Wall clock time and date at job start Wed Apr 1 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.69905 * 2 1 4 4 C 1.53627 * 109.66045 * 120.59091 * 2 1 3 5 5 C 1.53037 * 109.23681 * 174.54841 * 4 2 1 6 6 C 1.53035 * 109.54429 * 298.51242 * 5 4 2 7 7 H 1.09009 * 109.52413 * 301.39862 * 6 5 4 8 8 C 1.50696 * 109.50353 * 181.32118 * 6 5 4 9 9 O 1.20830 * 119.99960 * 0.15486 * 8 6 5 10 10 O 1.34234 * 120.00233 * 180.16460 * 8 6 5 11 11 C 1.53192 * 109.31121 * 61.36347 * 6 5 4 12 12 N 1.46920 * 108.77591 * 305.36898 * 11 6 5 13 13 C 1.34785 * 120.63066 * 233.58524 * 12 11 6 14 14 O 1.21285 * 119.99657 * 185.80632 * 13 12 11 15 15 C 1.50694 * 119.99818 * 5.80283 * 13 12 11 16 16 C 1.50704 * 109.46901 * 180.02562 * 15 13 12 17 17 C 1.38295 * 119.92733 * 269.72554 * 16 15 13 18 18 C 1.38101 * 120.07016 * 179.72802 * 17 16 15 19 19 C 1.38884 * 119.92703 * 0.56320 * 18 17 16 20 20 O 1.35753 * 120.07015 * 179.68071 * 19 18 17 21 21 C 1.34821 * 116.99938 * 174.72230 * 20 19 18 22 22 H 1.07998 * 120.00551 * 5.04153 * 21 20 19 23 23 C 1.38657 * 120.00259 * 185.03539 * 21 20 19 24 24 N 1.31560 * 119.99829 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00402 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46984 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47177 * 119.99871 * 25 23 21 28 28 H 1.48497 * 109.46916 * 240.00206 * 25 23 21 29 29 C 1.38877 * 119.86207 * 359.71529 * 19 18 17 30 30 C 1.38100 * 119.93335 * 359.97438 * 29 19 18 31 31 H 1.09001 * 109.47430 * 174.54262 * 1 2 3 32 32 H 1.08996 * 109.47387 * 294.54874 * 1 2 3 33 33 H 1.09003 * 109.46902 * 54.54734 * 1 2 3 34 34 H 1.08994 * 109.63445 * 54.55990 * 4 2 1 35 35 H 1.08997 * 109.45884 * 294.42932 * 4 2 1 36 36 H 1.09002 * 109.46121 * 178.49017 * 5 4 2 37 37 H 1.09003 * 109.46067 * 58.53698 * 5 4 2 38 38 H 0.96700 * 116.99680 * 179.97438 * 10 8 6 39 39 H 1.09008 * 109.58827 * 185.58044 * 11 6 5 40 40 H 1.09004 * 109.58506 * 65.15856 * 11 6 5 41 41 H 1.08994 * 109.47788 * 60.00007 * 15 13 12 42 42 H 1.09003 * 109.47209 * 299.99946 * 15 13 12 43 43 H 1.08004 * 119.97045 * 359.97438 * 17 16 15 44 44 H 1.08003 * 120.04134 * 180.27267 * 18 17 16 45 45 H 0.96998 * 120.00267 * 180.02562 * 24 23 21 46 46 H 1.07999 * 120.03731 * 180.02562 * 29 19 18 47 47 H 1.07992 * 119.97241 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7362 1.2454 5 6 3.5711 -0.8498 1.1677 6 6 3.9615 -1.6627 -0.0687 7 1 3.5066 -2.6518 -0.0130 8 6 5.4610 -1.8015 -0.1267 9 8 6.1475 -1.3039 0.7342 10 8 6.0340 -2.4777 -1.1348 11 6 3.4657 -0.9420 -1.3263 12 7 2.0226 -0.6996 -1.1944 13 6 1.1675 -1.1062 -2.1536 14 8 -0.0064 -0.8087 -2.0853 15 6 1.6699 -1.9304 -3.3108 16 6 0.5231 -2.2509 -4.2345 17 6 -0.2169 -3.4032 -4.0417 18 6 -1.2719 -3.6970 -4.8829 19 6 -1.5822 -2.8398 -5.9306 20 8 -2.6146 -3.1290 -6.7633 21 6 -2.9310 -2.2030 -7.6906 22 1 -2.3216 -1.3181 -7.8000 23 6 -4.0389 -2.3866 -8.5040 24 7 -4.7815 -3.4643 -8.3705 25 14 -4.4769 -1.1038 -9.7893 26 1 -3.4905 0.0051 -9.7382 27 1 -4.4524 -1.7256 -11.1376 28 1 -5.8356 -0.5714 -9.5142 29 6 -0.8336 -1.6863 -6.1252 30 6 0.2162 -1.3948 -5.2766 31 1 -0.3634 -1.0230 -0.0977 32 1 -0.3634 0.4269 0.9347 33 1 -0.3633 0.5961 -0.8372 34 1 1.6096 -1.7336 1.2890 35 1 1.7688 -0.1775 2.1390 36 1 3.9442 -1.3479 2.0625 37 1 4.0065 0.1472 1.0991 38 1 6.9990 -2.5395 -1.1293 39 1 3.6533 -1.5637 -2.2018 40 1 3.9878 0.0090 -1.4322 41 1 2.1045 -2.8568 -2.9356 42 1 2.4282 -1.3678 -3.8554 43 1 0.0281 -4.0722 -3.2299 44 1 -1.8522 -4.5948 -4.7292 45 1 -5.5563 -3.5929 -8.9397 46 1 -1.0726 -1.0175 -6.9387 47 1 0.7985 -0.4979 -5.4270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603380269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:31 Heat of formation + Delta-G solvation = -120.115916 kcal Electronic energy + Delta-G solvation = -30301.367229 eV Core-core repulsion = 26029.185986 eV Total energy + Delta-G solvation = -4272.181243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24187 -40.27226 -38.94146 -37.60167 -36.60582 -36.36719 -33.63744 -33.19370 -32.33936 -31.04192 -30.11070 -28.37124 -26.63418 -25.38897 -25.02177 -23.75751 -22.31478 -21.93176 -20.85996 -20.41362 -19.09041 -18.49823 -17.94369 -17.35734 -16.97699 -16.79610 -16.42932 -15.81508 -15.48804 -14.79789 -14.69565 -14.52392 -14.30302 -14.06273 -13.97492 -13.69042 -13.64419 -13.45484 -13.18669 -12.90045 -12.67407 -12.56343 -12.45096 -12.30136 -12.00531 -11.84902 -11.58019 -11.46171 -11.33844 -11.29220 -11.22146 -11.18928 -10.97451 -10.79397 -10.69526 -10.56431 -10.39337 -9.28523 -9.03572 -8.80087 -8.77373 -8.11113 -7.12252 -6.41492 -3.99873 1.67457 2.26361 2.29181 2.46427 2.70165 2.90256 3.14816 3.16463 3.21768 3.99831 4.01446 4.21999 4.31981 4.46575 4.58501 4.71729 4.84983 4.89648 4.94771 5.01989 5.12076 5.19131 5.26089 5.27708 5.30048 5.35345 5.43820 5.48994 5.56363 5.67837 5.68552 5.76068 5.79687 5.88116 6.01939 6.09977 6.23086 6.26502 6.45702 6.58211 6.73976 6.95167 7.09292 7.26144 7.29715 7.40033 7.41031 7.49008 7.87846 8.04036 8.27305 9.04461 9.75388 10.76776 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.002119 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.798368 B =13210.283653 C =13766.721797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.141 3.859 3 H 0.070 0.930 4 C -0.131 4.131 5 C -0.104 4.104 6 C -0.097 4.097 7 H 0.116 0.884 8 C 0.487 3.513 9 O -0.512 6.512 10 O -0.513 6.513 11 C 0.121 3.879 12 N -0.620 5.620 13 C 0.514 3.486 14 O -0.504 6.504 15 C -0.083 4.083 16 C -0.169 4.169 17 C -0.059 4.059 18 C -0.191 4.191 19 C 0.157 3.843 20 O -0.179 6.179 21 C -0.390 4.390 22 H 0.092 0.908 23 C 0.038 3.962 24 N -0.863 5.863 25 Si 0.941 3.059 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.232 4.232 30 C -0.056 4.056 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.412 0.588 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.402 4.598 17.134 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.169 4.169 5 C -0.142 4.142 6 C -0.117 4.117 7 H 0.134 0.866 8 C 0.328 3.672 9 O -0.400 6.400 10 O -0.325 6.325 11 C -0.003 4.003 12 N -0.356 5.356 13 C 0.303 3.697 14 O -0.378 6.378 15 C -0.122 4.122 16 C -0.170 4.170 17 C -0.078 4.078 18 C -0.210 4.210 19 C 0.103 3.897 20 O -0.082 6.082 21 C -0.466 4.466 22 H 0.110 0.890 23 C -0.166 4.166 24 N -0.499 5.499 25 Si 0.766 3.234 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.202 1.202 29 C -0.251 4.251 30 C -0.074 4.074 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.271 0.729 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.116 4.635 17.250 26.162 hybrid contribution 0.671 0.594 -0.532 1.042 sum 19.787 5.228 16.718 26.427 Atomic orbital electron populations 1.22206 0.92100 1.04135 1.01192 1.21398 0.96219 0.94934 0.83583 0.91175 1.22123 0.94486 1.02022 0.98268 1.21452 0.96201 1.00620 0.95902 1.21500 0.87541 1.03581 0.99110 0.86560 1.23312 0.91766 0.73976 0.78152 1.90739 1.65065 1.45289 1.38858 1.84554 1.29448 1.69620 1.48870 1.21570 0.81575 1.00570 0.96627 1.48240 1.06270 1.59702 1.21396 1.21041 0.86088 0.79651 0.82921 1.90797 1.16885 1.54538 1.75558 1.20509 0.98076 0.99749 0.93899 1.18621 1.00785 0.98248 0.99394 1.20381 0.94266 0.95854 0.97253 1.20151 1.01574 1.01922 0.97399 1.19382 0.88307 0.92467 0.89554 1.83975 1.42191 1.42326 1.39735 1.21370 1.11670 1.01591 1.11975 0.89044 1.25289 0.95033 0.97804 0.98472 1.70050 1.15950 1.25723 1.38135 0.85650 0.78836 0.79486 0.79469 1.19121 1.20187 1.20161 1.21101 0.99747 1.00393 1.03887 1.20495 0.96054 0.96950 0.93945 0.91445 0.93909 0.89983 0.90981 0.90012 0.90534 0.90684 0.72867 0.87908 0.90815 0.88988 0.89141 0.87471 0.86604 0.92126 0.85634 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.62 37.16 0.28 -1.30 16 2 C 0.14 1.27 3.51 -67.37 -0.24 1.04 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -0.89 5.40 -26.39 -0.14 -1.04 16 5 C -0.10 -0.67 4.46 -26.69 -0.12 -0.79 16 6 C -0.10 -0.61 2.78 -91.66 -0.25 -0.86 16 7 H 0.12 0.66 8.14 -51.92 -0.42 0.24 16 8 C 0.49 3.38 7.63 36.00 0.27 3.65 16 9 O -0.51 -5.09 16.74 -18.75 -0.31 -5.41 16 10 O -0.51 -2.53 13.35 -39.27 -0.52 -3.05 16 11 C 0.12 0.81 5.56 -3.71 -0.02 0.79 16 12 N -0.62 -5.92 2.97 -164.96 -0.49 -6.41 16 13 C 0.51 6.66 7.50 -10.98 -0.08 6.58 16 14 O -0.50 -8.62 11.60 5.55 0.06 -8.55 16 15 C -0.08 -0.99 4.18 -29.04 -0.12 -1.11 16 16 C -0.17 -2.87 4.38 -104.57 -0.46 -3.32 16 17 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 18 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 19 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 20 O -0.18 -5.20 9.76 0.07 0.00 -5.20 16 21 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 22 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 23 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 24 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 25 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 29 C -0.23 -5.17 9.17 -39.40 -0.36 -5.53 16 30 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 31 H 0.07 0.90 6.95 -51.93 -0.36 0.54 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.15 6.55 -51.93 -0.34 0.81 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 37 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 38 H 0.41 0.47 9.10 45.56 0.41 0.88 16 39 H 0.10 0.60 5.93 -51.92 -0.31 0.29 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 42 H 0.09 0.89 7.65 -51.93 -0.40 0.49 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 44 H 0.12 2.43 8.06 -52.48 -0.42 2.00 16 45 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 47 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -35.66 384.55 -7.94 -43.60 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.75 Total: 3.83 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.46 Total: -15.53 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.27 Total: -31.30 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.77 Total: -22.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.66 -7.94 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603380269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.512 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds