Wall clock time and date at job start Wed Apr 1 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.49577 * 2 1 4 4 C 1.53036 * 109.49403 * 239.90499 * 2 1 3 5 5 C 1.53045 * 109.53496 * 178.68070 * 4 2 1 6 6 H 1.08996 * 109.52930 * 301.39919 * 5 4 2 7 7 C 1.50699 * 109.49882 * 181.31149 * 5 4 2 8 8 O 1.20832 * 119.99693 * 0.17082 * 7 5 4 9 9 O 1.34222 * 120.00226 * 179.88609 * 7 5 4 10 10 C 1.53194 * 109.30958 * 61.36555 * 5 4 2 11 11 N 1.46928 * 108.77708 * 305.36340 * 10 5 4 12 12 C 1.34780 * 120.62731 * 233.63300 * 11 10 5 13 13 O 1.21285 * 119.99318 * 179.97438 * 12 11 10 14 14 C 1.50692 * 120.00183 * 359.97438 * 12 11 10 15 15 C 1.50703 * 109.46788 * 179.97438 * 14 12 11 16 16 C 1.38301 * 119.93516 * 269.72341 * 15 14 12 17 17 C 1.38100 * 120.06897 * 179.72615 * 16 15 14 18 18 C 1.38879 * 119.93065 * 0.57110 * 17 16 15 19 19 O 1.35753 * 120.06991 * 179.68050 * 18 17 16 20 20 C 1.34828 * 117.00191 * 174.48853 * 19 18 17 21 21 H 1.07998 * 119.99594 * 5.05935 * 20 19 18 22 22 C 1.38647 * 119.99994 * 185.05904 * 20 19 18 23 23 N 1.31558 * 120.00179 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47041 * 60.00562 * 24 22 20 26 26 H 1.48503 * 109.47150 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47313 * 299.99870 * 24 22 20 28 28 C 1.38880 * 119.86015 * 359.70447 * 18 17 16 29 29 C 1.38094 * 119.93343 * 0.02562 * 28 18 17 30 30 C 1.46924 * 118.73669 * 53.61031 * 11 10 5 31 31 H 1.08996 * 109.46869 * 299.93744 * 1 2 3 32 32 H 1.09000 * 109.46799 * 59.93474 * 1 2 3 33 33 H 1.08993 * 109.46955 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46426 * 58.66172 * 4 2 1 35 35 H 1.08997 * 109.46490 * 298.70124 * 4 2 1 36 36 H 0.96704 * 117.00123 * 180.27818 * 9 7 5 37 37 H 1.08999 * 109.59173 * 65.15089 * 10 5 4 38 38 H 1.09004 * 109.58741 * 185.43442 * 10 5 4 39 39 H 1.08994 * 109.47193 * 299.99725 * 14 12 11 40 40 H 1.08996 * 109.47356 * 60.00217 * 14 12 11 41 41 H 1.07997 * 119.95953 * 359.97438 * 16 15 14 42 42 H 1.08002 * 120.03460 * 180.27779 * 17 16 15 43 43 H 0.97000 * 120.00108 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.03290 * 180.02562 * 28 18 17 45 45 H 1.07997 * 119.96687 * 179.97438 * 29 28 18 46 46 H 1.08997 * 109.58733 * 66.17830 * 30 11 10 47 47 H 1.09001 * 109.58216 * 186.60746 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 3.5709 -0.6953 -1.2659 6 1 3.9165 0.3384 -1.2545 7 6 4.0722 -1.3796 -2.5114 8 8 3.2864 -1.8399 -3.3057 9 8 5.3913 -1.4728 -2.7414 10 6 4.1053 -1.4266 -0.0304 11 7 3.5046 -0.8288 1.1698 12 6 4.2813 -0.3850 2.1780 13 8 3.7733 0.1071 3.1633 14 6 5.7807 -0.5001 2.0809 15 6 6.4096 0.0650 3.3284 16 6 6.7525 1.4037 3.3828 17 6 7.3238 1.9257 4.5266 18 6 7.5648 1.1023 5.6187 19 8 8.1321 1.6111 6.7422 20 6 8.2336 0.7865 7.8040 21 1 7.9471 -0.2507 7.7116 22 6 8.7058 1.2701 9.0146 23 7 9.0543 2.5337 9.1274 24 14 8.8470 0.1274 10.4856 25 1 9.7722 -0.9874 10.1594 26 1 9.3744 0.8828 11.6504 27 1 7.5075 -0.4215 10.8165 28 6 7.2244 -0.2428 5.5589 29 6 6.6483 -0.7576 4.4143 30 6 2.0414 -0.7235 1.2498 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6581 -0.2251 -2.1389 35 1 1.6967 -1.7576 -1.2349 36 1 5.6647 -1.9169 -3.5557 37 1 3.8376 -2.4818 -0.0860 38 1 5.1899 -1.3267 0.0127 39 1 6.0585 -1.5488 1.9766 40 1 6.1325 0.0571 1.2127 41 1 6.5697 2.0423 2.5313 42 1 7.5873 2.9722 4.5701 43 1 9.3842 2.8721 9.9744 44 1 7.4102 -0.8856 6.4067 45 1 6.3839 -1.8036 4.3671 46 1 1.6053 -1.7212 1.2984 47 1 1.7639 -0.1573 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603360647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:26 Heat of formation + Delta-G solvation = -137.135625 kcal Electronic energy + Delta-G solvation = -29949.735543 eV Core-core repulsion = 25676.816271 eV Total energy + Delta-G solvation = -4272.919273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19642 -40.09481 -38.93430 -37.81994 -36.59584 -36.36849 -34.22898 -32.70794 -32.40899 -31.30486 -30.11179 -27.66297 -26.70110 -25.60999 -25.04824 -24.66827 -21.93435 -21.49690 -21.02007 -20.36121 -19.15336 -18.47351 -17.94137 -17.37270 -16.97919 -16.68955 -16.57858 -15.94608 -15.38677 -15.04552 -14.67950 -14.58693 -14.47387 -14.25617 -13.93184 -13.63970 -13.59110 -13.45796 -13.22309 -13.04757 -12.67503 -12.57362 -12.49366 -12.29594 -12.02570 -11.83367 -11.81927 -11.50682 -11.36859 -11.26957 -11.21402 -11.10818 -10.91013 -10.79169 -10.70127 -10.60061 -10.40723 -9.70385 -9.28963 -8.89323 -8.77976 -8.10962 -7.12378 -6.40839 -3.99439 1.67108 2.26145 2.29411 2.45062 2.68997 2.90861 3.15672 3.17690 3.19826 4.00212 4.00379 4.20847 4.28886 4.42629 4.53157 4.64283 4.82441 4.86824 4.91559 5.03151 5.12085 5.14821 5.21010 5.25423 5.28013 5.32654 5.35455 5.36703 5.49545 5.59989 5.66434 5.73536 5.76030 5.78867 5.88228 5.92421 6.02324 6.24763 6.27894 6.45729 6.73992 6.95209 7.08775 7.21893 7.28623 7.39750 7.40845 7.49078 7.87959 8.04364 8.21576 9.04790 9.75493 10.77232 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.002031 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.251364 B =13782.439233 C =14407.333746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.078 0.922 4 C -0.099 4.099 5 C -0.098 4.098 6 H 0.117 0.883 7 C 0.487 3.513 8 O -0.512 6.512 9 O -0.513 6.513 10 C 0.120 3.880 11 N -0.622 5.622 12 C 0.514 3.486 13 O -0.513 6.513 14 C -0.080 4.080 15 C -0.171 4.171 16 C -0.059 4.059 17 C -0.191 4.191 18 C 0.157 3.843 19 O -0.178 6.178 20 C -0.391 4.391 21 H 0.091 0.909 22 C 0.039 3.961 23 N -0.864 5.864 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.232 4.232 29 C -0.056 4.056 30 C 0.112 3.888 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.103 0.897 46 H 0.066 0.934 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.653 -8.924 -23.664 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.097 0.903 4 C -0.137 4.137 5 C -0.118 4.118 6 H 0.134 0.866 7 C 0.328 3.672 8 O -0.399 6.399 9 O -0.325 6.325 10 C -0.004 4.004 11 N -0.358 5.358 12 C 0.303 3.697 13 O -0.386 6.386 14 C -0.120 4.120 15 C -0.172 4.172 16 C -0.077 4.077 17 C -0.211 4.211 18 C 0.103 3.897 19 O -0.081 6.081 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.165 4.165 23 N -0.499 5.499 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.251 4.251 29 C -0.074 4.074 30 C -0.010 4.010 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.272 0.728 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.061 -8.195 -22.682 26.964 hybrid contribution 0.205 -0.956 -0.010 0.978 sum -11.855 -9.151 -22.692 27.188 Atomic orbital electron populations 1.21739 0.93767 1.02308 1.02390 1.21519 0.96522 1.00274 0.94186 0.90309 1.21530 0.91017 1.02440 0.98682 1.21495 0.98167 1.01805 0.90303 0.86556 1.23282 0.80028 0.76368 0.87485 1.90740 1.56902 1.44924 1.47337 1.84550 1.26076 1.74101 1.47755 1.21570 0.99559 0.96673 0.82602 1.48170 1.06651 1.62782 1.18177 1.21115 0.89833 0.76848 0.81888 1.90750 1.75244 1.42362 1.30280 1.20461 0.90203 1.02677 0.98628 1.18629 1.08702 0.94523 0.95386 1.20387 0.97042 0.93832 0.96489 1.20150 1.08403 0.99367 0.93133 1.19383 0.90452 0.91668 0.88207 1.83976 1.66915 1.39604 1.17650 1.21274 1.45317 0.92830 0.87301 0.89146 1.25280 0.96500 0.96735 0.98021 1.70031 1.40239 1.13350 1.26246 0.85789 0.79003 0.79109 0.79572 1.19532 1.20306 1.19508 1.21099 1.08578 0.95838 0.99631 1.20500 0.96551 0.97947 0.92439 1.21690 0.79505 1.00833 0.99009 0.91962 0.92155 0.92307 0.90507 0.90607 0.72850 0.90785 0.87905 0.88960 0.88856 0.87424 0.86563 0.92017 0.85609 0.87863 0.91528 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.20 37.16 0.34 -0.51 16 2 C -0.11 -0.74 2.87 -90.50 -0.26 -0.99 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.10 -0.65 3.74 -26.69 -0.10 -0.74 16 5 C -0.10 -0.61 2.78 -91.65 -0.25 -0.87 16 6 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 7 C 0.49 3.37 7.63 36.01 0.27 3.65 16 8 O -0.51 -5.06 16.74 -18.75 -0.31 -5.37 16 9 O -0.51 -2.51 13.36 -39.24 -0.52 -3.04 16 10 C 0.12 0.81 5.55 -3.71 -0.02 0.79 16 11 N -0.62 -6.05 2.97 -172.77 -0.51 -6.57 16 12 C 0.51 6.93 7.69 -10.99 -0.08 6.84 16 13 O -0.51 -9.44 15.45 5.55 0.09 -9.35 16 14 C -0.08 -0.97 4.18 -29.04 -0.12 -1.10 16 15 C -0.17 -2.95 4.38 -104.57 -0.46 -3.41 16 16 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 17 C -0.19 -4.18 9.99 -39.39 -0.39 -4.57 16 18 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 19 O -0.18 -5.20 9.76 0.05 0.00 -5.20 16 20 C -0.39 -11.15 9.49 30.88 0.29 -10.85 16 21 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 24 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 29 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 30 C 0.11 1.00 5.72 -3.71 -0.02 0.98 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 35 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 36 H 0.41 0.45 9.10 45.56 0.41 0.86 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.60 5.95 -51.93 -0.31 0.29 16 39 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 40 H 0.09 0.90 7.63 -51.93 -0.40 0.50 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 45 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 1.09 7.00 -51.93 -0.36 0.72 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -36.48 390.80 -7.77 -44.25 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.84 Total: 3.14 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.29 Total: -14.64 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.25 Total: -31.51 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.75 Total: -22.96 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.48 -7.77 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603360647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.888 kcal (2) G-P(sol) polarization free energy of solvation -36.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds