 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9525 5 6 3.9078 2.4351 1.0327 6 6 5.0101 2.2543 2.0784 7 1 5.5497 3.1930 2.2036 8 7 5.9390 1.2126 1.6335 9 6 7.2105 1.2079 2.0803 10 8 7.5856 2.0659 2.8511 11 6 8.1660 0.1359 1.6231 12 6 9.5326 0.3595 2.2739 13 1 9.4163 0.4050 3.3567 14 6 10.1197 1.6553 1.7768 15 1 9.9339 1.9787 0.7633 16 6 10.8941 2.4280 2.6161 17 7 11.2204 1.9793 3.8085 18 14 11.4798 4.1122 2.0594 19 1 10.4778 5.1376 2.4465 20 1 12.7805 4.4225 2.7054 21 1 11.6467 4.1155 0.5838 22 6 10.4522 -0.7791 1.9149 23 6 10.8081 -0.9906 0.5959 24 6 11.6552 -2.0322 0.2670 25 6 12.1391 -2.8682 1.2561 26 6 11.7790 -2.6599 2.5743 27 6 10.9355 -1.6155 2.9037 28 6 4.3940 1.8499 3.3929 29 8 4.6996 0.7993 3.9055 30 8 3.5058 2.6569 3.9943 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3856 2.1160 0.2661 35 1 2.4754 1.4868 -0.9927 36 1 3.2679 3.2693 1.3204 37 1 4.3581 2.6406 0.0616 38 1 5.6390 0.5261 1.0172 39 1 7.7813 -0.8417 1.9135 40 1 8.2683 0.1788 0.5388 41 1 11.7649 2.5231 4.3990 42 1 10.4268 -0.3400 -0.1772 43 1 11.9368 -2.1948 -0.7628 44 1 12.7987 -3.6837 0.9988 45 1 12.1567 -3.3133 3.3470 46 1 10.6538 -1.4531 3.9336 47 1 3.1374 2.3546 4.8358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573368598.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:01 Heat of formation + Delta-G solvation = -150.514471 kcal Electronic energy + Delta-G solvation = -30451.838300 eV Core-core repulsion = 26178.338877 eV Total energy + Delta-G solvation = -4273.499423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68840 -40.42431 -39.66927 -39.09928 -37.15039 -36.15531 -35.61085 -34.52291 -33.42029 -31.55151 -31.45870 -29.94552 -27.47361 -26.89319 -25.38649 -24.57533 -23.15872 -22.45545 -21.52768 -21.01342 -20.76802 -19.19374 -18.52032 -18.38282 -17.96267 -17.63308 -17.26859 -17.08959 -16.62140 -16.44640 -16.26144 -15.85581 -15.69211 -15.53385 -15.32191 -14.76073 -14.38215 -14.30751 -14.06232 -13.96995 -13.63512 -13.51647 -13.45939 -13.19438 -13.09874 -12.82560 -12.79686 -12.54132 -12.49903 -12.42745 -11.89202 -11.82010 -11.73611 -11.68271 -11.30497 -10.96071 -10.91474 -10.68923 -10.39872 -10.22687 -10.18485 -9.53357 -9.18051 -8.01303 -6.04869 0.78791 0.85060 1.20480 1.25092 1.38556 1.42750 1.48098 1.63393 2.10336 2.41238 2.48890 2.66778 3.20140 3.38457 3.63018 4.00143 4.11595 4.16417 4.23994 4.25913 4.33888 4.36705 4.41695 4.44822 4.48315 4.55938 4.61037 4.65159 4.65628 4.75401 4.93575 5.00091 5.00753 5.22241 5.38419 5.39256 5.53550 5.57852 5.65724 5.69042 5.73579 5.80561 5.84580 5.96074 6.14370 6.18952 6.42923 6.47681 6.64810 6.94488 7.03421 7.48942 7.58632 9.08707 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010142 B = 0.003077 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.256513 B = 9098.286853 C =10504.029310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.174 4.174 3 C 0.087 3.913 4 O -0.406 6.406 5 C 0.070 3.930 6 C 0.158 3.842 7 H 0.133 0.867 8 N -0.707 5.707 9 C 0.520 3.480 10 O -0.549 6.549 11 C -0.115 4.115 12 C 0.083 3.917 13 H 0.017 0.983 14 C -0.484 4.484 15 H 0.054 0.946 16 C 0.020 3.980 17 N -0.921 5.921 18 Si 0.939 3.061 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.259 1.259 22 C -0.046 4.046 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.148 4.148 26 C -0.129 4.129 27 C -0.147 4.147 28 C 0.473 3.527 29 O -0.545 6.545 30 O -0.507 6.507 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.418 0.582 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.252 0.748 42 H 0.120 0.880 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.088 0.912 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.830 -3.187 -11.223 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.193 4.193 3 C 0.012 3.988 4 O -0.327 6.327 5 C -0.007 4.007 6 C 0.050 3.950 7 H 0.150 0.850 8 N -0.363 5.363 9 C 0.308 3.692 10 O -0.424 6.424 11 C -0.155 4.155 12 C 0.064 3.936 13 H 0.036 0.964 14 C -0.522 4.522 15 H 0.073 0.927 16 C -0.178 4.178 17 N -0.560 5.560 18 Si 0.766 3.234 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.183 1.183 22 C -0.047 4.047 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.166 4.166 26 C -0.147 4.147 27 C -0.165 4.165 28 C 0.314 3.686 29 O -0.435 6.435 30 O -0.320 6.320 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.255 0.745 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.061 0.939 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.148 0.852 46 H 0.107 0.893 47 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -18.175 -2.819 -10.627 21.242 hybrid contribution 0.154 0.706 0.941 1.186 sum -18.021 -2.113 -9.686 20.568 Atomic orbital electron populations 1.24037 0.95223 1.03302 0.98300 1.22828 0.96265 0.98248 1.01912 1.21711 0.88278 0.96263 0.92550 1.87924 1.45694 1.37069 1.61976 1.22760 0.91044 0.88837 0.98044 1.20647 0.91157 0.94506 0.88701 0.84955 1.45701 1.09154 1.31866 1.49585 1.21099 0.82277 0.86245 0.79600 1.90742 1.77306 1.39291 1.35065 1.21672 0.95047 0.95946 1.02837 1.17608 0.88760 0.91239 0.95992 0.96422 1.20998 1.29575 1.04013 0.97573 0.92745 1.25560 0.96574 1.00640 0.95072 1.70089 1.38464 1.37994 1.09480 0.85847 0.76884 0.81666 0.78968 1.21283 1.21754 1.18276 1.20575 0.97302 0.93213 0.93564 1.21059 0.99518 0.98112 0.95699 1.21390 0.97459 0.95201 1.00254 1.21264 1.01788 1.01046 0.92470 1.21268 0.98140 0.97729 0.97588 1.21096 1.00405 0.96644 0.98362 1.24289 0.75645 0.81210 0.87453 1.90699 1.60416 1.26400 1.65960 1.84438 1.55232 1.51041 1.41282 0.87157 0.87051 0.87443 0.91188 0.90453 0.88203 0.88323 0.74454 0.89876 0.87635 0.93914 0.86168 0.83893 0.83824 0.85238 0.89332 0.71502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 14.31 67.79 0.97 -0.97 16 2 C -0.17 -2.53 9.89 25.65 0.25 -2.27 16 3 C 0.09 1.16 6.35 71.24 0.45 1.62 16 4 O -0.41 -7.82 9.54 -148.98 -1.42 -9.24 16 5 C 0.07 1.17 5.61 71.98 0.40 1.57 16 6 C 0.16 4.23 2.89 44.25 0.13 4.35 16 7 H 0.13 3.74 7.58 -2.39 -0.02 3.72 16 8 N -0.71 -21.67 4.59 -446.09 -2.05 -23.72 16 9 C 0.52 21.61 7.41 87.66 0.65 22.26 16 10 O -0.55 -28.75 14.65 -3.04 -0.04 -28.79 16 11 C -0.12 -4.63 4.95 29.85 0.15 -4.48 16 12 C 0.08 4.22 1.67 -12.29 -0.02 4.20 16 13 H 0.02 1.07 6.98 -2.39 -0.02 1.05 16 14 C -0.48 -26.60 6.37 25.60 0.16 -26.44 16 15 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 16 C 0.02 1.16 5.45 84.65 0.46 1.63 16 17 N -0.92 -57.73 12.87 21.45 0.28 -57.46 16 18 Si 0.94 46.50 29.54 68.60 2.03 48.52 16 19 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 C -0.05 -2.12 4.77 -19.87 -0.09 -2.21 16 23 C -0.13 -4.95 8.86 22.27 0.20 -4.76 16 24 C -0.13 -4.12 10.05 22.27 0.22 -3.89 16 25 C -0.15 -4.73 10.05 22.27 0.22 -4.50 16 26 C -0.13 -4.75 10.05 22.27 0.22 -4.52 16 27 C -0.15 -6.61 9.67 22.27 0.22 -6.40 16 28 C 0.47 14.58 7.18 71.24 0.51 15.09 16 29 O -0.55 -21.63 17.08 21.97 0.38 -21.26 16 30 O -0.51 -11.48 13.35 -51.40 -0.69 -12.17 16 31 H 0.11 0.94 7.90 -2.91 -0.02 0.92 16 32 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.07 0.73 7.86 -2.39 -0.02 0.71 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.42 10.46 8.38 -92.71 -0.78 9.68 16 39 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.11 3.62 7.78 -2.39 -0.02 3.60 16 41 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.12 4.45 7.76 -2.91 -0.02 4.43 16 43 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 45 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 46 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16 47 H 0.42 6.40 9.10 -74.05 -0.67 5.72 16 Total: -1.00 -83.89 408.73 3.13 -80.77 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.46 Total: 33.08 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.11 Total: -9.74 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.77 Total: -81.18 kcal Atomic # 8 Polarization: -69.68 SS G_CDS: -1.78 Total: -71.46 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -83.89 3.13 -80.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573368598.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.748 kcal (2) G-P(sol) polarization free energy of solvation -83.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds