Wall clock time and date at job start Wed Apr 1 2020 04:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47157 * 2 1 4 4 H 1.09002 * 109.47059 * 305.00132 * 3 2 1 5 5 C 1.50695 * 109.47101 * 184.99399 * 3 2 1 6 6 H 1.08001 * 120.00532 * 240.00044 * 5 3 2 7 7 C 1.37881 * 119.99593 * 60.00634 * 5 3 2 8 8 N 1.31507 * 120.00321 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99677 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47191 * 60.00196 * 9 7 5 11 11 H 1.48508 * 109.46894 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47130 * 299.99489 * 9 7 5 13 13 N 1.46505 * 109.47119 * 64.99893 * 3 2 1 14 14 C 1.34783 * 119.99802 * 275.00309 * 13 3 2 15 15 O 1.21592 * 119.99685 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99973 * 180.02562 * 14 13 3 17 17 C 1.40200 * 119.99837 * 184.67186 * 16 14 13 18 18 C 1.38776 * 120.36191 * 145.00696 * 17 16 14 19 19 N 1.31943 * 120.99375 * 180.02562 * 18 17 16 20 20 C 1.32135 * 121.84105 * 359.97438 * 19 18 17 21 21 O 1.35681 * 119.68618 * 180.27482 * 20 19 18 22 22 C 1.42901 * 117.00253 * 359.72546 * 21 20 19 23 23 C 1.39908 * 120.61688 * 359.97438 * 20 19 18 24 24 C 1.48394 * 120.51666 * 179.97438 * 23 20 19 25 25 N 1.34069 * 126.67402 * 179.68715 * 24 23 20 26 26 N 1.28988 * 107.26621 * 179.83768 * 25 24 23 27 27 N 1.28730 * 108.94901 * 0.43365 * 26 25 24 28 28 H 0.97001 * 125.34249 * 179.73692 * 27 26 25 29 29 N 1.28874 * 109.32467 * 359.72603 * 27 26 25 30 30 C 1.39099 * 120.36373 * 325.01963 * 17 16 14 31 31 H 1.08998 * 109.47325 * 300.00064 * 1 2 3 32 32 H 1.09004 * 109.46461 * 60.00185 * 1 2 3 33 33 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47325 * 239.99935 * 2 1 3 35 35 H 1.09004 * 109.46874 * 120.00159 * 2 1 3 36 36 H 0.96996 * 120.00471 * 180.02562 * 8 7 5 37 37 H 0.96992 * 120.00004 * 94.99439 * 13 3 2 38 38 H 0.96999 * 119.99543 * 4.66532 * 16 14 13 39 39 H 1.07993 * 119.50501 * 0.02562 * 18 17 16 40 40 H 1.09000 * 109.47765 * 300.00103 * 22 21 20 41 41 H 1.09004 * 109.47164 * 60.00277 * 22 21 20 42 42 H 1.09000 * 109.47132 * 179.97438 * 22 21 20 43 43 H 1.07990 * 120.84124 * 359.96684 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6525 7 6 4.1433 0.8784 -1.2279 8 7 3.4064 0.3367 -2.1728 9 14 6.0050 0.8812 -1.3815 10 1 6.5975 0.1472 -0.2347 11 1 6.3980 0.2167 -2.6502 12 1 6.4995 2.2814 -1.3819 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3412 2.6325 0.4316 16 7 0.0786 3.2674 2.5184 17 6 -1.2208 3.7706 2.6731 18 6 -1.8495 3.7212 3.9093 19 7 -3.0722 4.1906 4.0689 20 6 -3.7497 4.7256 3.0684 21 8 -5.0026 5.2000 3.2830 22 6 -5.5229 5.0818 4.6086 23 6 -3.1847 4.8130 1.7915 24 6 -3.9477 5.4137 0.6694 25 7 -3.5272 5.5646 -0.5947 26 7 -4.4857 6.1230 -1.2529 27 7 -5.4740 6.3326 -0.4551 28 1 -6.3165 6.7452 -0.7017 29 7 -5.1686 5.9082 0.7228 30 6 -1.8939 4.3246 1.5892 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.8294 -0.0617 -2.9494 37 1 2.2718 2.1231 1.9978 38 1 0.7212 3.3531 3.2400 39 1 -1.3302 3.2921 4.7534 40 1 -5.5551 4.0303 4.8940 41 1 -4.8810 5.6267 5.3009 42 1 -6.5295 5.4988 4.6424 43 1 -1.4286 4.3762 0.6161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576689076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:54 Heat of formation + Delta-G solvation = 106.224627 kcal Electronic energy + Delta-G solvation = -30218.780850 eV Core-core repulsion = 25917.459629 eV Total energy + Delta-G solvation = -4301.321221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.40866 -40.96057 -39.61474 -37.89853 -35.53305 -34.67468 -34.22654 -33.77399 -32.49711 -31.50301 -30.89249 -29.34468 -27.40569 -26.72916 -25.08576 -24.66771 -23.37610 -22.81949 -22.09033 -20.66937 -19.59016 -19.28139 -18.57212 -18.18739 -17.44344 -17.13226 -16.94711 -16.09307 -15.90811 -15.30352 -15.14163 -14.82495 -14.38965 -14.30373 -13.86473 -13.72026 -13.61228 -13.24133 -12.91788 -12.65993 -12.30003 -12.28130 -11.94906 -11.60804 -11.49390 -11.36390 -11.25047 -11.16748 -11.05830 -10.98997 -10.83195 -10.43462 -10.33274 -10.17593 -9.99604 -9.63425 -9.43959 -9.09120 -9.03114 -8.50885 -8.04305 -7.71637 -6.12413 -4.22118 0.52378 1.17146 1.23951 2.22477 2.31256 2.88166 3.11504 3.25668 3.31596 3.32839 3.56485 3.61152 3.90530 4.11412 4.26675 4.32967 4.76017 4.91225 4.99744 5.11242 5.17855 5.19289 5.25397 5.37247 5.43881 5.55732 5.67703 6.00023 6.24183 6.37017 6.41991 6.49040 6.67075 6.76199 6.96327 7.08284 7.13581 7.32495 7.37084 7.44033 7.63634 7.64203 7.85523 7.95475 8.18402 8.18685 8.70891 8.81655 9.20242 9.45718 10.92829 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.002635 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.083215 B =10625.037408 C =11702.783498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.690 5.690 17 C 0.097 3.903 18 C 0.125 3.875 19 N -0.520 5.520 20 C 0.328 3.672 21 O -0.287 6.287 22 C 0.039 3.961 23 C -0.073 4.073 24 C 0.229 3.771 25 N -0.257 5.257 26 N -0.054 5.054 27 N -0.235 5.235 28 H 0.473 0.527 29 N -0.273 5.273 30 C -0.002 4.002 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.020 0.980 34 H 0.099 0.901 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.386 0.614 38 H 0.406 0.594 39 H 0.166 0.834 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.744 10.222 12.836 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.391 3.609 15 O -0.450 6.450 16 N -0.339 5.339 17 C -0.002 4.002 18 C -0.034 4.034 19 N -0.243 5.243 20 C 0.146 3.854 21 O -0.192 6.192 22 C -0.057 4.057 23 C -0.080 4.080 24 C -0.051 4.051 25 N -0.130 5.130 26 N -0.049 5.049 27 N -0.081 5.081 28 H 0.327 0.673 29 N -0.125 5.125 30 C -0.032 4.032 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.219 0.781 38 H 0.241 0.759 39 H 0.183 0.817 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -17.032 10.294 11.718 23.094 hybrid contribution 1.509 -0.018 0.388 1.558 sum -15.523 10.277 12.106 22.207 Atomic orbital electron populations 1.21819 0.98257 0.97912 1.01310 1.21958 0.92676 0.99844 1.02235 1.18744 0.94001 0.88904 0.79867 0.93030 1.21170 0.90614 1.39288 1.06358 0.92131 1.24867 0.98561 0.94793 0.95363 1.69877 1.35238 1.37346 1.09323 0.86516 0.84862 0.78302 0.77446 1.20206 1.21145 1.20187 1.45830 1.13098 1.58299 1.19387 1.16146 0.83845 0.78732 0.82144 1.90923 1.51723 1.64571 1.37747 1.42694 1.11009 1.61507 1.18739 1.18197 0.87457 0.99844 0.94707 1.22340 0.89022 0.95795 0.96259 1.67371 1.09262 1.15721 1.31928 1.19572 0.85712 0.91651 0.88485 1.86411 1.25157 1.75488 1.32141 1.22860 0.98631 1.02363 0.81800 1.17006 0.94665 1.08360 0.87952 1.23143 0.89014 1.00303 0.92646 1.76223 1.19659 1.14226 1.02907 1.78937 0.92629 1.13123 1.20224 1.47814 1.16758 1.39829 1.03671 0.67343 1.75141 1.16183 1.16256 1.04898 1.21829 0.91133 0.88830 1.01362 0.94336 0.93055 0.96045 0.88262 0.95098 0.92445 0.78148 0.75881 0.81671 0.92354 0.92388 0.88827 0.80714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.92 2.24 -69.08 -0.15 6.77 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.72 -13.73 5.03 -59.81 -0.30 -14.03 16 14 C 0.69 12.74 6.99 -86.91 -0.61 12.13 16 15 O -0.57 -12.64 10.95 5.28 0.06 -12.59 16 16 N -0.69 -9.24 5.36 -14.12 -0.08 -9.32 16 17 C 0.10 1.31 6.32 -83.51 -0.53 0.79 16 18 C 0.13 1.41 11.10 -17.30 -0.19 1.22 16 19 N -0.52 -6.43 9.20 -12.92 -0.12 -6.55 16 20 C 0.33 4.44 7.50 -16.80 -0.13 4.31 16 21 O -0.29 -3.50 8.85 -18.75 -0.17 -3.67 16 22 C 0.04 0.33 10.38 101.05 1.05 1.38 16 23 C -0.07 -1.09 5.90 -104.63 -0.62 -1.70 16 24 C 0.23 3.47 7.92 -156.29 -1.24 2.23 16 25 N -0.26 -4.16 12.30 32.15 0.40 -3.76 16 26 N -0.05 -0.72 13.47 60.35 0.81 0.09 16 27 N -0.24 -2.34 7.90 60.35 0.48 -1.86 16 28 H 0.47 2.16 8.96 -340.36 -3.05 -0.89 16 29 N -0.27 -3.48 10.94 32.16 0.35 -3.13 16 30 C 0.00 -0.03 8.46 -38.80 -0.33 -0.36 16 31 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 32 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.39 6.24 8.56 -40.82 -0.35 5.89 16 38 H 0.41 3.87 8.84 -40.82 -0.36 3.51 16 39 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 41 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.18 3.20 6.21 -52.49 -0.33 2.87 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -33.42 365.28 -7.99 -41.41 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.56 Total: 7.74 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -2.97 Total: 8.61 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 2.17 Total: -62.21 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.11 Total: -16.26 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.42 -7.99 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576689076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.635 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds