Wall clock time and date at job start Wed Apr 1 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50042 * 2 1 4 4 C 1.53042 * 109.49713 * 120.06648 * 2 1 3 5 5 C 1.53102 * 109.50754 * 58.61783 * 4 2 1 6 6 C 1.53184 * 109.33129 * 61.34228 * 5 4 2 7 7 N 1.46927 * 108.77801 * 305.36544 * 6 5 4 8 8 C 1.34767 * 120.63442 * 233.58188 * 7 6 5 9 9 O 1.21286 * 120.00257 * 185.42395 * 8 7 6 10 10 C 1.50705 * 119.99912 * 5.43461 * 8 7 6 11 11 C 1.50699 * 109.47190 * 179.97438 * 10 8 7 12 12 C 1.38302 * 119.92849 * 269.72290 * 11 10 8 13 13 C 1.38105 * 120.06916 * 179.72352 * 12 11 10 14 14 C 1.38876 * 119.92506 * 0.56978 * 13 12 11 15 15 O 1.35761 * 120.06591 * 179.67860 * 14 13 12 16 16 C 1.34832 * 117.00100 * 185.64328 * 15 14 13 17 17 H 1.07996 * 119.99916 * 354.94328 * 16 15 14 18 18 C 1.38647 * 119.99921 * 174.93127 * 16 15 14 19 19 N 1.31558 * 120.00132 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99993 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47070 * 89.99683 * 20 18 16 22 22 H 1.48503 * 109.46944 * 209.99307 * 20 18 16 23 23 H 1.48499 * 109.47110 * 329.99552 * 20 18 16 24 24 C 1.38878 * 119.86742 * 359.70341 * 14 13 12 25 25 C 1.38101 * 119.93068 * 359.97438 * 24 14 13 26 26 C 1.46928 * 118.73229 * 53.60846 * 7 6 5 27 27 H 1.09005 * 109.59101 * 66.18263 * 26 7 6 28 28 C 1.50702 * 109.69971 * 186.53314 * 26 7 6 29 29 O 1.20826 * 120.00177 * 49.17659 * 28 26 7 30 30 O 1.34228 * 120.00260 * 229.17740 * 28 26 7 31 31 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47138 * 60.00186 * 1 2 3 33 33 H 1.08994 * 109.46692 * 300.00063 * 1 2 3 34 34 H 1.09003 * 109.46172 * 178.60708 * 4 2 1 35 35 H 1.09005 * 109.45828 * 298.56118 * 4 2 1 36 36 H 1.09011 * 109.48793 * 301.38741 * 5 4 2 37 37 H 1.08997 * 109.51743 * 181.32227 * 5 4 2 38 38 H 1.09002 * 109.59163 * 185.57967 * 6 5 4 39 39 H 1.09001 * 109.58521 * 65.15840 * 6 5 4 40 40 H 1.09008 * 109.46369 * 299.98947 * 10 8 7 41 41 H 1.08994 * 109.47510 * 59.99091 * 10 8 7 42 42 H 1.07994 * 119.96768 * 359.97438 * 12 11 10 43 43 H 1.07999 * 120.03543 * 180.27030 * 13 12 11 44 44 H 0.96992 * 120.00388 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.03743 * 179.97438 * 24 14 13 46 46 H 1.07996 * 119.96407 * 179.97438 * 25 24 14 47 47 H 0.96695 * 117.00852 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 1.5030 -2.1561 1.2655 6 6 2.0140 -2.9041 0.0301 7 7 1.6515 -2.1379 -1.1701 8 6 0.9748 -2.7215 -2.1789 9 8 0.7673 -2.1084 -3.2046 10 6 0.4758 -4.1360 -2.0325 11 6 -0.2432 -4.5479 -3.2913 12 6 -1.6039 -4.3311 -3.4111 13 6 -2.2647 -4.7022 -4.5656 14 6 -1.5635 -5.3043 -5.6021 15 8 -2.2114 -5.6761 -6.7357 16 6 -1.4973 -6.3594 -7.6529 17 1 -0.4390 -6.5162 -7.5059 18 6 -2.1218 -6.8608 -8.7847 19 7 -1.4252 -7.5279 -9.6794 20 14 -3.9524 -6.5892 -9.0392 21 1 -4.1659 -5.3232 -9.7854 22 1 -4.5178 -7.7223 -9.8148 23 1 -4.6286 -6.5062 -7.7197 24 6 -0.1983 -5.5258 -5.4766 25 6 0.4580 -5.1464 -4.3222 26 6 2.0413 -0.7236 -1.2497 27 1 3.1275 -0.6460 -1.2981 28 6 1.4349 -0.0979 -2.4793 29 8 0.2588 -0.2444 -2.7143 30 8 2.2013 0.6222 -3.3135 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 0.5138 0.8900 34 1 3.1305 -0.7441 1.2355 35 1 1.6988 -0.1952 2.1390 36 1 0.4132 -2.1358 1.2535 37 1 1.8475 -2.6637 2.1664 38 1 1.5554 -3.8919 -0.0147 39 1 3.0979 -3.0044 0.0861 40 1 1.3206 -4.8034 -1.8614 41 1 -0.2100 -4.1938 -1.1873 42 1 -2.1495 -3.8675 -2.6026 43 1 -3.3264 -4.5287 -4.6603 44 1 -1.8619 -7.8783 -10.4713 45 1 0.3497 -5.9942 -6.2808 46 1 1.5196 -5.3187 -4.2238 47 1 1.7677 1.0042 -4.0887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589325524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:01 Heat of formation + Delta-G solvation = -105.845912 kcal Electronic energy + Delta-G solvation = -31306.376744 eV Core-core repulsion = 27034.814295 eV Total energy + Delta-G solvation = -4271.562449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48958 -39.37178 -38.90272 -38.00421 -36.55870 -35.89101 -33.90627 -32.50611 -32.26939 -31.38795 -30.17165 -28.16713 -26.78645 -26.01527 -24.80983 -23.91137 -22.11473 -21.92294 -20.98599 -19.95514 -18.72513 -18.18792 -17.83373 -17.35965 -17.21410 -16.45238 -16.17166 -15.63175 -15.28944 -15.03058 -14.72285 -14.62076 -14.35200 -13.99275 -13.92063 -13.67930 -13.54379 -13.41390 -13.35273 -13.10626 -12.63551 -12.48843 -12.31618 -12.15708 -12.10013 -11.71972 -11.70102 -11.57385 -11.39447 -11.21790 -11.09017 -10.87119 -10.82810 -10.69546 -10.60435 -10.11441 -10.09690 -9.33296 -9.33020 -8.83878 -8.79586 -8.16476 -7.24358 -6.37003 -4.03218 2.06229 2.22870 2.28959 2.60233 2.91988 3.08472 3.26357 3.29386 3.44243 4.16104 4.28195 4.29421 4.45287 4.48363 4.54155 4.68003 4.84621 4.91922 4.97159 5.03400 5.13108 5.14406 5.18400 5.24091 5.25901 5.31497 5.37706 5.44793 5.52175 5.62713 5.66746 5.70567 5.74901 5.78646 5.82531 6.13511 6.18910 6.20783 6.39612 6.63056 6.67889 6.85989 7.07022 7.19805 7.28978 7.36721 7.67848 7.85835 7.99692 8.09413 8.29015 8.98589 9.62046 10.70834 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.002486 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.656669 B =11261.960987 C =11627.294186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 H 0.086 0.914 4 C -0.111 4.111 5 C -0.142 4.142 6 C 0.112 3.888 7 N -0.614 5.614 8 C 0.505 3.495 9 O -0.490 6.490 10 C -0.075 4.075 11 C -0.161 4.161 12 C -0.058 4.058 13 C -0.191 4.191 14 C 0.163 3.837 15 O -0.219 6.219 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.220 4.220 25 C -0.058 4.058 26 C 0.163 3.837 27 H 0.098 0.902 28 C 0.479 3.521 29 O -0.467 6.467 30 O -0.524 6.524 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.279 0.721 45 H 0.132 0.868 46 H 0.106 0.894 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 13.232 25.420 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 H 0.104 0.896 4 C -0.148 4.148 5 C -0.180 4.180 6 C -0.010 4.010 7 N -0.354 5.354 8 C 0.294 3.706 9 O -0.362 6.362 10 C -0.115 4.115 11 C -0.162 4.162 12 C -0.076 4.076 13 C -0.210 4.210 14 C 0.111 3.889 15 O -0.124 6.124 16 C -0.463 4.463 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.239 4.239 25 C -0.077 4.077 26 C 0.058 3.942 27 H 0.116 0.884 28 C 0.319 3.681 29 O -0.351 6.351 30 O -0.336 6.336 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.150 0.850 46 H 0.124 0.876 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 8.968 13.243 24.794 29.505 hybrid contribution -0.756 0.267 -0.800 1.132 sum 8.213 13.509 23.994 28.734 Atomic orbital electron populations 1.22006 0.93537 1.03194 1.02401 1.21412 0.97870 0.99286 0.92866 0.89574 1.21535 1.00708 0.95630 0.96949 1.22037 1.02244 0.95949 0.97811 1.21783 1.00538 0.95325 0.83402 1.48032 1.59212 1.08448 1.19684 1.21092 0.77102 0.89354 0.83042 1.90871 1.54273 1.62893 1.28145 1.20424 1.00605 0.92147 0.98338 1.18691 0.93806 1.07819 0.95910 1.20386 0.93431 0.97408 0.96373 1.20146 0.99650 1.07800 0.93384 1.19119 0.90917 0.92671 0.86196 1.83573 1.39494 1.65059 1.24260 1.20773 0.94723 1.31819 0.99015 0.87664 1.24459 1.00068 0.95027 0.94469 1.69646 1.36939 1.34919 1.10483 0.86180 0.83588 0.77929 0.79213 1.19908 1.20847 1.18337 1.21206 0.94650 1.08300 0.99714 1.20544 0.98013 0.96461 0.92649 1.20492 0.99845 0.82572 0.91267 0.88432 1.22402 0.85501 0.76425 0.83768 1.90753 1.17975 1.54453 1.71944 1.84395 1.46657 1.64631 1.37967 0.91803 0.91228 0.92659 0.91328 0.90877 0.90636 0.90294 0.88806 0.90993 0.88939 0.88983 0.87288 0.86602 0.91115 0.85009 0.87637 0.72974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.01 37.16 0.30 -1.12 16 2 C -0.10 -0.70 2.80 -90.50 -0.25 -0.95 16 3 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -0.54 5.43 -26.66 -0.14 -0.68 16 5 C -0.14 -0.69 5.74 -26.58 -0.15 -0.84 16 6 C 0.11 0.68 6.35 -3.71 -0.02 0.65 16 7 N -0.61 -6.25 2.41 -166.53 -0.40 -6.65 16 8 C 0.51 7.18 7.30 -10.99 -0.08 7.10 16 9 O -0.49 -9.30 11.26 -20.16 -0.23 -9.53 16 10 C -0.08 -0.95 4.18 -29.03 -0.12 -1.08 16 11 C -0.16 -2.83 4.38 -104.57 -0.46 -3.29 16 12 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 13 C -0.19 -4.09 9.99 -39.39 -0.39 -4.48 16 14 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 15 O -0.22 -6.04 8.59 0.01 0.00 -6.04 16 16 C -0.39 -11.31 9.95 30.88 0.31 -11.00 16 17 H 0.11 3.13 5.44 -52.49 -0.29 2.85 16 18 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 19 N -0.88 -26.08 13.96 55.48 0.77 -25.31 16 20 Si 0.91 22.36 28.62 -169.99 -4.86 17.50 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 24 C -0.22 -5.03 9.17 -39.39 -0.36 -5.39 16 25 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 26 C 0.16 1.61 3.07 -68.75 -0.21 1.39 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 C 0.48 6.38 5.16 36.01 0.19 6.57 16 29 O -0.47 -7.93 11.97 -27.27 -0.33 -8.26 16 30 O -0.52 -6.00 13.42 -39.25 -0.53 -6.52 16 31 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 32 H 0.07 0.83 5.86 -51.93 -0.30 0.53 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.45 6.33 -51.92 -0.33 0.12 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.09 0.48 5.93 -51.93 -0.31 0.18 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.93 7.67 -51.92 -0.40 0.53 16 41 H 0.09 0.95 7.85 -51.93 -0.41 0.54 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.13 3.14 5.64 -52.48 -0.30 2.85 16 46 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 47 H 0.41 3.51 9.10 45.56 0.41 3.92 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -36.70 373.87 -8.06 -44.75 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.59 Total: 5.06 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.53 Total: -10.64 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.37 Total: -31.96 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.08 Total: -30.36 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.70 -8.06 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589325524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.093 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds