Wall clock time and date at job start Wed Apr 1 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.49577 * 2 1 4 4 C 1.53036 * 109.49403 * 239.90499 * 2 1 3 5 5 C 1.53045 * 109.53496 * 178.68070 * 4 2 1 6 6 H 1.08996 * 109.52930 * 301.39919 * 5 4 2 7 7 C 1.50699 * 109.49882 * 181.31149 * 5 4 2 8 8 O 1.20832 * 119.99693 * 0.17082 * 7 5 4 9 9 O 1.34222 * 120.00226 * 179.88609 * 7 5 4 10 10 C 1.53194 * 109.30958 * 61.36555 * 5 4 2 11 11 N 1.46928 * 108.77708 * 305.36340 * 10 5 4 12 12 C 1.34780 * 120.62731 * 233.63300 * 11 10 5 13 13 O 1.21285 * 119.99318 * 179.97438 * 12 11 10 14 14 C 1.50692 * 120.00183 * 359.97438 * 12 11 10 15 15 C 1.50703 * 109.46788 * 179.97438 * 14 12 11 16 16 C 1.38301 * 119.93516 * 269.72341 * 15 14 12 17 17 C 1.38100 * 120.06897 * 179.72615 * 16 15 14 18 18 C 1.38879 * 119.93065 * 0.57110 * 17 16 15 19 19 O 1.35753 * 120.06991 * 179.68050 * 18 17 16 20 20 C 1.34828 * 117.00191 * 174.48853 * 19 18 17 21 21 H 1.07998 * 119.99594 * 5.05935 * 20 19 18 22 22 C 1.38647 * 119.99994 * 185.05904 * 20 19 18 23 23 N 1.31558 * 120.00179 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47041 * 60.00562 * 24 22 20 26 26 H 1.48503 * 109.47150 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47313 * 299.99870 * 24 22 20 28 28 C 1.38880 * 119.86015 * 359.70447 * 18 17 16 29 29 C 1.38094 * 119.93343 * 0.02562 * 28 18 17 30 30 C 1.46924 * 118.73669 * 53.61031 * 11 10 5 31 31 H 1.08996 * 109.46869 * 299.93744 * 1 2 3 32 32 H 1.09000 * 109.46799 * 59.93474 * 1 2 3 33 33 H 1.08993 * 109.46955 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46426 * 58.66172 * 4 2 1 35 35 H 1.08997 * 109.46490 * 298.70124 * 4 2 1 36 36 H 0.96704 * 117.00123 * 180.27818 * 9 7 5 37 37 H 1.08999 * 109.59173 * 65.15089 * 10 5 4 38 38 H 1.09004 * 109.58741 * 185.43442 * 10 5 4 39 39 H 1.08994 * 109.47193 * 299.99725 * 14 12 11 40 40 H 1.08996 * 109.47356 * 60.00217 * 14 12 11 41 41 H 1.07997 * 119.95953 * 359.97438 * 16 15 14 42 42 H 1.08002 * 120.03460 * 180.27779 * 17 16 15 43 43 H 0.97000 * 120.00108 * 179.97438 * 23 22 20 44 44 H 1.08002 * 120.03290 * 180.02562 * 28 18 17 45 45 H 1.07997 * 119.96687 * 179.97438 * 29 28 18 46 46 H 1.08997 * 109.58733 * 66.17830 * 30 11 10 47 47 H 1.09001 * 109.58216 * 186.60746 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2482 5 6 3.5709 -0.6953 -1.2659 6 1 3.9165 0.3384 -1.2545 7 6 4.0722 -1.3796 -2.5114 8 8 3.2864 -1.8399 -3.3057 9 8 5.3913 -1.4728 -2.7414 10 6 4.1053 -1.4266 -0.0304 11 7 3.5046 -0.8288 1.1698 12 6 4.2813 -0.3850 2.1780 13 8 3.7733 0.1071 3.1633 14 6 5.7807 -0.5001 2.0809 15 6 6.4096 0.0650 3.3284 16 6 6.7525 1.4037 3.3828 17 6 7.3238 1.9257 4.5266 18 6 7.5648 1.1023 5.6187 19 8 8.1321 1.6111 6.7422 20 6 8.2336 0.7865 7.8040 21 1 7.9471 -0.2507 7.7116 22 6 8.7058 1.2701 9.0146 23 7 9.0543 2.5337 9.1274 24 14 8.8470 0.1274 10.4856 25 1 9.7722 -0.9874 10.1594 26 1 9.3744 0.8828 11.6504 27 1 7.5075 -0.4215 10.8165 28 6 7.2244 -0.2428 5.5589 29 6 6.6483 -0.7576 4.4143 30 6 2.0414 -0.7235 1.2498 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6581 -0.2251 -2.1389 35 1 1.6967 -1.7576 -1.2349 36 1 5.6647 -1.9169 -3.5557 37 1 3.8376 -2.4818 -0.0860 38 1 5.1899 -1.3267 0.0127 39 1 6.0585 -1.5488 1.9766 40 1 6.1325 0.0571 1.2127 41 1 6.5697 2.0423 2.5313 42 1 7.5873 2.9722 4.5701 43 1 9.3842 2.8721 9.9744 44 1 7.4102 -0.8856 6.4067 45 1 6.3839 -1.8036 4.3671 46 1 1.6053 -1.7212 1.2984 47 1 1.7639 -0.1573 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603360647.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:25 Heat of formation + Delta-G solvation = -161.792118 kcal Electronic energy + Delta-G solvation = -29950.804729 eV Core-core repulsion = 25676.816271 eV Total energy + Delta-G solvation = -4273.988458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82927 -41.03547 -40.50193 -38.80495 -37.98597 -37.06020 -34.97536 -34.36226 -33.33529 -32.71856 -31.75244 -28.78216 -27.60704 -27.12689 -26.00300 -25.50151 -23.61353 -22.53470 -21.87349 -21.16579 -20.05133 -19.80771 -18.95548 -18.80991 -18.21145 -17.34984 -17.29531 -16.75124 -16.50839 -16.34507 -15.90638 -15.84921 -15.65653 -15.46397 -15.17433 -15.04597 -14.61348 -14.42593 -14.26487 -14.19588 -13.98133 -13.61693 -13.57530 -13.08083 -13.01375 -12.92596 -12.77142 -12.50318 -12.43819 -12.33968 -12.28999 -12.20283 -12.13142 -11.87306 -11.86973 -11.68184 -11.47238 -11.16243 -10.86853 -10.69428 -9.74042 -9.70083 -8.87625 -8.46069 -6.14184 0.64140 0.69300 1.16506 1.34303 1.45438 1.50955 1.68465 1.88229 2.18519 2.22388 2.84530 3.16939 3.49154 3.54491 3.64679 3.75160 3.84366 3.89024 4.02599 4.07737 4.16096 4.21501 4.37680 4.42839 4.46119 4.50141 4.62313 4.67542 4.68901 4.69407 4.75747 4.82206 4.86438 4.90141 5.05179 5.11213 5.15960 5.17260 5.27358 5.32715 5.37600 5.52803 5.60298 5.65820 5.73884 5.80092 6.04255 6.23377 6.38713 6.98402 7.02249 7.24325 7.80178 8.77176 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.019906 B = 0.002031 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.251364 B =13782.439233 C =14407.333746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.095 4.095 5 C -0.095 4.095 6 H 0.126 0.874 7 C 0.497 3.503 8 O -0.545 6.545 9 O -0.508 6.508 10 C 0.116 3.884 11 N -0.611 5.611 12 C 0.515 3.485 13 O -0.575 6.575 14 C -0.079 4.079 15 C -0.145 4.145 16 C -0.057 4.057 17 C -0.206 4.206 18 C 0.111 3.889 19 O -0.234 6.234 20 C -0.414 4.414 21 H 0.100 0.900 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.019 2.981 25 H -0.255 1.255 26 H -0.271 1.271 27 H -0.260 1.260 28 C -0.244 4.244 29 C -0.060 4.060 30 C 0.109 3.891 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.430 0.570 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.138 0.862 46 H 0.079 0.921 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.392 -11.496 -26.825 31.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.132 4.132 5 C -0.115 4.115 6 H 0.144 0.856 7 C 0.340 3.660 8 O -0.435 6.435 9 O -0.321 6.321 10 C -0.007 4.007 11 N -0.344 5.344 12 C 0.305 3.695 13 O -0.453 6.453 14 C -0.118 4.118 15 C -0.146 4.146 16 C -0.075 4.075 17 C -0.226 4.226 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.490 4.490 21 H 0.117 0.883 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.838 3.162 25 H -0.179 1.179 26 H -0.195 1.195 27 H -0.185 1.185 28 C -0.263 4.263 29 C -0.078 4.078 30 C -0.013 4.013 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.292 0.708 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.165 0.835 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.156 0.844 46 H 0.097 0.903 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.805 -10.814 -25.958 30.899 hybrid contribution 0.277 -0.236 0.539 0.651 sum -12.529 -11.050 -25.419 30.417 Atomic orbital electron populations 1.21735 0.93077 1.02786 1.02503 1.21418 0.97072 0.99611 0.93457 0.90992 1.21469 0.91480 1.02200 0.98095 1.21450 0.97802 1.02248 0.89951 0.85627 1.23230 0.80294 0.75469 0.87047 1.90744 1.57847 1.46448 1.48504 1.84504 1.24752 1.73964 1.48912 1.21830 1.00503 0.97210 0.81131 1.48121 1.06774 1.61334 1.18187 1.21210 0.90369 0.76247 0.81707 1.90756 1.76269 1.45485 1.32808 1.20610 0.88986 1.05249 0.96987 1.19247 1.04963 0.93745 0.96612 1.20871 0.95276 0.95102 0.96206 1.20441 1.09031 0.99267 0.93816 1.19949 0.92351 0.93434 0.88155 1.83936 1.70054 1.40973 1.19102 1.21773 1.45767 0.93466 0.88006 0.88286 1.26607 0.95828 0.98641 1.01103 1.70183 1.42742 1.15790 1.27280 0.84650 0.79574 0.76955 0.75030 1.17897 1.19496 1.18456 1.21224 1.09251 0.94875 1.00986 1.20928 0.95360 0.99996 0.91510 1.21754 0.79282 1.01391 0.98891 0.92542 0.91375 0.91670 0.90536 0.90705 0.70827 0.89366 0.85979 0.85306 0.84927 0.83497 0.87058 0.91856 0.86555 0.84432 0.90267 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.20 71.98 0.66 -0.79 16 2 C -0.10 -1.13 2.87 -10.72 -0.03 -1.16 16 3 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.09 -0.96 3.74 30.62 0.11 -0.85 16 5 C -0.09 -0.82 2.78 -11.46 -0.03 -0.85 16 6 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 7 C 0.50 5.04 7.63 71.24 0.54 5.59 16 8 O -0.55 -9.30 16.74 21.95 0.37 -8.93 16 9 O -0.51 -2.78 13.36 -51.34 -0.69 -3.46 16 10 C 0.12 1.00 5.55 86.36 0.48 1.48 16 11 N -0.61 -9.69 2.97 -818.90 -2.43 -12.13 16 12 C 0.51 12.07 7.69 87.65 0.67 12.75 16 13 O -0.57 -20.31 15.45 -3.04 -0.05 -20.36 16 14 C -0.08 -1.50 4.18 29.10 0.12 -1.38 16 15 C -0.14 -4.50 4.38 -19.83 -0.09 -4.59 16 16 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 17 C -0.21 -9.24 9.99 22.39 0.22 -9.01 16 18 C 0.11 5.82 6.65 22.58 0.15 5.97 16 19 O -0.23 -14.65 9.76 -22.75 -0.22 -14.87 16 20 C -0.41 -25.00 9.49 67.92 0.64 -24.36 16 21 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 22 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 23 N -0.92 -58.06 13.67 21.61 0.30 -57.76 16 24 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 25 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 28 C -0.24 -11.18 9.17 22.39 0.21 -10.98 16 29 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 30 C 0.11 1.74 5.72 86.36 0.49 2.23 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.82 8.07 -2.39 -0.02 0.80 16 35 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 36 H 0.43 -0.73 9.10 -74.05 -0.67 -1.41 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.12 0.62 5.95 -2.38 -0.01 0.61 16 39 H 0.13 1.64 7.89 -2.39 -0.02 1.62 16 40 H 0.13 1.60 7.63 -2.39 -0.02 1.58 16 41 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.12 5.41 5.64 -2.91 -0.02 5.40 16 45 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.07 1.55 7.00 -2.39 -0.02 1.53 16 Total: -1.00 -87.40 390.80 4.69 -82.70 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.33 Total: 19.30 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 5.06 Total: -30.61 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -2.14 Total: -69.89 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -0.59 Total: -47.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -87.40 4.69 -82.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603360647.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.089 kcal (2) G-P(sol) polarization free energy of solvation -87.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds