Wall clock time and date at job start Wed Apr 1 2020 04:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47157 * 2 1 4 4 H 1.09002 * 109.47059 * 305.00132 * 3 2 1 5 5 C 1.50695 * 109.47101 * 184.99399 * 3 2 1 6 6 H 1.08001 * 120.00532 * 240.00044 * 5 3 2 7 7 C 1.37881 * 119.99593 * 60.00634 * 5 3 2 8 8 N 1.31507 * 120.00321 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99677 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47191 * 60.00196 * 9 7 5 11 11 H 1.48508 * 109.46894 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47130 * 299.99489 * 9 7 5 13 13 N 1.46505 * 109.47119 * 64.99893 * 3 2 1 14 14 C 1.34783 * 119.99802 * 275.00309 * 13 3 2 15 15 O 1.21592 * 119.99685 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99973 * 180.02562 * 14 13 3 17 17 C 1.40200 * 119.99837 * 184.67186 * 16 14 13 18 18 C 1.38776 * 120.36191 * 145.00696 * 17 16 14 19 19 N 1.31943 * 120.99375 * 180.02562 * 18 17 16 20 20 C 1.32135 * 121.84105 * 359.97438 * 19 18 17 21 21 O 1.35681 * 119.68618 * 180.27482 * 20 19 18 22 22 C 1.42901 * 117.00253 * 359.72546 * 21 20 19 23 23 C 1.39908 * 120.61688 * 359.97438 * 20 19 18 24 24 C 1.48394 * 120.51666 * 179.97438 * 23 20 19 25 25 N 1.34069 * 126.67402 * 179.68715 * 24 23 20 26 26 N 1.28988 * 107.26621 * 179.83768 * 25 24 23 27 27 N 1.28730 * 108.94901 * 0.43365 * 26 25 24 28 28 H 0.97001 * 125.34249 * 179.73692 * 27 26 25 29 29 N 1.28874 * 109.32467 * 359.72603 * 27 26 25 30 30 C 1.39099 * 120.36373 * 325.01963 * 17 16 14 31 31 H 1.08998 * 109.47325 * 300.00064 * 1 2 3 32 32 H 1.09004 * 109.46461 * 60.00185 * 1 2 3 33 33 H 1.09002 * 109.47104 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47325 * 239.99935 * 2 1 3 35 35 H 1.09004 * 109.46874 * 120.00159 * 2 1 3 36 36 H 0.96996 * 120.00471 * 180.02562 * 8 7 5 37 37 H 0.96992 * 120.00004 * 94.99439 * 13 3 2 38 38 H 0.96999 * 119.99543 * 4.66532 * 16 14 13 39 39 H 1.07993 * 119.50501 * 0.02562 * 18 17 16 40 40 H 1.09000 * 109.47765 * 300.00103 * 22 21 20 41 41 H 1.09004 * 109.47164 * 60.00277 * 22 21 20 42 42 H 1.09000 * 109.47132 * 179.97438 * 22 21 20 43 43 H 1.07990 * 120.84124 * 359.96684 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8888 0.6525 7 6 4.1433 0.8784 -1.2279 8 7 3.4064 0.3367 -2.1728 9 14 6.0050 0.8812 -1.3815 10 1 6.5975 0.1472 -0.2347 11 1 6.3980 0.2167 -2.6502 12 1 6.4995 2.2814 -1.3819 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3412 2.6325 0.4316 16 7 0.0786 3.2674 2.5184 17 6 -1.2208 3.7706 2.6731 18 6 -1.8495 3.7212 3.9093 19 7 -3.0722 4.1906 4.0689 20 6 -3.7497 4.7256 3.0684 21 8 -5.0026 5.2000 3.2830 22 6 -5.5229 5.0818 4.6086 23 6 -3.1847 4.8130 1.7915 24 6 -3.9477 5.4137 0.6694 25 7 -3.5272 5.5646 -0.5947 26 7 -4.4857 6.1230 -1.2529 27 7 -5.4740 6.3326 -0.4551 28 1 -6.3165 6.7452 -0.7017 29 7 -5.1686 5.9082 0.7228 30 6 -1.8939 4.3246 1.5892 31 1 -0.3634 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 3.8294 -0.0617 -2.9494 37 1 2.2718 2.1231 1.9978 38 1 0.7212 3.3531 3.2400 39 1 -1.3302 3.2921 4.7534 40 1 -5.5551 4.0303 4.8940 41 1 -4.8810 5.6267 5.3009 42 1 -6.5295 5.4988 4.6424 43 1 -1.4286 4.3762 0.6161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576689076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:54 Heat of formation + Delta-G solvation = 78.438854 kcal Electronic energy + Delta-G solvation = -30219.985731 eV Core-core repulsion = 25917.459629 eV Total energy + Delta-G solvation = -4302.526103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.44505 -42.05738 -40.93567 -38.96022 -37.15672 -35.80935 -35.52711 -34.83062 -34.30060 -32.89789 -32.34743 -30.50641 -28.79953 -27.99669 -26.12611 -25.70375 -25.07325 -24.09792 -23.25727 -22.12117 -21.31722 -20.34967 -19.81507 -19.31887 -18.70171 -18.16265 -18.13090 -17.58447 -16.97951 -16.92649 -16.44907 -16.20711 -15.87009 -15.32457 -15.18563 -14.91324 -14.78311 -14.54113 -14.43548 -14.00175 -13.83978 -13.47757 -13.32022 -13.13057 -12.85661 -12.66394 -12.62659 -12.54727 -12.35032 -12.20431 -12.15930 -12.12821 -12.03631 -11.57134 -11.45930 -11.22824 -11.00201 -10.79629 -10.48571 -10.24095 -9.64072 -8.88906 -8.11311 -6.28155 -0.49811 0.11653 0.16430 1.21432 1.42438 1.48443 1.50128 1.57415 1.73902 2.09788 2.25238 2.45773 2.58177 2.73340 3.06831 3.18497 3.31455 3.54046 3.81252 3.96576 4.11759 4.28482 4.53712 4.54555 4.54893 4.55606 4.60774 4.62545 4.80273 4.85899 4.99447 5.07115 5.14147 5.30271 5.49581 5.58844 5.62662 5.64400 5.66279 5.81173 5.91945 6.19123 6.22459 6.31016 6.63932 6.80483 7.13336 7.32059 7.40300 7.78187 8.93796 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.002635 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.083215 B =10625.037408 C =11702.783498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.711 5.711 14 C 0.691 3.309 15 O -0.612 6.612 16 N -0.665 5.665 17 C 0.082 3.918 18 C 0.154 3.846 19 N -0.516 5.516 20 C 0.333 3.667 21 O -0.296 6.296 22 C 0.033 3.967 23 C -0.092 4.092 24 C 0.215 3.785 25 N -0.300 5.300 26 N -0.061 5.061 27 N -0.201 5.201 28 H 0.494 0.506 29 N -0.268 5.268 30 C -0.018 4.018 31 H 0.044 0.956 32 H 0.022 0.978 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.404 0.596 38 H 0.428 0.572 39 H 0.212 0.788 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.017 10.565 16.066 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.364 5.364 14 C 0.391 3.609 15 O -0.492 6.492 16 N -0.317 5.317 17 C -0.016 4.016 18 C -0.006 4.006 19 N -0.239 5.239 20 C 0.151 3.849 21 O -0.201 6.201 22 C -0.061 4.061 23 C -0.099 4.099 24 C -0.065 4.065 25 N -0.172 5.172 26 N -0.056 5.056 27 N -0.052 5.052 28 H 0.354 0.646 29 N -0.121 5.121 30 C -0.048 4.048 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.239 0.761 38 H 0.267 0.733 39 H 0.228 0.772 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.333 10.687 15.018 25.302 hybrid contribution 1.390 -0.025 -0.558 1.498 sum -15.943 10.662 14.460 24.020 Atomic orbital electron populations 1.21640 0.97183 0.98719 1.00187 1.21795 0.93491 0.99358 1.01286 1.18244 0.93342 0.88756 0.80315 0.98304 1.21550 0.91383 1.38794 1.06661 0.90739 1.25741 1.03085 0.94517 0.95106 1.70044 1.37071 1.38374 1.09879 0.85458 0.79384 0.78363 0.77467 1.18798 1.21556 1.19758 1.45375 1.14004 1.58526 1.18483 1.16219 0.83066 0.78641 0.82937 1.90924 1.52771 1.65811 1.39685 1.42227 1.11641 1.60183 1.17664 1.18296 0.87424 1.00697 0.95217 1.22952 0.88277 0.93240 0.96147 1.67545 1.09507 1.15711 1.31150 1.19617 0.86214 0.91002 0.88060 1.86401 1.24399 1.75025 1.34310 1.23151 0.99942 1.02878 0.80178 1.17067 0.94649 1.09363 0.88830 1.23306 0.89726 1.00957 0.92550 1.76211 1.21172 1.15953 1.03913 1.78852 0.92999 1.13379 1.20373 1.47864 1.16921 1.37797 1.02610 0.64637 1.75090 1.15269 1.16107 1.05587 1.21585 0.91995 0.90412 1.00779 0.93722 0.95868 0.94090 0.91168 0.93840 0.92699 0.76076 0.73253 0.77193 0.92177 0.91751 0.86195 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.81 5.45 30.60 0.17 -5.64 16 3 C 0.30 14.75 2.24 44.24 0.10 14.85 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -27.92 8.73 25.60 0.22 -27.69 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -52.05 11.29 21.45 0.24 -51.81 16 9 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 N -0.71 -27.21 5.03 -461.39 -2.32 -29.53 16 14 C 0.69 25.64 6.99 179.05 1.25 26.89 16 15 O -0.61 -28.32 10.95 -4.01 -0.04 -28.36 16 16 N -0.67 -16.92 5.36 -316.86 -1.70 -18.61 16 17 C 0.08 2.12 6.32 38.14 0.24 2.37 16 18 C 0.15 2.97 11.10 84.80 0.94 3.91 16 19 N -0.52 -11.38 9.20 -307.72 -2.83 -14.21 16 20 C 0.33 8.57 7.50 85.05 0.64 9.21 16 21 O -0.30 -6.72 8.85 -89.99 -0.80 -7.51 16 22 C 0.03 0.47 10.38 113.37 1.18 1.65 16 23 C -0.09 -2.79 5.90 -19.87 -0.12 -2.90 16 24 C 0.21 6.67 7.92 137.35 1.09 7.75 16 25 N -0.30 -10.21 12.30 -52.21 -0.64 -10.85 16 26 N -0.06 -1.67 13.47 37.02 0.50 -1.17 16 27 N -0.20 -3.87 7.90 37.02 0.29 -3.58 16 28 H 0.49 3.81 8.96 -347.53 -3.12 0.69 16 29 N -0.27 -6.69 10.94 -52.16 -0.57 -7.26 16 30 C -0.02 -0.57 8.46 22.78 0.19 -0.38 16 31 H 0.04 1.94 5.64 -2.39 -0.01 1.92 16 32 H 0.02 1.14 7.84 -2.38 -0.02 1.12 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 3.84 5.95 -2.39 -0.01 3.83 16 35 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.40 12.43 8.56 -92.71 -0.79 11.64 16 38 H 0.43 6.95 8.84 -92.71 -0.82 6.13 16 39 H 0.21 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.06 0.85 8.11 -2.39 -0.02 0.83 16 41 H 0.06 0.85 8.10 -2.38 -0.02 0.83 16 42 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.14 5.57 6.21 -2.92 -0.02 5.55 16 Total: -1.00 -76.65 365.28 -2.48 -79.13 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -3.60 Total: 23.84 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 6.96 Total: 26.47 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -7.03 Total: -137.03 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.84 Total: -35.88 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -76.65 -2.48 -79.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576689076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.572 kcal (2) G-P(sol) polarization free energy of solvation -76.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds