Wall clock time and date at job start Wed Apr 1 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.70629 * 2 1 4 4 C 1.53197 * 109.58524 * 120.35556 * 2 1 3 5 5 C 1.53038 * 109.31427 * 65.15142 * 4 2 1 6 6 C 1.53042 * 109.53568 * 61.36625 * 5 4 2 7 7 H 1.09000 * 109.49947 * 58.58639 * 6 5 4 8 8 C 1.50707 * 109.49601 * 178.65289 * 6 5 4 9 9 O 1.20822 * 119.99678 * 359.93070 * 8 6 5 10 10 O 1.34228 * 119.99796 * 179.97438 * 8 6 5 11 11 C 1.53189 * 109.33957 * 298.61887 * 6 5 4 12 12 N 1.46926 * 109.58981 * 239.63964 * 2 1 3 13 13 C 1.34781 * 120.62808 * 113.84325 * 12 2 1 14 14 O 1.21285 * 119.99897 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00154 * 180.02562 * 13 12 2 16 16 C 1.50699 * 109.47312 * 179.97438 * 15 13 12 17 17 C 1.38323 * 119.96490 * 269.72614 * 16 15 13 18 18 C 1.38281 * 120.13653 * 179.76845 * 17 16 15 19 19 C 1.38121 * 120.06692 * 0.50307 * 18 17 16 20 20 C 1.38855 * 119.93198 * 359.75347 * 19 18 17 21 21 O 1.35753 * 120.06929 * 179.97438 * 20 19 18 22 22 C 1.34831 * 116.99832 * 354.48310 * 21 20 19 23 23 H 1.07997 * 120.00071 * 5.05900 * 22 21 20 24 24 C 1.38655 * 119.99524 * 185.06235 * 22 21 20 25 25 N 1.31553 * 120.00439 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99768 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47268 * 89.99435 * 26 24 22 28 28 H 1.48499 * 109.47258 * 209.99929 * 26 24 22 29 29 H 1.48509 * 109.46906 * 329.99669 * 26 24 22 30 30 C 1.38076 * 119.96300 * 89.99941 * 16 15 13 31 31 H 1.08996 * 109.47437 * 299.64936 * 1 2 3 32 32 H 1.08999 * 109.46821 * 59.64515 * 1 2 3 33 33 H 1.09005 * 109.47104 * 179.64573 * 1 2 3 34 34 H 1.09000 * 109.49717 * 305.19855 * 4 2 1 35 35 H 1.09004 * 109.49749 * 185.10423 * 4 2 1 36 36 H 1.09002 * 109.46056 * 301.34701 * 5 4 2 37 37 H 1.09003 * 109.46102 * 181.38349 * 5 4 2 38 38 H 0.96702 * 116.99718 * 179.97438 * 10 8 6 39 39 H 1.08998 * 109.59041 * 174.44266 * 11 6 5 40 40 H 1.09004 * 109.58860 * 294.86455 * 11 6 5 41 41 H 1.09004 * 109.47102 * 300.00176 * 15 13 12 42 42 H 1.09002 * 109.47182 * 59.99997 * 15 13 12 43 43 H 1.08002 * 119.93286 * 359.97438 * 17 16 15 44 44 H 1.07998 * 119.96558 * 180.25381 * 18 17 16 45 45 H 1.08007 * 120.03341 * 179.72270 * 19 18 17 46 46 H 0.97004 * 120.00072 * 180.02562 * 25 24 22 47 47 H 1.08005 * 120.03549 * 359.95808 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 1.6414 -2.2041 1.1702 6 6 2.2800 -2.8464 -0.0634 7 1 3.3640 -2.7474 -0.0051 8 6 1.9104 -4.3064 -0.1185 9 8 1.2093 -4.7849 0.7412 10 8 2.3610 -5.0753 -1.1223 11 6 1.7693 -2.1417 -1.3241 12 7 2.0226 -0.6996 -1.1944 13 6 2.6945 -0.0318 -2.1531 14 8 2.8972 1.1581 -2.0348 15 6 3.1930 -0.7634 -3.3727 16 6 3.9051 0.2040 -4.2827 17 6 3.1998 0.8754 -5.2650 18 6 3.8488 1.7674 -6.0988 19 6 5.2060 1.9827 -5.9598 20 6 5.9178 1.3062 -4.9781 21 8 7.2520 1.5153 -4.8392 22 6 7.8467 2.3037 -5.7572 23 1 7.2515 2.8021 -6.5080 24 6 9.2226 2.4745 -5.7372 25 7 9.9476 1.8679 -4.8223 26 14 10.0466 3.5674 -7.0085 27 1 10.1157 4.9590 -6.4949 28 1 11.4200 3.0690 -7.2741 29 1 9.2591 3.5429 -8.2673 30 6 5.2621 0.4148 -4.1386 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6075 -0.2784 2.1369 35 1 3.1297 -0.6504 1.2914 36 1 0.5564 -2.2815 1.0993 37 1 1.9843 -2.7202 2.0670 38 1 2.0977 -6.0057 -1.1148 39 1 2.2945 -2.5287 -2.1972 40 1 0.6988 -2.3163 -1.4320 41 1 3.8824 -1.5507 -3.0676 42 1 2.3485 -1.2050 -3.9019 43 1 2.1394 0.7052 -5.3788 44 1 3.2946 2.2933 -6.8622 45 1 5.7132 2.6762 -6.6143 46 1 10.9101 1.9877 -4.8081 47 1 5.8129 -0.1126 -3.3738 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589302914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:18 Heat of formation + Delta-G solvation = -133.366295 kcal Electronic energy + Delta-G solvation = -30400.214337 eV Core-core repulsion = 26127.458515 eV Total energy + Delta-G solvation = -4272.755822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.20674 -40.13083 -38.94882 -37.75002 -36.54674 -36.32911 -33.46726 -33.10452 -32.27769 -31.67971 -29.16595 -28.49089 -27.06495 -25.25896 -25.17605 -24.39464 -22.23216 -21.57212 -21.05903 -20.20569 -18.78634 -18.42125 -17.60511 -17.49472 -16.93562 -16.75198 -16.31755 -15.87563 -15.33426 -15.08600 -14.90238 -14.41578 -14.35793 -14.25178 -13.92185 -13.81398 -13.52478 -13.35144 -13.29151 -13.06214 -12.59833 -12.49322 -12.45643 -12.29040 -11.96739 -11.82974 -11.75206 -11.52937 -11.40821 -11.24058 -11.16252 -10.98195 -10.78938 -10.73505 -10.71790 -10.57327 -10.40903 -9.68677 -9.28790 -8.86006 -8.79033 -8.01422 -7.16587 -6.39585 -3.98491 1.73170 2.12278 2.43658 2.50995 2.70657 2.91565 3.16523 3.16685 3.21549 4.00843 4.07236 4.26074 4.33779 4.53610 4.59347 4.71811 4.85825 4.89968 4.97441 5.01211 5.10310 5.14854 5.15824 5.20573 5.27701 5.31305 5.48396 5.51264 5.56365 5.62445 5.68807 5.72864 5.78860 5.84379 5.97906 6.02937 6.10098 6.22308 6.36311 6.39332 6.70705 6.96723 7.12304 7.24485 7.31413 7.42121 7.46027 7.49288 7.87939 8.05634 8.22731 9.06328 9.77549 10.78753 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.002300 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.351317 B =12171.452237 C =12616.239761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 H 0.105 0.895 4 C -0.129 4.129 5 C -0.105 4.105 6 C -0.098 4.098 7 H 0.118 0.882 8 C 0.487 3.513 9 O -0.512 6.512 10 O -0.512 6.512 11 C 0.119 3.881 12 N -0.616 5.616 13 C 0.520 3.480 14 O -0.512 6.512 15 C -0.094 4.094 16 C -0.033 4.033 17 C -0.196 4.196 18 C -0.075 4.075 19 C -0.231 4.231 20 C 0.155 3.845 21 O -0.180 6.180 22 C -0.390 4.390 23 H 0.091 0.909 24 C 0.038 3.962 25 N -0.865 5.865 26 Si 0.940 3.060 27 H -0.274 1.274 28 H -0.278 1.278 29 H -0.268 1.268 30 C -0.174 4.174 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.412 0.588 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.269 0.731 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 -11.532 8.835 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.123 0.877 4 C -0.167 4.167 5 C -0.142 4.142 6 C -0.118 4.118 7 H 0.136 0.864 8 C 0.329 3.671 9 O -0.400 6.400 10 O -0.324 6.324 11 C -0.005 4.005 12 N -0.351 5.351 13 C 0.309 3.691 14 O -0.386 6.386 15 C -0.134 4.134 16 C -0.034 4.034 17 C -0.215 4.215 18 C -0.093 4.093 19 C -0.250 4.250 20 C 0.102 3.898 21 O -0.084 6.084 22 C -0.467 4.467 23 H 0.109 0.891 24 C -0.165 4.165 25 N -0.500 5.500 26 Si 0.765 3.235 27 H -0.199 1.199 28 H -0.203 1.203 29 H -0.192 1.192 30 C -0.193 4.193 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.271 0.729 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.079 0.921 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.287 -10.661 9.340 23.137 hybrid contribution 0.224 -0.207 -0.590 0.664 sum -18.063 -10.868 8.750 22.825 Atomic orbital electron populations 1.22147 0.95015 1.02208 1.02610 1.21196 0.94040 0.98038 0.83762 0.87707 1.21955 1.02168 0.94567 0.97987 1.21480 1.01492 0.95343 0.95924 1.21500 1.04391 0.86890 0.99034 0.86432 1.23304 0.76128 0.89593 0.78119 1.90732 1.35481 1.75032 1.38757 1.84560 1.71504 1.27248 1.49116 1.21578 1.01513 0.80704 0.96694 1.48220 1.57411 1.08048 1.21468 1.20794 0.76875 0.87752 0.83708 1.90759 1.55014 1.15058 1.77735 1.20652 1.01149 0.98222 0.93381 1.18653 0.92594 0.96909 0.95243 1.20340 0.98318 1.02813 1.00049 1.20674 0.93976 0.96781 0.97856 1.21176 0.94669 1.05890 1.03264 1.19271 0.85413 0.92336 0.92812 1.83977 1.15291 1.61131 1.47973 1.21313 0.90588 1.25036 1.09720 0.89141 1.25266 0.95264 0.97936 0.98064 1.70040 1.06495 1.40782 1.32690 0.85729 0.78685 0.79372 0.79732 1.19927 1.20303 1.19231 1.19935 0.93484 1.02996 1.02913 0.91379 0.92127 0.92276 0.89901 0.90884 0.90420 0.90551 0.72893 0.87944 0.90738 0.88146 0.88372 0.87986 0.87506 0.85638 0.92124 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.02 37.16 0.34 -0.90 16 2 C 0.13 1.25 3.21 -67.60 -0.22 1.03 16 3 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 4 C -0.13 -0.96 5.55 -26.61 -0.15 -1.11 16 5 C -0.10 -0.74 4.25 -26.69 -0.11 -0.85 16 6 C -0.10 -0.70 2.78 -91.65 -0.25 -0.95 16 7 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 8 C 0.49 3.74 7.63 36.01 0.27 4.01 16 9 O -0.51 -5.37 16.74 -18.75 -0.31 -5.68 16 10 O -0.51 -2.94 13.35 -39.25 -0.52 -3.46 16 11 C 0.12 0.88 5.14 -3.68 -0.02 0.86 16 12 N -0.62 -6.31 2.68 -165.17 -0.44 -6.75 16 13 C 0.52 7.35 7.69 -10.98 -0.08 7.27 16 14 O -0.51 -9.72 15.45 5.55 0.09 -9.64 16 15 C -0.09 -1.23 4.18 -29.04 -0.12 -1.35 16 16 C -0.03 -0.61 4.37 -104.65 -0.46 -1.06 16 17 C -0.20 -3.53 9.70 -39.53 -0.38 -3.92 16 18 C -0.07 -1.44 10.04 -39.61 -0.40 -1.83 16 19 C -0.23 -5.22 9.17 -39.40 -0.36 -5.58 16 20 C 0.15 3.88 6.65 -39.11 -0.26 3.62 16 21 O -0.18 -5.27 9.76 0.04 0.00 -5.27 16 22 C -0.39 -11.14 9.49 30.89 0.29 -10.85 16 23 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 24 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 25 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 26 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 29 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 30 C -0.17 -3.80 9.65 -39.40 -0.38 -4.18 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.40 5.72 -51.93 -0.30 0.11 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.55 6.49 -51.93 -0.34 0.22 16 37 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.41 0.75 9.10 45.56 0.41 1.17 16 39 H 0.10 0.67 5.94 -51.93 -0.31 0.36 16 40 H 0.07 0.48 7.48 -51.93 -0.39 0.09 16 41 H 0.10 1.12 7.63 -51.93 -0.40 0.72 16 42 H 0.10 0.99 7.89 -51.93 -0.41 0.58 16 43 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -36.69 385.89 -7.63 -44.32 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.59 Total: 4.64 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.39 Total: -14.83 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.32 Total: -31.73 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.75 Total: -24.05 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.69 -7.63 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589302914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.051 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds