Wall clock time and date at job start Wed Apr 1 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.49344 * 2 1 4 4 C 1.53039 * 109.52154 * 120.08134 * 2 1 3 5 5 C 1.53040 * 109.53335 * 181.33080 * 4 2 1 6 6 C 1.53622 * 109.24470 * 298.50978 * 5 4 2 7 7 N 1.46928 * 108.54017 * 54.85773 * 6 5 4 8 8 C 1.34783 * 120.62578 * 126.36721 * 7 6 5 9 9 O 1.21282 * 119.99369 * 184.28348 * 8 7 6 10 10 C 1.50696 * 120.00357 * 4.28882 * 8 7 6 11 11 C 1.50697 * 109.47336 * 179.97438 * 10 8 7 12 12 C 1.38307 * 119.93242 * 89.99494 * 11 10 8 13 13 C 1.38091 * 120.07169 * 180.02562 * 12 11 10 14 14 C 1.38886 * 119.93141 * 359.97438 * 13 12 11 15 15 O 1.35743 * 120.07143 * 180.02562 * 14 13 12 16 16 C 1.34830 * 116.99983 * 5.57722 * 15 14 13 17 17 H 1.08001 * 119.99907 * 354.93840 * 16 15 14 18 18 C 1.38655 * 119.99812 * 174.67004 * 16 15 14 19 19 N 1.31553 * 120.00111 * 0.26725 * 18 16 15 20 20 Si 1.86806 * 119.99887 * 180.27620 * 18 16 15 21 21 H 1.48501 * 109.47022 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47522 * 119.99601 * 20 18 16 23 23 H 1.48499 * 109.46725 * 239.99770 * 20 18 16 24 24 C 1.38885 * 119.86053 * 0.27549 * 14 13 12 25 25 C 1.38103 * 119.92815 * 359.42811 * 24 14 13 26 26 C 1.46915 * 118.73970 * 306.09268 * 7 6 5 27 27 H 1.09000 * 109.59283 * 294.07478 * 26 7 6 28 28 C 1.50701 * 109.58894 * 173.64472 * 26 7 6 29 29 O 1.20824 * 120.00195 * 303.24216 * 28 26 7 30 30 O 1.34234 * 119.99672 * 123.23463 * 28 26 7 31 31 H 1.08995 * 109.47100 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46924 * 300.06606 * 1 2 3 33 33 H 1.09003 * 109.46705 * 60.06079 * 1 2 3 34 34 H 1.08999 * 109.46174 * 301.35188 * 4 2 1 35 35 H 1.08997 * 109.46235 * 61.32763 * 4 2 1 36 36 H 1.09006 * 109.49859 * 58.59439 * 5 4 2 37 37 H 1.09007 * 109.49633 * 178.68227 * 5 4 2 38 38 H 1.08991 * 109.74053 * 295.12017 * 6 5 4 39 39 H 1.09001 * 109.66148 * 174.55263 * 6 5 4 40 40 H 1.08995 * 109.47418 * 59.99506 * 10 8 7 41 41 H 1.09007 * 109.46763 * 299.99496 * 10 8 7 42 42 H 1.07996 * 119.96155 * 359.97438 * 12 11 10 43 43 H 1.07997 * 120.03924 * 180.02562 * 13 12 11 44 44 H 0.97005 * 119.99869 * 180.02562 * 19 18 16 45 45 H 1.07994 * 120.03341 * 179.72451 * 24 14 13 46 46 H 1.07998 * 119.96784 * 180.27376 * 25 24 14 47 47 H 0.96700 * 116.99788 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6942 1.2653 6 6 4.1057 -1.4307 0.0275 7 7 3.5047 -0.8281 -1.1702 8 6 4.2808 -0.3849 -2.1791 9 8 3.7784 0.1805 -3.1272 10 6 5.7726 -0.5920 -2.1291 11 6 6.4025 -0.0094 -3.3680 12 6 6.8181 1.3098 -3.3758 13 6 7.3951 1.8467 -4.5096 14 6 7.5584 1.0605 -5.6428 15 8 8.1258 1.5853 -6.7588 16 6 8.6138 2.8387 -6.6658 17 1 8.4709 3.4080 -5.7592 18 6 9.3041 3.3947 -7.7321 19 7 9.4783 2.7013 -8.8363 20 14 9.9870 5.1285 -7.6004 21 1 9.6581 5.6900 -6.2656 22 1 11.4614 5.0944 -7.7738 23 1 9.3838 5.9796 -8.6573 24 6 7.1353 -0.2623 -5.6336 25 6 6.5645 -0.7952 -4.4945 26 6 2.0414 -0.7235 -1.2498 27 1 1.6057 -1.7214 -1.2982 28 6 1.6569 0.0589 -2.4791 29 8 2.0850 1.1770 -2.6420 30 8 0.8391 -0.4865 -3.3931 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8893 33 1 -0.3633 0.5129 -0.8906 34 1 1.6589 -0.2247 2.1388 35 1 1.6981 -1.7574 1.2350 36 1 3.9161 0.3399 1.2535 37 1 3.9346 -1.1888 2.1663 38 1 3.8351 -2.4851 0.0811 39 1 5.1903 -1.3316 -0.0186 40 1 5.9899 -1.6588 -2.0788 41 1 6.1788 -0.0965 -1.2472 42 1 6.6905 1.9207 -2.4944 43 1 7.7199 2.8767 -4.5150 44 1 9.9615 3.0902 -9.5821 45 1 7.2569 -0.8748 -6.5146 46 1 6.2393 -1.8250 -4.4852 47 1 0.6212 0.0536 -4.1651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589325525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:04 Heat of formation + Delta-G solvation = -116.317113 kcal Electronic energy + Delta-G solvation = -30984.148962 eV Core-core repulsion = 26712.132448 eV Total energy + Delta-G solvation = -4272.016514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.32502 -39.29548 -38.77023 -37.89076 -36.40818 -35.81774 -34.19337 -32.49172 -32.33625 -31.30053 -30.08728 -28.10287 -26.58184 -25.95851 -24.98146 -23.49510 -21.91462 -21.70353 -21.25107 -20.25820 -18.98930 -18.19119 -17.92091 -17.24843 -16.91252 -16.41546 -16.18800 -15.65687 -15.21186 -14.79501 -14.60672 -14.52775 -14.30253 -14.13287 -13.89965 -13.59777 -13.45611 -13.36638 -13.26961 -13.05888 -12.70070 -12.64152 -12.48808 -12.24914 -11.87961 -11.67276 -11.55031 -11.42990 -11.33446 -11.22949 -11.13131 -11.07943 -10.77489 -10.67998 -10.54733 -10.37566 -10.23941 -9.27229 -9.25550 -8.88324 -8.77176 -8.08211 -7.10211 -6.39815 -3.98052 2.08654 2.31753 2.37520 2.61129 2.96980 3.08848 3.17228 3.17448 3.23259 4.01580 4.17152 4.27388 4.43566 4.51532 4.54017 4.74666 4.84197 4.93174 5.02941 5.13077 5.16010 5.18552 5.22070 5.26496 5.28088 5.32741 5.36445 5.37443 5.51936 5.62909 5.65441 5.69177 5.73470 5.79610 5.90347 5.92622 6.17880 6.28097 6.48137 6.70651 6.76171 6.97381 7.10400 7.18853 7.30534 7.43839 7.51126 7.90278 8.03064 8.06000 8.30089 9.06192 9.77303 10.78516 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002393 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.597855 B =11697.944330 C =11993.287642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.087 0.913 4 C -0.111 4.111 5 C -0.140 4.140 6 C 0.111 3.889 7 N -0.617 5.617 8 C 0.503 3.497 9 O -0.490 6.490 10 C -0.074 4.074 11 C -0.171 4.171 12 C -0.053 4.053 13 C -0.232 4.232 14 C 0.158 3.842 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.192 4.192 25 C -0.059 4.059 26 C 0.164 3.836 27 H 0.098 0.902 28 C 0.484 3.516 29 O -0.474 6.474 30 O -0.524 6.524 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.269 0.731 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 -10.507 22.832 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.149 4.149 5 C -0.178 4.178 6 C -0.011 4.011 7 N -0.356 5.356 8 C 0.292 3.708 9 O -0.363 6.363 10 C -0.113 4.113 11 C -0.173 4.173 12 C -0.071 4.071 13 C -0.251 4.251 14 C 0.104 3.896 15 O -0.082 6.082 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.211 4.211 25 C -0.078 4.078 26 C 0.059 3.941 27 H 0.116 0.884 28 C 0.324 3.676 29 O -0.358 6.358 30 O -0.337 6.337 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.134 0.866 46 H 0.125 0.875 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -15.172 -10.139 22.107 28.665 hybrid contribution 0.173 1.259 -0.398 1.332 sum -14.999 -8.880 21.709 27.841 Atomic orbital electron populations 1.21843 0.93785 1.02548 1.02540 1.21503 0.96419 1.00835 0.92921 0.89457 1.21568 0.95413 1.00921 0.96950 1.22059 0.95968 1.01957 0.97819 1.21889 0.98968 0.96889 0.83379 1.48146 1.03920 1.63695 1.19826 1.21278 0.90003 0.77456 0.82052 1.90903 1.73550 1.38422 1.33397 1.20415 0.89886 1.02305 0.98728 1.18624 1.08530 0.95182 0.94928 1.20494 0.96000 0.93680 0.96973 1.21099 1.08730 1.01143 0.94108 1.19386 0.91416 0.92074 0.86738 1.83973 1.64618 1.30716 1.28914 1.21382 1.34519 0.88068 1.02624 0.89052 1.25286 0.96582 1.00045 0.94666 1.70053 1.38891 1.37080 1.03886 0.85649 0.78642 0.80400 0.78754 1.19103 1.20163 1.20171 1.20139 1.08118 0.93711 0.99162 1.20377 0.97247 0.98064 0.92075 1.20603 0.82593 0.99676 0.91244 0.88447 1.22373 0.75428 0.86203 0.83639 1.90766 1.48498 1.21212 1.75361 1.84402 1.63067 1.51725 1.34482 0.91864 0.91546 0.92509 0.90830 0.91245 0.90983 0.90139 0.90925 0.88739 0.88874 0.89049 0.87909 0.85611 0.92139 0.86577 0.87476 0.73017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.02 37.16 0.34 -0.66 16 2 C -0.10 -0.79 2.31 -90.49 -0.21 -1.00 16 3 H 0.09 0.91 8.02 -51.93 -0.42 0.50 16 4 C -0.11 -0.59 5.17 -26.69 -0.14 -0.73 16 5 C -0.14 -0.74 6.10 -26.39 -0.16 -0.90 16 6 C 0.11 0.71 6.36 -3.49 -0.02 0.69 16 7 N -0.62 -6.68 2.97 -166.28 -0.49 -7.17 16 8 C 0.50 7.50 7.51 -10.98 -0.08 7.42 16 9 O -0.49 -9.73 11.14 -20.04 -0.22 -9.95 16 10 C -0.07 -0.97 4.21 -29.04 -0.12 -1.09 16 11 C -0.17 -3.13 4.38 -104.57 -0.46 -3.58 16 12 C -0.05 -1.07 9.69 -39.61 -0.38 -1.45 16 13 C -0.23 -5.43 9.17 -39.40 -0.36 -5.79 16 14 C 0.16 4.05 6.65 -39.10 -0.26 3.79 16 15 O -0.18 -5.34 9.76 0.07 0.00 -5.34 16 16 C -0.39 -11.34 9.49 30.89 0.29 -11.04 16 17 H 0.09 2.48 5.20 -52.49 -0.27 2.21 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -26.06 13.67 55.48 0.76 -25.30 16 20 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.19 -4.34 9.99 -39.39 -0.39 -4.74 16 25 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 26 C 0.16 1.71 2.81 -68.76 -0.19 1.52 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 C 0.48 6.85 4.34 36.01 0.16 7.01 16 29 O -0.47 -8.78 14.66 -27.22 -0.40 -9.18 16 30 O -0.52 -6.30 13.42 -39.27 -0.53 -6.83 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 7.41 -51.93 -0.38 0.07 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.52 5.96 -51.93 -0.31 0.21 16 40 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 41 H 0.09 0.99 7.45 -51.93 -0.39 0.60 16 42 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.13 2.95 5.64 -52.49 -0.30 2.66 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 46 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 47 H 0.41 3.78 9.10 45.56 0.41 4.19 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -38.45 383.29 -8.46 -46.91 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.85 Total: 5.97 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -2.48 Total: -11.10 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.27 Total: -32.47 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.15 Total: -31.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.45 -8.46 -46.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589325525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.403 kcal (2) G-P(sol) polarization free energy of solvation -38.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds