Wall clock time and date at job start Wed Apr 1 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.70060 * 2 1 4 4 C 1.53615 * 109.66589 * 120.59163 * 2 1 3 5 5 C 1.53044 * 109.24423 * 174.54738 * 4 2 1 6 6 C 1.53041 * 109.53757 * 298.51545 * 5 4 2 7 7 H 1.08993 * 109.52077 * 301.39087 * 6 5 4 8 8 C 1.50700 * 109.49316 * 181.31305 * 6 5 4 9 9 O 1.20826 * 120.00629 * 0.16035 * 8 6 5 10 10 O 1.34229 * 119.99808 * 180.16307 * 8 6 5 11 11 C 1.53184 * 109.31238 * 61.36240 * 6 5 4 12 12 N 1.46922 * 109.58566 * 239.64655 * 2 1 3 13 13 C 1.34774 * 120.63263 * 6.62511 * 12 2 1 14 14 O 1.21285 * 119.99933 * 5.52177 * 13 12 2 15 15 C 1.50706 * 120.00291 * 185.51829 * 13 12 2 16 16 C 1.50696 * 109.47046 * 179.97438 * 15 13 12 17 17 C 1.38322 * 119.96552 * 269.97891 * 16 15 13 18 18 C 1.38282 * 120.13693 * 180.02562 * 17 16 15 19 19 C 1.38119 * 120.07140 * 359.73996 * 18 17 16 20 20 C 1.38863 * 119.92950 * 0.53473 * 19 18 17 21 21 O 1.35744 * 120.07166 * 179.74819 * 20 19 18 22 22 C 1.34826 * 117.00083 * 4.99415 * 21 20 19 23 23 H 1.08004 * 120.00057 * 354.96280 * 22 21 20 24 24 C 1.38659 * 120.00315 * 174.96047 * 22 21 20 25 25 N 1.31555 * 119.99828 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00113 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47128 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.47097 * 300.00045 * 26 24 22 29 29 H 1.48500 * 109.47094 * 59.99874 * 26 24 22 30 30 C 1.38082 * 119.96671 * 90.00456 * 16 15 13 31 31 H 1.09000 * 109.46866 * 174.54861 * 1 2 3 32 32 H 1.08993 * 109.46950 * 294.54606 * 1 2 3 33 33 H 1.08992 * 109.47041 * 54.54966 * 1 2 3 34 34 H 1.09002 * 109.63541 * 54.56141 * 4 2 1 35 35 H 1.08998 * 109.43649 * 294.41911 * 4 2 1 36 36 H 1.08999 * 109.46196 * 178.48947 * 5 4 2 37 37 H 1.09005 * 109.45387 * 58.53178 * 5 4 2 38 38 H 0.96704 * 117.00340 * 180.02562 * 10 8 6 39 39 H 1.09004 * 109.58485 * 185.57442 * 11 6 5 40 40 H 1.09000 * 109.70974 * 65.21953 * 11 6 5 41 41 H 1.09001 * 109.46681 * 60.00232 * 15 13 12 42 42 H 1.08999 * 109.47028 * 300.00400 * 15 13 12 43 43 H 1.07998 * 119.92941 * 359.97434 * 17 16 15 44 44 H 1.08002 * 119.96248 * 179.97438 * 18 17 16 45 45 H 1.07994 * 120.03841 * 180.25555 * 19 18 17 46 46 H 0.96999 * 119.99879 * 179.97438 * 25 24 22 47 47 H 1.08004 * 120.03396 * 359.97188 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 6 3.5713 -0.8498 1.1675 6 6 3.9616 -1.6627 -0.0690 7 1 3.5067 -2.6516 -0.0132 8 6 5.4611 -1.8013 -0.1269 9 8 6.1476 -1.3038 0.7339 10 8 6.0341 -2.4774 -1.1350 11 6 3.4657 -0.9419 -1.3264 12 7 2.0226 -0.6995 -1.1945 13 6 1.1675 -1.1061 -2.1536 14 8 -0.0063 -0.8088 -2.0853 15 6 1.6699 -1.9302 -3.3111 16 6 0.5228 -2.2518 -4.2340 17 6 -0.2201 -3.4019 -4.0379 18 6 -1.2731 -3.7008 -4.8830 19 6 -1.5895 -2.8483 -5.9227 20 6 -0.8420 -1.6958 -6.1256 21 8 -1.1472 -0.8586 -7.1496 22 6 -2.2499 -1.1484 -7.8693 23 1 -2.7994 -2.0572 -7.6731 24 6 -2.6785 -0.2796 -8.8613 25 7 -2.0096 0.8278 -9.0999 26 14 -4.2066 -0.6808 -9.8579 27 1 -4.4497 0.3991 -10.8478 28 1 -4.0091 -1.9690 -10.5699 29 1 -5.3755 -0.7919 -8.9487 30 6 0.2149 -1.3982 -5.2748 31 1 -0.3633 -1.0230 -0.0976 32 1 -0.3633 0.4269 0.9347 33 1 -0.3633 0.5960 -0.8371 34 1 1.6098 -1.7337 1.2889 35 1 1.7690 -0.1771 2.1386 36 1 3.9444 -1.3479 2.0624 37 1 4.0066 0.1473 1.0989 38 1 6.9991 -2.5399 -1.1293 39 1 3.6533 -1.5636 -2.2019 40 1 3.9875 0.0089 -1.4349 41 1 2.1045 -2.8567 -2.9357 42 1 2.4282 -1.3675 -3.8556 43 1 0.0232 -4.0684 -3.2237 44 1 -1.8510 -4.5998 -4.7276 45 1 -2.4145 -3.0801 -6.5798 46 1 -2.3092 1.4353 -9.7942 47 1 0.7953 -0.5003 -5.4273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589302920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:21 Heat of formation + Delta-G solvation = -119.462910 kcal Electronic energy + Delta-G solvation = -30467.171457 eV Core-core repulsion = 26195.018531 eV Total energy + Delta-G solvation = -4272.152926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.21876 -40.26011 -38.93506 -37.57195 -36.57151 -36.34292 -33.65470 -33.17427 -32.26809 -31.62955 -29.17749 -28.38454 -26.96276 -25.35655 -25.13953 -23.74092 -22.43101 -21.56880 -20.91275 -20.50287 -19.14910 -18.46803 -17.60125 -17.34051 -16.96750 -16.72628 -16.38230 -15.72514 -15.51935 -15.01242 -14.67091 -14.50482 -14.38517 -14.20087 -13.95433 -13.71125 -13.65944 -13.40403 -13.11318 -12.89376 -12.59750 -12.44041 -12.33611 -12.31212 -11.97199 -11.82311 -11.56793 -11.44424 -11.31253 -11.26779 -11.19394 -11.16234 -10.94334 -10.78002 -10.71844 -10.57370 -10.41686 -9.29449 -9.03131 -8.78774 -8.76539 -8.00968 -7.16508 -6.39298 -3.98287 1.70439 2.12551 2.43627 2.48775 2.70970 2.91774 3.16297 3.18240 3.20390 4.01059 4.04179 4.24717 4.33696 4.48544 4.60189 4.74940 4.85708 4.89323 4.95723 5.01159 5.09642 5.19746 5.21784 5.27981 5.33371 5.43555 5.50670 5.51487 5.58625 5.70421 5.70987 5.79174 5.82143 5.97519 6.05141 6.12995 6.21508 6.27504 6.38927 6.61499 6.70685 6.96654 7.12008 7.27673 7.31475 7.41976 7.43161 7.49350 7.87855 8.05764 8.27285 9.06473 9.77547 10.79001 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002248 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.963259 B =12453.020597 C =12833.490418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.142 3.858 3 H 0.072 0.928 4 C -0.130 4.130 5 C -0.104 4.104 6 C -0.097 4.097 7 H 0.116 0.884 8 C 0.487 3.513 9 O -0.512 6.512 10 O -0.513 6.513 11 C 0.119 3.881 12 N -0.618 5.618 13 C 0.519 3.481 14 O -0.503 6.503 15 C -0.097 4.097 16 C -0.032 4.032 17 C -0.196 4.196 18 C -0.075 4.075 19 C -0.231 4.231 20 C 0.155 3.845 21 O -0.180 6.180 22 C -0.391 4.391 23 H 0.091 0.909 24 C 0.039 3.961 25 N -0.865 5.865 26 Si 0.940 3.060 27 H -0.278 1.278 28 H -0.270 1.270 29 H -0.270 1.270 30 C -0.174 4.174 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.412 0.588 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.126 0.874 46 H 0.270 0.730 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.691 -5.912 19.134 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.039 3.961 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.142 4.142 6 C -0.117 4.117 7 H 0.134 0.866 8 C 0.328 3.672 9 O -0.399 6.399 10 O -0.325 6.325 11 C -0.005 4.005 12 N -0.355 5.355 13 C 0.307 3.693 14 O -0.376 6.376 15 C -0.136 4.136 16 C -0.033 4.033 17 C -0.215 4.215 18 C -0.093 4.093 19 C -0.250 4.250 20 C 0.101 3.899 21 O -0.083 6.083 22 C -0.467 4.467 23 H 0.108 0.892 24 C -0.165 4.165 25 N -0.500 5.500 26 Si 0.765 3.235 27 H -0.203 1.203 28 H -0.195 1.195 29 H -0.195 1.195 30 C -0.193 4.193 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.271 0.729 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 12.863 -5.162 19.130 23.624 hybrid contribution 0.064 -0.356 -0.404 0.543 sum 12.928 -5.518 18.726 23.415 Atomic orbital electron populations 1.22211 0.92104 1.04075 1.01296 1.21406 0.96241 0.95020 0.83443 0.91028 1.22122 0.94496 1.01962 0.98267 1.21459 0.96196 1.00679 0.95871 1.21490 0.87559 1.03524 0.99094 0.86593 1.23303 0.91757 0.73987 0.78153 1.90738 1.65052 1.45265 1.38882 1.84551 1.29464 1.69616 1.48859 1.21587 0.81524 1.00745 0.96618 1.48180 1.06267 1.59653 1.21365 1.20743 0.86075 0.79670 0.82765 1.90812 1.16842 1.54493 1.75451 1.20697 0.98296 1.00348 0.94299 1.18648 0.95531 0.94768 0.94342 1.20325 0.99980 0.99037 1.02170 1.20670 0.96175 0.97951 0.94493 1.21170 1.04343 0.97196 1.02324 1.19269 0.92942 0.89728 0.87921 1.83972 1.42241 1.45760 1.36371 1.21263 1.02880 1.07622 1.14936 0.89195 1.25267 0.99041 0.94922 0.97286 1.70030 1.38678 1.10242 1.31070 0.85798 0.80319 0.78286 0.79119 1.20327 1.19550 1.19528 1.19931 1.00819 1.01188 0.97366 0.91514 0.93873 0.89860 0.91023 0.89988 0.90538 0.90624 0.72852 0.87905 0.90633 0.88415 0.88375 0.88031 0.87548 0.85671 0.92064 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.62 37.16 0.28 -1.37 16 2 C 0.14 1.35 3.51 -67.38 -0.24 1.11 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -0.92 5.40 -26.39 -0.14 -1.07 16 5 C -0.10 -0.70 4.46 -26.69 -0.12 -0.82 16 6 C -0.10 -0.64 2.78 -91.66 -0.25 -0.89 16 7 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 8 C 0.49 3.56 7.63 36.01 0.27 3.83 16 9 O -0.51 -5.27 16.74 -18.75 -0.31 -5.58 16 10 O -0.51 -2.72 13.35 -39.25 -0.52 -3.25 16 11 C 0.12 0.88 5.56 -3.71 -0.02 0.86 16 12 N -0.62 -6.32 2.97 -164.97 -0.49 -6.81 16 13 C 0.52 7.15 7.50 -10.98 -0.08 7.06 16 14 O -0.50 -8.99 11.60 5.55 0.06 -8.93 16 15 C -0.10 -1.24 4.18 -29.03 -0.12 -1.36 16 16 C -0.03 -0.58 4.37 -104.65 -0.46 -1.03 16 17 C -0.20 -3.48 9.70 -39.53 -0.38 -3.86 16 18 C -0.07 -1.42 10.04 -39.61 -0.40 -1.82 16 19 C -0.23 -5.20 9.17 -39.39 -0.36 -5.56 16 20 C 0.15 3.86 6.65 -39.11 -0.26 3.60 16 21 O -0.18 -5.25 9.76 0.08 0.00 -5.25 16 22 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 23 H 0.09 2.38 5.20 -52.48 -0.27 2.10 16 24 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 25 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 26 Si 0.94 20.91 29.55 -169.99 -5.02 15.88 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 29 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 30 C -0.17 -3.77 9.65 -39.39 -0.38 -4.15 16 31 H 0.07 0.90 6.95 -51.93 -0.36 0.54 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 1.23 6.54 -51.93 -0.34 0.89 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.41 0.62 9.10 45.56 0.41 1.04 16 39 H 0.10 0.66 5.93 -51.93 -0.31 0.36 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.97 7.87 -51.93 -0.41 0.56 16 42 H 0.10 1.09 7.65 -51.93 -0.40 0.69 16 43 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 45 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 46 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.11 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -36.02 384.55 -7.94 -43.96 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.75 Total: 4.57 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.46 Total: -15.34 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.27 Total: -31.86 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.77 Total: -23.01 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.02 -7.94 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589302920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.499 kcal (2) G-P(sol) polarization free energy of solvation -36.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds