Wall clock time and date at job start Wed Apr 1 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50042 * 2 1 4 4 C 1.53042 * 109.49713 * 120.06648 * 2 1 3 5 5 C 1.53102 * 109.50754 * 58.61783 * 4 2 1 6 6 C 1.53184 * 109.33129 * 61.34228 * 5 4 2 7 7 N 1.46927 * 108.77801 * 305.36544 * 6 5 4 8 8 C 1.34767 * 120.63442 * 233.58188 * 7 6 5 9 9 O 1.21286 * 120.00257 * 185.42395 * 8 7 6 10 10 C 1.50705 * 119.99912 * 5.43461 * 8 7 6 11 11 C 1.50699 * 109.47190 * 179.97438 * 10 8 7 12 12 C 1.38302 * 119.92849 * 269.72290 * 11 10 8 13 13 C 1.38105 * 120.06916 * 179.72352 * 12 11 10 14 14 C 1.38876 * 119.92506 * 0.56978 * 13 12 11 15 15 O 1.35761 * 120.06591 * 179.67860 * 14 13 12 16 16 C 1.34832 * 117.00100 * 185.64328 * 15 14 13 17 17 H 1.07996 * 119.99916 * 354.94328 * 16 15 14 18 18 C 1.38647 * 119.99921 * 174.93127 * 16 15 14 19 19 N 1.31558 * 120.00132 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99993 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47070 * 89.99683 * 20 18 16 22 22 H 1.48503 * 109.46944 * 209.99307 * 20 18 16 23 23 H 1.48499 * 109.47110 * 329.99552 * 20 18 16 24 24 C 1.38878 * 119.86742 * 359.70341 * 14 13 12 25 25 C 1.38101 * 119.93068 * 359.97438 * 24 14 13 26 26 C 1.46928 * 118.73229 * 53.60846 * 7 6 5 27 27 H 1.09005 * 109.59101 * 66.18263 * 26 7 6 28 28 C 1.50702 * 109.69971 * 186.53314 * 26 7 6 29 29 O 1.20826 * 120.00177 * 49.17659 * 28 26 7 30 30 O 1.34228 * 120.00260 * 229.17740 * 28 26 7 31 31 H 1.08999 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47138 * 60.00186 * 1 2 3 33 33 H 1.08994 * 109.46692 * 300.00063 * 1 2 3 34 34 H 1.09003 * 109.46172 * 178.60708 * 4 2 1 35 35 H 1.09005 * 109.45828 * 298.56118 * 4 2 1 36 36 H 1.09011 * 109.48793 * 301.38741 * 5 4 2 37 37 H 1.08997 * 109.51743 * 181.32227 * 5 4 2 38 38 H 1.09002 * 109.59163 * 185.57967 * 6 5 4 39 39 H 1.09001 * 109.58521 * 65.15840 * 6 5 4 40 40 H 1.09008 * 109.46369 * 299.98947 * 10 8 7 41 41 H 1.08994 * 109.47510 * 59.99091 * 10 8 7 42 42 H 1.07994 * 119.96768 * 359.97438 * 12 11 10 43 43 H 1.07999 * 120.03543 * 180.27030 * 13 12 11 44 44 H 0.96992 * 120.00388 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.03743 * 179.97438 * 24 14 13 46 46 H 1.07996 * 119.96407 * 179.97438 * 25 24 14 47 47 H 0.96695 * 117.00852 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 1.5030 -2.1561 1.2655 6 6 2.0140 -2.9041 0.0301 7 7 1.6515 -2.1379 -1.1701 8 6 0.9748 -2.7215 -2.1789 9 8 0.7673 -2.1084 -3.2046 10 6 0.4758 -4.1360 -2.0325 11 6 -0.2432 -4.5479 -3.2913 12 6 -1.6039 -4.3311 -3.4111 13 6 -2.2647 -4.7022 -4.5656 14 6 -1.5635 -5.3043 -5.6021 15 8 -2.2114 -5.6761 -6.7357 16 6 -1.4973 -6.3594 -7.6529 17 1 -0.4390 -6.5162 -7.5059 18 6 -2.1218 -6.8608 -8.7847 19 7 -1.4252 -7.5279 -9.6794 20 14 -3.9524 -6.5892 -9.0392 21 1 -4.1659 -5.3232 -9.7854 22 1 -4.5178 -7.7223 -9.8148 23 1 -4.6286 -6.5062 -7.7197 24 6 -0.1983 -5.5258 -5.4766 25 6 0.4580 -5.1464 -4.3222 26 6 2.0413 -0.7236 -1.2497 27 1 3.1275 -0.6460 -1.2981 28 6 1.4349 -0.0979 -2.4793 29 8 0.2588 -0.2444 -2.7143 30 8 2.2013 0.6222 -3.3135 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 0.5138 0.8900 34 1 3.1305 -0.7441 1.2355 35 1 1.6988 -0.1952 2.1390 36 1 0.4132 -2.1358 1.2535 37 1 1.8475 -2.6637 2.1664 38 1 1.5554 -3.8919 -0.0147 39 1 3.0979 -3.0044 0.0861 40 1 1.3206 -4.8034 -1.8614 41 1 -0.2100 -4.1938 -1.1873 42 1 -2.1495 -3.8675 -2.6026 43 1 -3.3264 -4.5287 -4.6603 44 1 -1.8619 -7.8783 -10.4713 45 1 0.3497 -5.9942 -6.2808 46 1 1.5196 -5.3187 -4.2238 47 1 1.7677 1.0042 -4.0887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589325524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:00 Heat of formation + Delta-G solvation = -129.943675 kcal Electronic energy + Delta-G solvation = -31307.421702 eV Core-core repulsion = 27034.814295 eV Total energy + Delta-G solvation = -4272.607406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36580 -40.95485 -40.05572 -38.99339 -38.13879 -36.90001 -34.71607 -34.51349 -33.11356 -32.58628 -31.83814 -29.21488 -28.01799 -26.98371 -26.40842 -24.55844 -23.75068 -22.99694 -22.16588 -21.00672 -19.83826 -19.42297 -19.14625 -19.10585 -18.30761 -17.34165 -17.06761 -16.78844 -16.50029 -16.14946 -16.04867 -15.71918 -15.58109 -15.47662 -15.24101 -15.11540 -14.61099 -14.41011 -14.31267 -14.24626 -14.09530 -14.01660 -13.81340 -13.08415 -12.98434 -12.97252 -12.73803 -12.57236 -12.46684 -12.36335 -12.28898 -12.10175 -12.07527 -11.94273 -11.70067 -11.32276 -11.30553 -11.00606 -10.93208 -10.38229 -9.82083 -9.62345 -9.00394 -8.52553 -6.25095 0.55368 0.58176 1.25696 1.27989 1.33157 1.48934 1.66739 2.04234 2.19543 2.25889 2.74721 3.03138 3.13518 3.56832 3.76577 3.83516 3.96176 3.99816 4.01670 4.11338 4.13299 4.16089 4.38439 4.41769 4.48057 4.54274 4.60623 4.61196 4.66451 4.76305 4.77849 4.90683 4.95286 4.96590 5.11798 5.18047 5.21892 5.26110 5.29642 5.34820 5.51838 5.55088 5.57304 5.70923 5.76716 5.80544 5.88443 6.20351 6.35795 6.81625 7.06592 7.32336 7.56273 8.59310 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.002486 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.656669 B =11261.960987 C =11627.294186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.106 4.106 5 C -0.139 4.139 6 C 0.101 3.899 7 N -0.605 5.605 8 C 0.499 3.501 9 O -0.549 6.549 10 C -0.074 4.074 11 C -0.135 4.135 12 C -0.059 4.059 13 C -0.195 4.195 14 C 0.120 3.880 15 O -0.247 6.247 16 C -0.400 4.400 17 H 0.080 0.920 18 C 0.010 3.990 19 N -0.923 5.923 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.263 1.263 23 H -0.263 1.263 24 C -0.237 4.237 25 C -0.063 4.063 26 C 0.159 3.841 27 H 0.119 0.881 28 C 0.471 3.529 29 O -0.510 6.510 30 O -0.525 6.525 31 H 0.052 0.948 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.144 0.856 43 H 0.125 0.875 44 H 0.285 0.715 45 H 0.108 0.892 46 H 0.134 0.866 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.497 14.011 30.111 34.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.115 0.885 4 C -0.144 4.144 5 C -0.177 4.177 6 C -0.019 4.019 7 N -0.342 5.342 8 C 0.289 3.711 9 O -0.427 6.427 10 C -0.113 4.113 11 C -0.136 4.136 12 C -0.077 4.077 13 C -0.214 4.214 14 C 0.071 3.929 15 O -0.155 6.155 16 C -0.477 4.477 17 H 0.097 0.903 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.793 3.207 21 H -0.193 1.193 22 H -0.187 1.187 23 H -0.188 1.188 24 C -0.256 4.256 25 C -0.081 4.081 26 C 0.055 3.945 27 H 0.137 0.863 28 C 0.313 3.687 29 O -0.397 6.397 30 O -0.338 6.338 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.162 0.838 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.152 0.848 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 10.026 14.037 29.574 34.237 hybrid contribution -0.867 0.203 -1.928 2.124 sum 9.159 14.241 27.646 32.419 Atomic orbital electron populations 1.21938 0.95177 1.02146 1.01456 1.21468 0.96334 1.00154 0.92925 0.88467 1.21562 1.01746 0.95418 0.95632 1.22041 1.01548 0.95961 0.98158 1.22214 1.02251 0.95530 0.81944 1.48073 1.57512 1.08706 1.19894 1.21248 0.77199 0.89574 0.83075 1.90875 1.56837 1.64300 1.30642 1.20555 1.02249 0.92107 0.96422 1.19282 0.93636 1.03723 0.96970 1.20863 0.94300 0.96397 0.96100 1.20462 1.00350 1.07086 0.93489 1.19635 0.92004 0.94701 0.86577 1.83512 1.39688 1.66865 1.25389 1.20719 0.94078 1.32695 1.00173 0.90261 1.25276 1.04638 0.94832 0.94043 1.69724 1.38802 1.36530 1.11343 0.85222 0.78011 0.78538 0.78951 1.19336 1.18735 1.18772 1.21244 0.94425 1.09172 1.00774 1.20890 0.99500 0.95991 0.91691 1.20797 1.00744 0.82419 0.90558 0.86344 1.23237 0.85182 0.75758 0.84495 1.90729 1.19866 1.55933 1.73144 1.84385 1.46626 1.64449 1.38357 0.92890 0.94662 0.91009 0.89538 0.89558 0.91805 0.87618 0.87394 0.88662 0.85259 0.85515 0.83826 0.85742 0.90508 0.87435 0.84773 0.72056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.01 71.98 0.58 -1.93 16 2 C -0.09 -1.04 2.80 -10.72 -0.03 -1.07 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -0.51 5.43 30.64 0.17 -0.34 16 5 C -0.14 -0.61 5.74 30.69 0.18 -0.43 16 6 C 0.10 0.68 6.35 86.36 0.55 1.23 16 7 N -0.60 -10.13 2.41 -799.18 -1.93 -12.05 16 8 C 0.50 12.81 7.30 87.66 0.64 13.45 16 9 O -0.55 -20.47 11.26 21.53 0.24 -20.23 16 10 C -0.07 -1.55 4.18 29.10 0.12 -1.43 16 11 C -0.14 -4.42 4.38 -19.83 -0.09 -4.51 16 12 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 13 C -0.19 -8.41 9.99 22.39 0.22 -8.19 16 14 C 0.12 6.13 6.65 22.58 0.15 6.28 16 15 O -0.25 -14.40 8.59 -22.88 -0.20 -14.59 16 16 C -0.40 -24.91 9.95 67.92 0.68 -24.23 16 17 H 0.08 5.16 5.44 -2.91 -0.02 5.14 16 18 C 0.01 0.63 5.49 84.83 0.47 1.09 16 19 N -0.92 -57.03 13.96 21.61 0.30 -56.73 16 20 Si 0.97 47.60 28.62 68.60 1.96 49.57 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.26 -12.93 7.11 99.48 0.71 -12.22 16 24 C -0.24 -11.37 9.17 22.39 0.21 -11.17 16 25 C -0.06 -2.38 9.69 22.25 0.22 -2.16 16 26 C 0.16 2.71 3.07 44.23 0.14 2.85 16 27 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 28 C 0.47 12.33 5.16 71.24 0.37 12.70 16 29 O -0.51 -17.64 11.97 30.11 0.36 -17.28 16 30 O -0.52 -11.95 13.42 -51.40 -0.69 -12.64 16 31 H 0.05 0.98 5.97 -2.39 -0.01 0.97 16 32 H 0.03 0.84 5.86 -2.39 -0.01 0.82 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.06 0.47 6.33 -2.38 -0.02 0.46 16 37 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.11 0.45 5.93 -2.39 -0.01 0.43 16 39 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.13 1.84 7.67 -2.38 -0.02 1.82 16 41 H 0.13 1.86 7.85 -2.39 -0.02 1.85 16 42 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 44 H 0.29 16.10 8.31 -92.71 -0.77 15.33 16 45 H 0.11 5.60 5.64 -2.91 -0.02 5.59 16 46 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 47 H 0.42 7.48 9.10 -74.06 -0.67 6.81 16 Total: -1.00 -87.81 373.87 5.17 -82.65 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.34 Total: 21.01 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: 4.77 Total: -19.71 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -1.62 Total: -68.78 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -0.28 Total: -64.74 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.96 Total: 49.57 kcal Total: -87.81 5.17 -82.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589325524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.296 kcal (2) G-P(sol) polarization free energy of solvation -87.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds