Wall clock time and date at job start Wed Apr 1 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.69905 * 2 1 4 4 C 1.53627 * 109.66045 * 120.59091 * 2 1 3 5 5 C 1.53037 * 109.23681 * 174.54841 * 4 2 1 6 6 C 1.53035 * 109.54429 * 298.51242 * 5 4 2 7 7 H 1.09009 * 109.52413 * 301.39862 * 6 5 4 8 8 C 1.50696 * 109.50353 * 181.32118 * 6 5 4 9 9 O 1.20830 * 119.99960 * 0.15486 * 8 6 5 10 10 O 1.34234 * 120.00233 * 180.16460 * 8 6 5 11 11 C 1.53192 * 109.31121 * 61.36347 * 6 5 4 12 12 N 1.46920 * 108.77591 * 305.36898 * 11 6 5 13 13 C 1.34785 * 120.63066 * 233.58524 * 12 11 6 14 14 O 1.21285 * 119.99657 * 185.80632 * 13 12 11 15 15 C 1.50694 * 119.99818 * 5.80283 * 13 12 11 16 16 C 1.50704 * 109.46901 * 180.02562 * 15 13 12 17 17 C 1.38295 * 119.92733 * 269.72554 * 16 15 13 18 18 C 1.38101 * 120.07016 * 179.72802 * 17 16 15 19 19 C 1.38884 * 119.92703 * 0.56320 * 18 17 16 20 20 O 1.35753 * 120.07015 * 179.68071 * 19 18 17 21 21 C 1.34821 * 116.99938 * 174.72230 * 20 19 18 22 22 H 1.07998 * 120.00551 * 5.04153 * 21 20 19 23 23 C 1.38657 * 120.00259 * 185.03539 * 21 20 19 24 24 N 1.31560 * 119.99829 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00402 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46984 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47177 * 119.99871 * 25 23 21 28 28 H 1.48497 * 109.46916 * 240.00206 * 25 23 21 29 29 C 1.38877 * 119.86207 * 359.71529 * 19 18 17 30 30 C 1.38100 * 119.93335 * 359.97438 * 29 19 18 31 31 H 1.09001 * 109.47430 * 174.54262 * 1 2 3 32 32 H 1.08996 * 109.47387 * 294.54874 * 1 2 3 33 33 H 1.09003 * 109.46902 * 54.54734 * 1 2 3 34 34 H 1.08994 * 109.63445 * 54.55990 * 4 2 1 35 35 H 1.08997 * 109.45884 * 294.42932 * 4 2 1 36 36 H 1.09002 * 109.46121 * 178.49017 * 5 4 2 37 37 H 1.09003 * 109.46067 * 58.53698 * 5 4 2 38 38 H 0.96700 * 116.99680 * 179.97438 * 10 8 6 39 39 H 1.09008 * 109.58827 * 185.58044 * 11 6 5 40 40 H 1.09004 * 109.58506 * 65.15856 * 11 6 5 41 41 H 1.08994 * 109.47788 * 60.00007 * 15 13 12 42 42 H 1.09003 * 109.47209 * 299.99946 * 15 13 12 43 43 H 1.08004 * 119.97045 * 359.97438 * 17 16 15 44 44 H 1.08003 * 120.04134 * 180.27267 * 18 17 16 45 45 H 0.96998 * 120.00267 * 180.02562 * 24 23 21 46 46 H 1.07999 * 120.03731 * 180.02562 * 29 19 18 47 47 H 1.07992 * 119.97241 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0469 -0.7362 1.2454 5 6 3.5711 -0.8498 1.1677 6 6 3.9615 -1.6627 -0.0687 7 1 3.5066 -2.6518 -0.0130 8 6 5.4610 -1.8015 -0.1267 9 8 6.1475 -1.3039 0.7342 10 8 6.0340 -2.4777 -1.1348 11 6 3.4657 -0.9420 -1.3263 12 7 2.0226 -0.6996 -1.1944 13 6 1.1675 -1.1062 -2.1536 14 8 -0.0064 -0.8087 -2.0853 15 6 1.6699 -1.9304 -3.3108 16 6 0.5231 -2.2509 -4.2345 17 6 -0.2169 -3.4032 -4.0417 18 6 -1.2719 -3.6970 -4.8829 19 6 -1.5822 -2.8398 -5.9306 20 8 -2.6146 -3.1290 -6.7633 21 6 -2.9310 -2.2030 -7.6906 22 1 -2.3216 -1.3181 -7.8000 23 6 -4.0389 -2.3866 -8.5040 24 7 -4.7815 -3.4643 -8.3705 25 14 -4.4769 -1.1038 -9.7893 26 1 -3.4905 0.0051 -9.7382 27 1 -4.4524 -1.7256 -11.1376 28 1 -5.8356 -0.5714 -9.5142 29 6 -0.8336 -1.6863 -6.1252 30 6 0.2162 -1.3948 -5.2766 31 1 -0.3634 -1.0230 -0.0977 32 1 -0.3634 0.4269 0.9347 33 1 -0.3633 0.5961 -0.8372 34 1 1.6096 -1.7336 1.2890 35 1 1.7688 -0.1775 2.1390 36 1 3.9442 -1.3479 2.0625 37 1 4.0065 0.1472 1.0991 38 1 6.9990 -2.5395 -1.1293 39 1 3.6533 -1.5637 -2.2018 40 1 3.9878 0.0090 -1.4322 41 1 2.1045 -2.8568 -2.9356 42 1 2.4282 -1.3678 -3.8554 43 1 0.0281 -4.0722 -3.2299 44 1 -1.8522 -4.5948 -4.7292 45 1 -5.5563 -3.5929 -8.9397 46 1 -1.0726 -1.0175 -6.9387 47 1 0.7985 -0.4979 -5.4270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603380269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:31 Heat of formation + Delta-G solvation = -144.011106 kcal Electronic energy + Delta-G solvation = -30302.403402 eV Core-core repulsion = 26029.185986 eV Total energy + Delta-G solvation = -4273.217416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.91175 -41.08758 -40.57463 -38.65238 -37.89124 -37.05313 -34.59634 -34.18233 -33.90106 -32.36447 -31.74197 -29.15424 -28.09221 -26.99927 -25.91279 -24.38969 -23.60808 -23.22909 -21.97309 -21.22267 -19.96330 -19.81015 -18.98073 -18.81631 -18.03504 -17.56577 -17.10966 -16.68985 -16.48758 -16.29946 -16.10115 -15.76187 -15.49464 -15.21913 -15.17518 -14.74638 -14.60904 -14.52683 -14.34234 -14.23792 -13.98790 -13.59550 -13.50452 -13.21034 -13.15023 -12.95666 -12.71542 -12.50099 -12.43870 -12.26119 -12.23380 -12.14335 -12.09667 -11.96762 -11.93910 -11.72430 -11.53072 -11.15391 -10.79630 -10.03582 -9.73248 -9.58501 -8.86206 -8.46532 -6.14319 0.64652 0.70294 1.17408 1.34261 1.42880 1.52942 1.74403 1.90127 2.18007 2.24095 2.84737 3.17436 3.51669 3.54967 3.67298 3.76788 3.85335 3.91955 4.08042 4.13291 4.18533 4.21904 4.34388 4.44245 4.46469 4.50588 4.62541 4.63801 4.69136 4.74597 4.81234 4.83493 4.86641 4.98885 5.08460 5.11786 5.12752 5.16510 5.33289 5.36840 5.40880 5.59969 5.66192 5.72919 5.74390 5.81283 6.04566 6.24970 6.45725 6.98342 7.02640 7.33903 7.80494 8.77242 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020511 B = 0.002119 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.798368 B =13210.283653 C =13766.721797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.139 3.861 3 H 0.081 0.919 4 C -0.121 4.121 5 C -0.101 4.101 6 C -0.094 4.094 7 H 0.127 0.873 8 C 0.496 3.504 9 O -0.546 6.546 10 O -0.508 6.508 11 C 0.117 3.883 12 N -0.610 5.610 13 C 0.513 3.487 14 O -0.557 6.557 15 C -0.082 4.082 16 C -0.141 4.141 17 C -0.056 4.056 18 C -0.206 4.206 19 C 0.111 3.889 20 O -0.235 6.235 21 C -0.412 4.412 22 H 0.100 0.900 23 C -0.025 4.025 24 N -0.922 5.922 25 Si 1.019 2.981 26 H -0.252 1.252 27 H -0.266 1.266 28 H -0.269 1.269 29 C -0.244 4.244 30 C -0.060 4.060 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.429 0.571 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.110 0.890 45 H 0.272 0.728 46 H 0.115 0.885 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.144 5.822 18.631 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.037 3.963 3 H 0.099 0.901 4 C -0.159 4.159 5 C -0.138 4.138 6 C -0.114 4.114 7 H 0.145 0.855 8 C 0.339 3.661 9 O -0.437 6.437 10 O -0.322 6.322 11 C -0.006 4.006 12 N -0.344 5.344 13 C 0.303 3.697 14 O -0.435 6.435 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.074 4.074 18 C -0.225 4.225 19 C 0.061 3.939 20 O -0.142 6.142 21 C -0.488 4.488 22 H 0.117 0.883 23 C -0.222 4.222 24 N -0.560 5.560 25 Si 0.839 3.161 26 H -0.176 1.176 27 H -0.191 1.191 28 H -0.194 1.194 29 C -0.263 4.263 30 C -0.078 4.078 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.291 0.709 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.133 0.867 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 22.967 5.856 18.788 30.245 hybrid contribution -0.170 0.208 -0.692 0.742 sum 22.797 6.064 18.096 29.731 Atomic orbital electron populations 1.22030 0.94080 1.02091 1.00649 1.21473 0.94550 0.95949 0.84349 0.90067 1.22034 0.94730 1.01650 0.97500 1.21401 0.95520 1.00659 0.96233 1.21466 0.87301 1.04008 0.98619 0.85525 1.23303 0.91781 0.73260 0.77800 1.90742 1.65815 1.46869 1.40232 1.84510 1.31132 1.68758 1.47783 1.21804 0.79485 1.01738 0.97527 1.48185 1.07252 1.58417 1.20581 1.21096 0.85632 0.79470 0.83512 1.90826 1.19069 1.56709 1.76864 1.20642 0.96492 1.02055 0.92945 1.19225 1.00538 0.96158 0.98286 1.20852 0.92679 0.96919 0.96959 1.20435 1.02953 1.01588 0.97538 1.19942 0.88628 0.94614 0.90699 1.83935 1.44831 1.43728 1.41664 1.21843 1.12395 1.02074 1.12475 0.88297 1.26607 0.94549 1.00278 1.00803 1.70194 1.17161 1.28437 1.40257 0.84521 0.78783 0.76615 0.76215 1.17557 1.19066 1.19444 1.21212 1.00873 0.99573 1.04626 1.20911 0.95034 0.98354 0.93454 0.93749 0.92339 0.93056 0.91346 0.88754 0.90487 0.90856 0.70880 0.86150 0.89613 0.85293 0.85667 0.83615 0.87149 0.91875 0.86690 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 7.62 71.98 0.55 -2.31 16 2 C 0.14 2.13 3.51 45.12 0.16 2.29 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.12 -1.28 5.40 30.82 0.17 -1.12 16 5 C -0.10 -0.96 4.46 30.62 0.14 -0.82 16 6 C -0.09 -0.78 2.78 -11.47 -0.03 -0.81 16 7 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 8 C 0.50 5.04 7.63 71.23 0.54 5.59 16 9 O -0.55 -9.37 16.74 21.95 0.37 -9.00 16 10 O -0.51 -2.85 13.35 -51.46 -0.69 -3.54 16 11 C 0.12 1.00 5.56 86.36 0.48 1.48 16 12 N -0.61 -9.36 2.97 -794.20 -2.36 -11.71 16 13 C 0.51 11.54 7.50 87.65 0.66 12.19 16 14 O -0.56 -18.28 11.60 -3.05 -0.04 -18.31 16 15 C -0.08 -1.54 4.18 29.10 0.12 -1.41 16 16 C -0.14 -4.33 4.38 -19.83 -0.09 -4.42 16 17 C -0.06 -1.92 9.69 22.25 0.22 -1.71 16 18 C -0.21 -9.17 9.99 22.39 0.22 -8.95 16 19 C 0.11 5.80 6.65 22.58 0.15 5.95 16 20 O -0.23 -14.68 9.76 -22.68 -0.22 -14.90 16 21 C -0.41 -24.84 9.49 67.92 0.64 -24.19 16 22 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 23 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 24 N -0.92 -58.05 13.67 21.61 0.30 -57.76 16 25 Si 1.02 44.16 29.55 68.60 2.03 46.19 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 C -0.24 -11.12 9.17 22.39 0.21 -10.91 16 30 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 31 H 0.04 1.16 6.95 -2.39 -0.02 1.14 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.44 6.55 -2.39 -0.02 1.42 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 37 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 38 H 0.43 -0.65 9.10 -74.06 -0.67 -1.33 16 39 H 0.12 0.65 5.93 -2.38 -0.01 0.63 16 40 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.13 1.59 7.87 -2.39 -0.02 1.57 16 42 H 0.13 1.61 7.65 -2.39 -0.02 1.59 16 43 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 44 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.12 5.36 5.64 -2.91 -0.02 5.35 16 47 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -85.91 384.55 4.54 -81.37 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.34 Total: 19.74 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 4.81 Total: -32.07 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -2.06 Total: -69.47 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.58 Total: -45.76 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -85.91 4.54 -81.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603380269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.641 kcal (2) G-P(sol) polarization free energy of solvation -85.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds