Wall clock time and date at job start Wed Apr 1 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.44757 * 2 1 4 4 C 1.53042 * 109.45985 * 240.03257 * 2 1 3 5 5 C 1.53188 * 109.33690 * 178.63054 * 4 2 1 6 6 N 1.46924 * 108.77720 * 54.62129 * 5 4 2 7 7 C 1.34775 * 120.63372 * 126.36878 * 6 5 4 8 8 O 1.21284 * 120.00168 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 6 5 10 10 C 1.50706 * 109.47160 * 180.02562 * 9 7 6 11 11 C 1.38327 * 119.96247 * 90.00436 * 10 9 7 12 12 C 1.38275 * 120.13673 * 180.02562 * 11 10 9 13 13 C 1.38123 * 120.06731 * 0.02562 * 12 11 10 14 14 C 1.38855 * 119.93503 * 359.97438 * 13 12 11 15 15 O 1.35746 * 120.07066 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00068 * 354.46750 * 15 14 13 17 17 H 1.07999 * 120.00288 * 5.05351 * 16 15 14 18 18 C 1.38667 * 119.99884 * 185.05506 * 16 15 14 19 19 N 1.31552 * 119.99512 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99974 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47493 * 89.99671 * 20 18 16 22 22 H 1.48501 * 109.46819 * 210.00267 * 20 18 16 23 23 H 1.48504 * 109.46992 * 329.99316 * 20 18 16 24 24 C 1.38074 * 119.96390 * 269.73367 * 10 9 7 25 25 C 1.46927 * 118.73711 * 306.39102 * 6 5 4 26 26 C 1.53036 * 109.48282 * 119.94516 * 2 1 3 27 27 H 1.09008 * 109.49538 * 61.39031 * 26 2 1 28 28 C 1.50696 * 109.50244 * 301.32463 * 26 2 1 29 29 O 1.20823 * 119.99825 * 0.12664 * 28 26 2 30 30 O 1.34228 * 120.00105 * 180.13501 * 28 26 2 31 31 H 1.09000 * 109.46702 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46796 * 299.96718 * 1 2 3 33 33 H 1.09003 * 109.46923 * 59.96537 * 1 2 3 34 34 H 1.09003 * 109.49424 * 58.66390 * 4 2 1 35 35 H 1.09001 * 109.49620 * 298.60247 * 4 2 1 36 36 H 1.09002 * 109.58556 * 174.40614 * 5 4 2 37 37 H 1.09001 * 109.58673 * 294.83288 * 5 4 2 38 38 H 1.08994 * 109.47411 * 300.00742 * 9 7 6 39 39 H 1.09002 * 109.46665 * 60.00421 * 9 7 6 40 40 H 1.07999 * 119.92919 * 0.02562 * 11 10 9 41 41 H 1.07999 * 119.96480 * 180.02562 * 12 11 10 42 42 H 1.08005 * 120.03241 * 179.97438 * 13 12 11 43 43 H 0.97001 * 119.99594 * 179.97438 * 19 18 16 44 44 H 1.07995 * 120.03768 * 359.97438 * 24 10 9 45 45 H 1.08999 * 109.58760 * 173.39449 * 25 6 5 46 46 H 1.08998 * 109.58701 * 293.81890 * 25 6 5 47 47 H 0.96699 * 116.99875 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7208 -1.2501 5 6 3.5714 -0.6893 -1.2646 6 7 4.0680 -1.2495 -0.0004 7 6 4.9611 -2.2589 -0.0004 8 8 5.3630 -2.7130 1.0500 9 6 5.4595 -2.8240 -1.3055 10 6 6.4410 -3.9339 -1.0301 11 6 5.9932 -5.2365 -0.9031 12 6 6.8906 -6.2576 -0.6499 13 6 8.2375 -5.9794 -0.5225 14 6 8.6902 -4.6729 -0.6495 15 8 10.0133 -4.3963 -0.5243 16 6 10.8201 -5.4146 -0.1638 17 1 10.4197 -6.4130 -0.0683 18 6 12.1640 -5.1799 0.0843 19 7 12.9511 -6.1734 0.4365 20 14 12.8565 -3.4528 -0.0802 21 1 12.7484 -2.7498 1.2233 22 1 14.2832 -3.5281 -0.4854 23 1 12.0884 -2.7076 -1.1098 24 6 7.7870 -3.6503 -0.9104 25 6 3.5721 -0.6888 1.2639 26 6 2.0405 -0.7202 1.2501 27 1 1.6980 -1.7550 1.2392 28 6 1.5121 -0.0284 2.4803 29 8 0.7982 0.9400 2.3690 30 8 1.8346 -0.4880 3.6995 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5144 -0.8897 34 1 1.6573 -0.2207 -2.1398 35 1 1.6973 -1.7555 -1.2386 36 1 3.9413 -1.2856 -2.0987 37 1 3.9148 0.3401 -1.3680 38 1 4.6181 -3.2168 -1.8762 39 1 5.9511 -2.0374 -1.8778 40 1 4.9405 -5.4564 -1.0019 41 1 6.5380 -7.2736 -0.5516 42 1 8.9379 -6.7773 -0.3244 43 1 13.8913 -6.0093 0.6097 44 1 8.1366 -2.6338 -1.0145 45 1 3.9423 -1.2847 2.0981 46 1 3.9155 0.3406 1.3667 47 1 1.4720 -0.0111 4.4585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603417476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:45 Heat of formation + Delta-G solvation = -153.126253 kcal Electronic energy + Delta-G solvation = -30201.348279 eV Core-core repulsion = 25927.735601 eV Total energy + Delta-G solvation = -4273.612678 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97654 -41.15128 -40.57051 -38.81749 -38.10846 -37.18026 -34.92337 -34.47452 -33.63161 -32.51014 -31.06345 -29.56794 -28.45454 -27.19407 -25.65894 -24.38932 -23.32494 -23.07223 -22.48336 -21.10502 -20.15329 -19.59824 -19.09615 -18.78688 -18.27059 -17.44653 -17.24464 -16.88361 -16.75959 -16.42742 -16.09845 -15.73517 -15.63555 -15.44369 -15.10010 -14.96902 -14.53685 -14.50707 -14.40304 -14.25475 -14.06859 -13.97925 -13.68775 -13.13304 -13.02367 -12.90559 -12.74814 -12.53551 -12.50847 -12.45815 -12.38178 -12.32019 -11.94993 -11.91679 -11.87626 -11.49771 -11.30438 -11.20766 -10.92741 -10.79379 -9.71365 -9.64566 -9.04532 -8.49855 -6.22371 0.49898 0.72067 1.06515 1.29670 1.34943 1.50797 1.65673 1.85874 2.20965 2.27960 2.78071 3.02417 3.17410 3.45354 3.60533 3.75098 3.79327 3.96351 4.01214 4.09372 4.13802 4.31002 4.39616 4.42709 4.45637 4.53462 4.57487 4.63388 4.68019 4.71583 4.72267 4.75784 4.85989 4.95437 5.01963 5.09958 5.16112 5.26893 5.33970 5.40564 5.43720 5.50575 5.66631 5.69847 5.74491 5.78066 5.92687 6.25264 6.38660 6.84561 6.94686 7.20644 7.59916 8.62043 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.002219 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.693497 B =12613.634608 C =13066.140522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.073 4.073 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.094 3.906 6 N -0.609 5.609 7 C 0.516 3.484 8 O -0.576 6.576 9 C -0.088 4.088 10 C -0.028 4.028 11 C -0.169 4.169 12 C -0.078 4.078 13 C -0.242 4.242 14 C 0.118 3.882 15 O -0.247 6.247 16 C -0.399 4.399 17 H 0.079 0.921 18 C 0.008 3.992 19 N -0.924 5.924 20 Si 0.971 3.029 21 H -0.270 1.270 22 H -0.264 1.264 23 H -0.261 1.261 24 C -0.181 4.181 25 C 0.124 3.876 26 C -0.085 4.085 27 H 0.115 0.885 28 C 0.490 3.510 29 O -0.529 6.529 30 O -0.517 6.517 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.139 0.861 42 H 0.106 0.894 43 H 0.284 0.716 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.889 15.048 -4.957 32.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.091 4.091 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.027 4.027 6 N -0.343 5.343 7 C 0.306 3.694 8 O -0.455 6.455 9 C -0.127 4.127 10 C -0.029 4.029 11 C -0.188 4.188 12 C -0.096 4.096 13 C -0.261 4.261 14 C 0.069 3.931 15 O -0.155 6.155 16 C -0.475 4.475 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.195 1.195 22 H -0.189 1.189 23 H -0.185 1.185 24 C -0.200 4.200 25 C 0.000 4.000 26 C -0.105 4.105 27 H 0.133 0.867 28 C 0.333 3.667 29 O -0.419 6.419 30 O -0.330 6.330 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.164 0.836 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -28.378 14.998 -4.745 32.446 hybrid contribution 0.698 0.206 1.231 1.430 sum -27.680 15.204 -3.514 31.776 Atomic orbital electron populations 1.22061 0.94137 1.02096 1.03289 1.21030 0.96690 0.99463 0.91962 0.90401 1.22016 0.94207 1.02061 0.97800 1.22218 0.94796 1.00928 0.84792 1.48137 1.43212 1.35081 1.07877 1.21035 0.78090 0.78752 0.91551 1.90770 1.58403 1.60835 1.35488 1.20756 0.99675 0.97291 0.94967 1.19236 0.91689 0.94957 0.96971 1.21010 1.00086 0.91817 1.05863 1.21109 0.91402 1.00430 0.96701 1.21322 0.97814 0.96123 1.10826 1.19604 0.83643 0.94459 0.95357 1.83500 1.14790 1.37789 1.79421 1.20709 0.91024 0.88633 1.47158 0.90314 1.25296 0.95000 1.03329 0.95375 1.69732 1.06764 1.33401 1.46643 0.85213 0.77741 0.78238 0.79473 1.19484 1.18876 1.18500 1.20280 0.92538 0.97298 1.09853 1.21318 0.90892 0.99793 0.87992 1.21511 0.96416 1.02111 0.90508 0.86667 1.23409 0.76745 0.81404 0.85167 1.90660 1.36366 1.27504 1.87377 1.84568 1.71173 1.59978 1.17326 0.92601 0.92179 0.91143 0.87324 0.90552 0.86557 0.89623 0.83629 0.85344 0.83324 0.84276 0.87646 0.90595 0.86010 0.90149 0.90471 0.71031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.86 71.99 0.64 -1.03 16 2 C -0.07 -0.71 1.87 -10.76 -0.02 -0.73 16 3 H 0.08 0.86 8.13 -2.39 -0.02 0.84 16 4 C -0.12 -0.65 5.36 30.67 0.16 -0.48 16 5 C 0.09 0.65 6.34 86.36 0.55 1.20 16 6 N -0.61 -9.67 2.97 -818.91 -2.43 -12.11 16 7 C 0.52 12.19 7.69 87.66 0.67 12.86 16 8 O -0.58 -20.54 15.45 -3.04 -0.05 -20.59 16 9 C -0.09 -1.65 4.18 29.10 0.12 -1.53 16 10 C -0.03 -0.87 4.37 -19.88 -0.09 -0.95 16 11 C -0.17 -5.18 9.70 22.30 0.22 -4.96 16 12 C -0.08 -2.84 10.04 22.25 0.22 -2.61 16 13 C -0.24 -11.23 9.17 22.39 0.21 -11.02 16 14 C 0.12 5.83 6.65 22.58 0.15 5.98 16 15 O -0.25 -14.05 8.59 -22.66 -0.19 -14.24 16 16 C -0.40 -24.46 9.95 67.92 0.68 -23.78 16 17 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 18 C 0.01 0.48 5.49 84.84 0.47 0.94 16 19 N -0.92 -56.75 13.96 21.62 0.30 -56.45 16 20 Si 0.97 46.89 28.62 68.60 1.96 48.85 16 21 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 24 C -0.18 -7.23 9.65 22.39 0.22 -7.02 16 25 C 0.12 2.10 5.65 86.36 0.49 2.59 16 26 C -0.09 -1.14 2.33 -11.46 -0.03 -1.17 16 27 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 28 C 0.49 7.64 7.34 71.23 0.52 8.16 16 29 O -0.53 -10.35 14.33 21.97 0.31 -10.03 16 30 O -0.52 -6.93 13.35 -51.40 -0.69 -7.62 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.93 5.40 -2.39 -0.01 0.91 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.12 0.33 5.93 -2.39 -0.01 0.32 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.15 1.48 7.64 -2.39 -0.02 1.46 16 39 H 0.13 1.78 7.88 -2.39 -0.02 1.76 16 40 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 41 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16 43 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 45 H 0.08 1.86 7.00 -2.39 -0.02 1.84 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.43 2.09 9.10 -74.06 -0.67 1.41 16 Total: -1.00 -84.51 384.85 4.73 -79.78 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.34 Total: 15.97 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 5.17 Total: -23.56 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -2.13 Total: -68.56 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.61 Total: -52.48 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.96 Total: 48.85 kcal Total: -84.51 4.73 -79.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.341 kcal (2) G-P(sol) polarization free energy of solvation -84.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds