Wall clock time and date at job start Wed Apr 1 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.49344 * 2 1 4 4 C 1.53039 * 109.52154 * 120.08134 * 2 1 3 5 5 C 1.53040 * 109.53335 * 181.33080 * 4 2 1 6 6 C 1.53622 * 109.24470 * 298.50978 * 5 4 2 7 7 N 1.46928 * 108.54017 * 54.85773 * 6 5 4 8 8 C 1.34783 * 120.62578 * 126.36721 * 7 6 5 9 9 O 1.21282 * 119.99369 * 184.28348 * 8 7 6 10 10 C 1.50696 * 120.00357 * 4.28882 * 8 7 6 11 11 C 1.50697 * 109.47336 * 179.97438 * 10 8 7 12 12 C 1.38307 * 119.93242 * 89.99494 * 11 10 8 13 13 C 1.38091 * 120.07169 * 180.02562 * 12 11 10 14 14 C 1.38886 * 119.93141 * 359.97438 * 13 12 11 15 15 O 1.35743 * 120.07143 * 180.02562 * 14 13 12 16 16 C 1.34830 * 116.99983 * 5.57722 * 15 14 13 17 17 H 1.08001 * 119.99907 * 354.93840 * 16 15 14 18 18 C 1.38655 * 119.99812 * 174.67004 * 16 15 14 19 19 N 1.31553 * 120.00111 * 0.26725 * 18 16 15 20 20 Si 1.86806 * 119.99887 * 180.27620 * 18 16 15 21 21 H 1.48501 * 109.47022 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47522 * 119.99601 * 20 18 16 23 23 H 1.48499 * 109.46725 * 239.99770 * 20 18 16 24 24 C 1.38885 * 119.86053 * 0.27549 * 14 13 12 25 25 C 1.38103 * 119.92815 * 359.42811 * 24 14 13 26 26 C 1.46915 * 118.73970 * 306.09268 * 7 6 5 27 27 H 1.09000 * 109.59283 * 294.07478 * 26 7 6 28 28 C 1.50701 * 109.58894 * 173.64472 * 26 7 6 29 29 O 1.20824 * 120.00195 * 303.24216 * 28 26 7 30 30 O 1.34234 * 119.99672 * 123.23463 * 28 26 7 31 31 H 1.08995 * 109.47100 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46924 * 300.06606 * 1 2 3 33 33 H 1.09003 * 109.46705 * 60.06079 * 1 2 3 34 34 H 1.08999 * 109.46174 * 301.35188 * 4 2 1 35 35 H 1.08997 * 109.46235 * 61.32763 * 4 2 1 36 36 H 1.09006 * 109.49859 * 58.59439 * 5 4 2 37 37 H 1.09007 * 109.49633 * 178.68227 * 5 4 2 38 38 H 1.08991 * 109.74053 * 295.12017 * 6 5 4 39 39 H 1.09001 * 109.66148 * 174.55263 * 6 5 4 40 40 H 1.08995 * 109.47418 * 59.99506 * 10 8 7 41 41 H 1.09007 * 109.46763 * 299.99496 * 10 8 7 42 42 H 1.07996 * 119.96155 * 359.97438 * 12 11 10 43 43 H 1.07997 * 120.03924 * 180.02562 * 13 12 11 44 44 H 0.97005 * 119.99869 * 180.02562 * 19 18 16 45 45 H 1.07994 * 120.03341 * 179.72451 * 24 14 13 46 46 H 1.07998 * 119.96784 * 180.27376 * 25 24 14 47 47 H 0.96700 * 116.99788 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5715 -0.6942 1.2653 6 6 4.1057 -1.4307 0.0275 7 7 3.5047 -0.8281 -1.1702 8 6 4.2808 -0.3849 -2.1791 9 8 3.7784 0.1805 -3.1272 10 6 5.7726 -0.5920 -2.1291 11 6 6.4025 -0.0094 -3.3680 12 6 6.8181 1.3098 -3.3758 13 6 7.3951 1.8467 -4.5096 14 6 7.5584 1.0605 -5.6428 15 8 8.1258 1.5853 -6.7588 16 6 8.6138 2.8387 -6.6658 17 1 8.4709 3.4080 -5.7592 18 6 9.3041 3.3947 -7.7321 19 7 9.4783 2.7013 -8.8363 20 14 9.9870 5.1285 -7.6004 21 1 9.6581 5.6900 -6.2656 22 1 11.4614 5.0944 -7.7738 23 1 9.3838 5.9796 -8.6573 24 6 7.1353 -0.2623 -5.6336 25 6 6.5645 -0.7952 -4.4945 26 6 2.0414 -0.7235 -1.2498 27 1 1.6057 -1.7214 -1.2982 28 6 1.6569 0.0589 -2.4791 29 8 2.0850 1.1770 -2.6420 30 8 0.8391 -0.4865 -3.3931 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8893 33 1 -0.3633 0.5129 -0.8906 34 1 1.6589 -0.2247 2.1388 35 1 1.6981 -1.7574 1.2350 36 1 3.9161 0.3399 1.2535 37 1 3.9346 -1.1888 2.1663 38 1 3.8351 -2.4851 0.0811 39 1 5.1903 -1.3316 -0.0186 40 1 5.9899 -1.6588 -2.0788 41 1 6.1788 -0.0965 -1.2472 42 1 6.6905 1.9207 -2.4944 43 1 7.7199 2.8767 -4.5150 44 1 9.9615 3.0902 -9.5821 45 1 7.2569 -0.8748 -6.5146 46 1 6.2393 -1.8250 -4.4852 47 1 0.6212 0.0536 -4.1651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589325525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:03 Heat of formation + Delta-G solvation = -142.626265 kcal Electronic energy + Delta-G solvation = -30985.289813 eV Core-core repulsion = 26712.132448 eV Total energy + Delta-G solvation = -4273.157365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27749 -40.86147 -40.06251 -38.88923 -38.06792 -36.91871 -34.98732 -34.40792 -33.08743 -32.72169 -31.81313 -29.15787 -27.80307 -27.04865 -26.54596 -24.29238 -23.67210 -22.70204 -22.27234 -21.32544 -19.97260 -19.81321 -19.17543 -18.85261 -18.27367 -17.35196 -17.13671 -16.73445 -16.40488 -16.16508 -16.10424 -15.86090 -15.52263 -15.35541 -15.16991 -14.92782 -14.59540 -14.53231 -14.32664 -14.11822 -13.94781 -13.78676 -13.61472 -13.36077 -13.03387 -12.89199 -12.84706 -12.52383 -12.40157 -12.31146 -12.26561 -12.18175 -12.11615 -11.98404 -11.64125 -11.60376 -11.23308 -11.21348 -10.83718 -10.40024 -9.79766 -9.70917 -8.92810 -8.50036 -6.18269 0.58258 0.62682 1.20115 1.31620 1.40389 1.50577 1.61622 2.03324 2.14431 2.15471 2.80307 3.13397 3.48666 3.54331 3.72919 3.79459 3.92460 4.00592 4.01188 4.09697 4.12802 4.16176 4.36105 4.38133 4.43510 4.55559 4.55942 4.61868 4.66668 4.76540 4.79791 4.84808 4.89119 5.03970 5.10198 5.12986 5.15576 5.24028 5.25391 5.27037 5.46567 5.48599 5.53955 5.68587 5.74550 5.75247 6.00345 6.17264 6.31753 6.94455 7.02525 7.27670 7.75324 8.73676 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002393 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.597855 B =11697.944330 C =11993.287642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.055 0.945 4 C -0.107 4.107 5 C -0.138 4.138 6 C 0.100 3.900 7 N -0.608 5.608 8 C 0.496 3.504 9 O -0.552 6.552 10 C -0.071 4.071 11 C -0.145 4.145 12 C -0.060 4.060 13 C -0.245 4.245 14 C 0.113 3.887 15 O -0.233 6.233 16 C -0.415 4.415 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.254 1.254 22 H -0.263 1.263 23 H -0.268 1.268 24 C -0.205 4.205 25 C -0.055 4.055 26 C 0.160 3.840 27 H 0.124 0.876 28 C 0.480 3.520 29 O -0.527 6.527 30 O -0.522 6.522 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.273 0.727 45 H 0.114 0.886 46 H 0.148 0.852 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.232 -12.674 27.512 34.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.073 0.927 4 C -0.144 4.144 5 C -0.176 4.176 6 C -0.020 4.020 7 N -0.345 5.345 8 C 0.286 3.714 9 O -0.430 6.430 10 C -0.110 4.110 11 C -0.146 4.146 12 C -0.078 4.078 13 C -0.264 4.264 14 C 0.063 3.937 15 O -0.139 6.139 16 C -0.491 4.491 17 H 0.115 0.885 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.839 3.161 21 H -0.178 1.178 22 H -0.188 1.188 23 H -0.193 1.193 24 C -0.225 4.225 25 C -0.073 4.073 26 C 0.056 3.944 27 H 0.142 0.858 28 C 0.322 3.678 29 O -0.415 6.415 30 O -0.335 6.335 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.166 0.834 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -16.153 -12.379 26.885 33.719 hybrid contribution 0.212 1.693 -1.584 2.328 sum -15.941 -10.686 25.301 31.756 Atomic orbital electron populations 1.21849 0.92867 1.03680 1.02101 1.21499 0.97188 0.99203 0.93317 0.92693 1.21601 0.95510 1.01825 0.95451 1.22074 0.95822 1.01154 0.98510 1.22357 0.99767 0.98280 0.81623 1.48220 1.03890 1.62296 1.20070 1.21480 0.90755 0.77054 0.82154 1.90912 1.74614 1.41403 1.36025 1.20547 0.88613 1.04957 0.96902 1.19248 1.04783 0.94059 0.96533 1.20878 0.95197 0.95108 0.96655 1.21195 1.09574 1.00715 0.94902 1.19928 0.93011 0.93740 0.87005 1.83932 1.67330 1.31416 1.31269 1.21844 1.35288 0.88557 1.03401 0.88499 1.26615 0.96537 1.05025 0.93876 1.70191 1.40909 1.39697 1.05088 0.84518 0.78193 0.74026 0.79350 1.17756 1.18791 1.19298 1.20444 1.08496 0.92794 1.00731 1.20861 0.95545 1.00065 0.90860 1.20928 0.82682 1.00565 0.90235 0.85791 1.23248 0.74311 0.85844 0.84398 1.90736 1.50465 1.23606 1.76698 1.84390 1.62599 1.51719 1.34787 0.89875 0.90228 0.94780 0.89640 0.89014 0.92813 0.87154 0.87921 0.87248 0.84585 0.85739 0.85156 0.86776 0.91759 0.86819 0.83387 0.72105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.02 71.99 0.65 -1.00 16 2 C -0.09 -1.28 2.31 -10.71 -0.02 -1.31 16 3 H 0.05 1.12 8.02 -2.39 -0.02 1.10 16 4 C -0.11 -0.65 5.17 30.62 0.16 -0.49 16 5 C -0.14 -0.78 6.10 30.82 0.19 -0.60 16 6 C 0.10 0.72 6.36 86.51 0.55 1.27 16 7 N -0.61 -10.93 2.97 -798.37 -2.37 -13.30 16 8 C 0.50 13.35 7.51 87.65 0.66 14.01 16 9 O -0.55 -21.56 11.14 21.44 0.24 -21.32 16 10 C -0.07 -1.54 4.21 29.10 0.12 -1.42 16 11 C -0.15 -4.93 4.38 -19.83 -0.09 -5.02 16 12 C -0.06 -2.37 9.69 22.25 0.22 -2.16 16 13 C -0.24 -11.94 9.17 22.39 0.21 -11.73 16 14 C 0.11 6.17 6.65 22.58 0.15 6.32 16 15 O -0.23 -14.98 9.76 -22.67 -0.22 -15.20 16 16 C -0.41 -25.72 9.49 67.92 0.64 -25.08 16 17 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 19 N -0.92 -58.75 13.67 21.61 0.30 -58.45 16 20 Si 1.02 45.12 29.55 68.60 2.03 47.15 16 21 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 C -0.21 -9.57 9.99 22.39 0.22 -9.35 16 25 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 26 C 0.16 2.95 2.81 44.23 0.12 3.07 16 27 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 28 C 0.48 13.48 4.34 71.24 0.31 13.78 16 29 O -0.53 -20.22 14.66 30.07 0.44 -19.78 16 30 O -0.52 -12.47 13.42 -51.46 -0.69 -13.16 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.03 0.53 7.41 -2.39 -0.02 0.51 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 38 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.11 0.49 5.96 -2.39 -0.01 0.48 16 40 H 0.14 1.88 8.03 -2.39 -0.02 1.86 16 41 H 0.12 1.96 7.45 -2.38 -0.02 1.95 16 42 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.11 5.69 5.64 -2.91 -0.02 5.67 16 44 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 45 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 46 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 47 H 0.42 8.06 9.10 -74.06 -0.67 7.38 16 Total: -1.00 -94.53 383.29 4.82 -89.71 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.33 Total: 26.78 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.77 Total: -22.43 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -2.07 Total: -71.75 kcal Atomic # 8 Polarization: -69.23 SS G_CDS: -0.23 Total: -69.47 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -94.53 4.82 -89.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589325525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.914 kcal (2) G-P(sol) polarization free energy of solvation -94.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds