Wall clock time and date at job start Wed Apr 1 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.70060 * 2 1 4 4 C 1.53615 * 109.66589 * 120.59163 * 2 1 3 5 5 C 1.53044 * 109.24423 * 174.54738 * 4 2 1 6 6 C 1.53041 * 109.53757 * 298.51545 * 5 4 2 7 7 H 1.08993 * 109.52077 * 301.39087 * 6 5 4 8 8 C 1.50700 * 109.49316 * 181.31305 * 6 5 4 9 9 O 1.20826 * 120.00629 * 0.16035 * 8 6 5 10 10 O 1.34229 * 119.99808 * 180.16307 * 8 6 5 11 11 C 1.53184 * 109.31238 * 61.36240 * 6 5 4 12 12 N 1.46922 * 109.58566 * 239.64655 * 2 1 3 13 13 C 1.34774 * 120.63263 * 6.62511 * 12 2 1 14 14 O 1.21285 * 119.99933 * 5.52177 * 13 12 2 15 15 C 1.50706 * 120.00291 * 185.51829 * 13 12 2 16 16 C 1.50696 * 109.47046 * 179.97438 * 15 13 12 17 17 C 1.38322 * 119.96552 * 269.97891 * 16 15 13 18 18 C 1.38282 * 120.13693 * 180.02562 * 17 16 15 19 19 C 1.38119 * 120.07140 * 359.73996 * 18 17 16 20 20 C 1.38863 * 119.92950 * 0.53473 * 19 18 17 21 21 O 1.35744 * 120.07166 * 179.74819 * 20 19 18 22 22 C 1.34826 * 117.00083 * 4.99415 * 21 20 19 23 23 H 1.08004 * 120.00057 * 354.96280 * 22 21 20 24 24 C 1.38659 * 120.00315 * 174.96047 * 22 21 20 25 25 N 1.31555 * 119.99828 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00113 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47128 * 180.02562 * 26 24 22 28 28 H 1.48502 * 109.47097 * 300.00045 * 26 24 22 29 29 H 1.48500 * 109.47094 * 59.99874 * 26 24 22 30 30 C 1.38082 * 119.96671 * 90.00456 * 16 15 13 31 31 H 1.09000 * 109.46866 * 174.54861 * 1 2 3 32 32 H 1.08993 * 109.46950 * 294.54606 * 1 2 3 33 33 H 1.08992 * 109.47041 * 54.54966 * 1 2 3 34 34 H 1.09002 * 109.63541 * 54.56141 * 4 2 1 35 35 H 1.08998 * 109.43649 * 294.41911 * 4 2 1 36 36 H 1.08999 * 109.46196 * 178.48947 * 5 4 2 37 37 H 1.09005 * 109.45387 * 58.53178 * 5 4 2 38 38 H 0.96704 * 117.00340 * 180.02562 * 10 8 6 39 39 H 1.09004 * 109.58485 * 185.57442 * 11 6 5 40 40 H 1.09000 * 109.70974 * 65.21953 * 11 6 5 41 41 H 1.09001 * 109.46681 * 60.00232 * 15 13 12 42 42 H 1.08999 * 109.47028 * 300.00400 * 15 13 12 43 43 H 1.07998 * 119.92941 * 359.97434 * 17 16 15 44 44 H 1.08002 * 119.96248 * 179.97438 * 18 17 16 45 45 H 1.07994 * 120.03841 * 180.25555 * 19 18 17 46 46 H 0.96999 * 119.99879 * 179.97438 * 25 24 22 47 47 H 1.08004 * 120.03396 * 359.97188 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 6 3.5713 -0.8498 1.1675 6 6 3.9616 -1.6627 -0.0690 7 1 3.5067 -2.6516 -0.0132 8 6 5.4611 -1.8013 -0.1269 9 8 6.1476 -1.3038 0.7339 10 8 6.0341 -2.4774 -1.1350 11 6 3.4657 -0.9419 -1.3264 12 7 2.0226 -0.6995 -1.1945 13 6 1.1675 -1.1061 -2.1536 14 8 -0.0063 -0.8088 -2.0853 15 6 1.6699 -1.9302 -3.3111 16 6 0.5228 -2.2518 -4.2340 17 6 -0.2201 -3.4019 -4.0379 18 6 -1.2731 -3.7008 -4.8830 19 6 -1.5895 -2.8483 -5.9227 20 6 -0.8420 -1.6958 -6.1256 21 8 -1.1472 -0.8586 -7.1496 22 6 -2.2499 -1.1484 -7.8693 23 1 -2.7994 -2.0572 -7.6731 24 6 -2.6785 -0.2796 -8.8613 25 7 -2.0096 0.8278 -9.0999 26 14 -4.2066 -0.6808 -9.8579 27 1 -4.4497 0.3991 -10.8478 28 1 -4.0091 -1.9690 -10.5699 29 1 -5.3755 -0.7919 -8.9487 30 6 0.2149 -1.3982 -5.2748 31 1 -0.3633 -1.0230 -0.0976 32 1 -0.3633 0.4269 0.9347 33 1 -0.3633 0.5960 -0.8371 34 1 1.6098 -1.7337 1.2889 35 1 1.7690 -0.1771 2.1386 36 1 3.9444 -1.3479 2.0624 37 1 4.0066 0.1473 1.0989 38 1 6.9991 -2.5399 -1.1293 39 1 3.6533 -1.5636 -2.2019 40 1 3.9875 0.0089 -1.4349 41 1 2.1045 -2.8567 -2.9357 42 1 2.4282 -1.3675 -3.8556 43 1 0.0232 -4.0684 -3.2237 44 1 -1.8510 -4.5998 -4.7276 45 1 -2.4145 -3.0801 -6.5798 46 1 -2.3092 1.4353 -9.7942 47 1 0.7953 -0.5003 -5.4273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589302920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:20 Heat of formation + Delta-G solvation = -143.685002 kcal Electronic energy + Delta-G solvation = -30468.221806 eV Core-core repulsion = 26195.018531 eV Total energy + Delta-G solvation = -4273.203275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.94767 -41.11662 -40.57606 -38.64650 -37.91646 -37.06461 -34.61783 -34.24816 -33.93155 -32.91287 -30.84782 -29.24900 -28.25124 -27.22774 -25.98438 -24.42546 -23.48397 -23.12843 -22.17347 -21.26883 -20.12544 -19.39832 -18.99131 -18.72498 -18.07857 -17.55648 -17.09766 -16.76270 -16.66304 -16.42155 -16.09096 -15.97970 -15.49641 -15.28075 -15.20249 -14.75694 -14.61661 -14.52946 -14.29654 -14.15830 -13.92412 -13.57859 -13.50620 -13.23585 -13.16235 -12.93138 -12.73052 -12.51060 -12.44657 -12.35880 -12.20629 -12.16916 -12.11282 -11.99639 -11.95654 -11.73844 -11.54064 -11.18256 -10.79098 -10.13246 -9.62782 -9.57691 -8.94677 -8.46024 -6.14352 0.54986 0.78935 1.16150 1.34019 1.45470 1.50670 1.68077 1.86468 2.18192 2.22281 2.85062 3.16587 3.46124 3.50883 3.63515 3.74235 3.83436 3.87523 4.08953 4.13196 4.16331 4.32739 4.34014 4.39366 4.44234 4.45945 4.61127 4.62408 4.64104 4.71466 4.76549 4.80524 4.85294 4.97923 5.07628 5.09286 5.11753 5.14360 5.33280 5.36192 5.39342 5.65278 5.67768 5.70544 5.75583 5.78555 6.04249 6.24804 6.39817 6.98670 7.01744 7.26921 7.80927 8.77475 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002248 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.963259 B =12453.020597 C =12833.490418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.137 3.863 3 H 0.078 0.922 4 C -0.118 4.118 5 C -0.101 4.101 6 C -0.092 4.092 7 H 0.131 0.869 8 C 0.495 3.505 9 O -0.546 6.546 10 O -0.509 6.509 11 C 0.115 3.885 12 N -0.609 5.609 13 C 0.517 3.483 14 O -0.555 6.555 15 C -0.095 4.095 16 C -0.022 4.022 17 C -0.178 4.178 18 C -0.074 4.074 19 C -0.248 4.248 20 C 0.112 3.888 21 O -0.235 6.235 22 C -0.414 4.414 23 H 0.100 0.900 24 C -0.024 4.024 25 N -0.923 5.923 26 Si 1.019 2.981 27 H -0.271 1.271 28 H -0.255 1.255 29 H -0.260 1.260 30 C -0.191 4.191 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.429 0.571 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.142 0.858 42 H 0.118 0.882 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.116 0.884 46 H 0.272 0.728 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.936 -8.568 21.425 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.035 3.965 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.139 4.139 6 C -0.111 4.111 7 H 0.149 0.851 8 C 0.338 3.662 9 O -0.436 6.436 10 O -0.322 6.322 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.306 3.694 14 O -0.433 6.433 15 C -0.134 4.134 16 C -0.023 4.023 17 C -0.197 4.197 18 C -0.092 4.092 19 C -0.267 4.267 20 C 0.062 3.938 21 O -0.142 6.142 22 C -0.490 4.490 23 H 0.117 0.883 24 C -0.221 4.221 25 N -0.561 5.561 26 Si 0.838 3.162 27 H -0.195 1.195 28 H -0.179 1.179 29 H -0.184 1.184 30 C -0.211 4.211 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.291 0.709 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.160 0.840 42 H 0.136 0.864 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.185 -7.867 21.469 26.908 hybrid contribution -0.111 0.335 -0.828 0.900 sum 14.074 -7.532 20.642 26.094 Atomic orbital electron populations 1.22024 0.93937 1.02272 1.00598 1.21509 0.94730 0.95883 0.84366 0.90446 1.22023 0.94648 1.01782 0.97201 1.21416 0.95605 1.00590 0.96268 1.21449 0.87295 1.04091 0.98309 0.85101 1.23304 0.91796 0.73277 0.77802 1.90740 1.65792 1.46803 1.40255 1.84509 1.31145 1.68769 1.47796 1.21806 0.79472 1.01719 0.97797 1.48145 1.07204 1.58346 1.20604 1.20851 0.85685 0.79543 0.83317 1.90830 1.19055 1.56659 1.76746 1.20812 0.96627 1.02737 0.93257 1.19162 0.96394 0.93581 0.93152 1.20949 0.98044 0.98804 1.01860 1.21121 0.96695 0.98319 0.93024 1.21289 1.04236 0.97419 1.03758 1.19876 0.94869 0.90659 0.88420 1.83930 1.43449 1.48112 1.38699 1.21776 1.03347 1.08370 1.15500 0.88293 1.26601 1.02698 0.94531 0.98319 1.70183 1.41317 1.11971 1.32657 0.84654 0.75526 0.78702 0.77356 1.19506 1.17911 1.18421 1.20200 1.00394 1.02038 0.98437 0.93273 0.92052 0.93560 0.90894 0.88591 0.90138 0.91105 0.70871 0.86325 0.89964 0.83990 0.86409 0.83507 0.83824 0.86605 0.91882 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 7.62 71.98 0.55 -2.50 16 2 C 0.14 2.37 3.51 45.12 0.16 2.53 16 3 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.12 -1.34 5.40 30.82 0.17 -1.17 16 5 C -0.10 -1.06 4.46 30.62 0.14 -0.92 16 6 C -0.09 -0.87 2.78 -11.46 -0.03 -0.90 16 7 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 8 C 0.50 5.65 7.63 71.24 0.54 6.20 16 9 O -0.55 -9.97 16.74 21.96 0.37 -9.60 16 10 O -0.51 -3.54 13.35 -51.40 -0.69 -4.22 16 11 C 0.11 1.28 5.56 86.36 0.48 1.76 16 12 N -0.61 -10.92 2.97 -794.23 -2.36 -13.27 16 13 C 0.52 13.21 7.50 87.66 0.66 13.86 16 14 O -0.56 -19.80 11.60 -3.05 -0.04 -19.84 16 15 C -0.10 -2.12 4.18 29.10 0.12 -1.99 16 16 C -0.02 -0.76 4.37 -19.88 -0.09 -0.84 16 17 C -0.18 -5.68 9.70 22.30 0.22 -5.46 16 18 C -0.07 -2.64 10.04 22.25 0.22 -2.42 16 19 C -0.25 -11.38 9.17 22.39 0.21 -11.18 16 20 C 0.11 5.86 6.65 22.58 0.15 6.01 16 21 O -0.23 -14.77 9.76 -22.64 -0.22 -14.99 16 22 C -0.41 -25.07 9.49 67.92 0.64 -24.42 16 23 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 24 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 25 N -0.92 -58.32 13.67 21.61 0.30 -58.02 16 26 Si 1.02 44.21 29.55 68.60 2.03 46.24 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 29 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 30 C -0.19 -8.54 9.65 22.39 0.22 -8.32 16 31 H 0.05 1.30 6.95 -2.39 -0.02 1.29 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.42 6.54 -2.39 -0.02 1.40 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.84 8.07 -2.39 -0.02 0.82 16 37 H 0.07 0.84 8.13 -2.38 -0.02 0.82 16 38 H 0.43 -0.10 9.10 -74.05 -0.67 -0.78 16 39 H 0.12 0.98 5.93 -2.39 -0.01 0.96 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.14 1.95 7.87 -2.39 -0.02 1.93 16 42 H 0.12 2.22 7.65 -2.39 -0.02 2.20 16 43 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 45 H 0.12 5.40 5.63 -2.91 -0.02 5.38 16 46 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 47 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -86.67 384.55 4.54 -82.13 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.34 Total: 22.32 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 4.81 Total: -30.74 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -2.06 Total: -71.30 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.57 Total: -48.65 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -86.67 4.54 -82.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589302920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.556 kcal (2) G-P(sol) polarization free energy of solvation -86.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds