Wall clock time and date at job start Wed Apr 1 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46000 * 2 1 4 4 C 1.53041 * 109.44745 * 119.96635 * 2 1 3 5 5 C 1.53624 * 109.24349 * 58.52360 * 4 2 1 6 6 N 1.46922 * 108.54139 * 54.86133 * 5 4 2 7 7 C 1.34773 * 120.63638 * 126.37146 * 6 5 4 8 8 O 1.21281 * 120.00687 * 179.71575 * 7 6 5 9 9 C 1.50708 * 119.99796 * 359.71207 * 7 6 5 10 10 C 1.50693 * 109.47094 * 180.02562 * 9 7 6 11 11 C 1.38327 * 119.97031 * 270.25253 * 10 9 7 12 12 C 1.38274 * 120.13867 * 180.25399 * 11 10 9 13 13 C 1.38120 * 120.07060 * 359.49508 * 12 11 10 14 14 C 1.38854 * 119.93200 * 0.25417 * 13 12 11 15 15 O 1.35751 * 120.07476 * 180.02562 * 14 13 12 16 16 C 1.34834 * 116.99708 * 354.46467 * 15 14 13 17 17 H 1.08003 * 119.99800 * 5.05492 * 16 15 14 18 18 C 1.38650 * 119.99974 * 185.05630 * 16 15 14 19 19 N 1.31557 * 120.00237 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99852 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47147 * 89.99613 * 20 18 16 22 22 H 1.48498 * 109.47090 * 209.99899 * 20 18 16 23 23 H 1.48498 * 109.47306 * 329.99882 * 20 18 16 24 24 C 1.38085 * 119.96576 * 90.00084 * 10 9 7 25 25 C 1.46933 * 118.73584 * 306.08591 * 6 5 4 26 26 C 1.53048 * 109.46076 * 240.02330 * 2 1 3 27 27 H 1.08994 * 109.49532 * 181.40691 * 26 2 1 28 28 C 1.50696 * 109.49203 * 61.31312 * 26 2 1 29 29 O 1.20829 * 120.00499 * 0.15854 * 28 26 2 30 30 O 1.34231 * 119.99835 * 180.16200 * 28 26 2 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47371 * 299.97003 * 1 2 3 33 33 H 1.09001 * 109.46803 * 59.97606 * 1 2 3 34 34 H 1.09001 * 109.49940 * 178.60101 * 4 2 1 35 35 H 1.09001 * 109.50156 * 298.69340 * 4 2 1 36 36 H 1.09000 * 109.74139 * 295.11644 * 5 4 2 37 37 H 1.09007 * 109.66436 * 174.54625 * 5 4 2 38 38 H 1.08997 * 109.46646 * 60.00440 * 9 7 6 39 39 H 1.09001 * 109.46873 * 300.00471 * 9 7 6 40 40 H 1.08003 * 119.92563 * 0.02744 * 11 10 9 41 41 H 1.07998 * 119.96580 * 179.76474 * 12 11 10 42 42 H 1.08004 * 120.03662 * 180.27155 * 13 12 11 43 43 H 0.96997 * 120.00250 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.03070 * 0.02649 * 24 10 9 45 45 H 1.09005 * 109.58488 * 173.65289 * 25 6 5 46 46 H 1.09000 * 109.58761 * 293.93706 * 25 6 5 47 47 H 0.96698 * 117.00020 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4940 -2.1569 1.2644 6 7 1.8620 -2.8090 0.0003 7 6 2.5148 -3.9880 0.0004 8 8 2.8085 -4.5188 -1.0499 9 6 2.8799 -4.6471 1.3056 10 6 3.5981 -5.9430 1.0304 11 6 2.8788 -7.1172 0.8989 12 6 3.5346 -8.3091 0.6515 13 6 4.9098 -8.3289 0.5246 14 6 5.6343 -7.1512 0.6509 15 8 6.9860 -7.1672 0.5261 16 6 7.5742 -8.3733 0.3945 17 1 6.9682 -9.2633 0.3096 18 6 8.9570 -8.4711 0.3681 19 7 9.6952 -7.3870 0.4710 20 14 9.7719 -10.1421 0.1865 21 1 9.9714 -10.4416 -1.2543 22 1 11.0870 -10.1291 0.8761 23 1 8.9052 -11.1841 0.7933 24 6 4.9731 -5.9563 0.9045 25 6 1.4993 -2.1543 -1.2641 26 6 2.0399 -0.7210 -1.2500 27 1 3.1295 -0.7432 -1.2381 28 6 1.5645 0.0081 -2.4802 29 8 0.8896 1.0042 -2.3692 30 8 1.8907 -0.4491 -3.6993 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8903 33 1 -0.3633 0.5142 -0.8898 34 1 3.1292 -0.7431 1.2386 35 1 1.6955 -0.1934 2.1399 36 1 0.4087 -2.1374 1.3632 37 1 1.9292 -2.7064 2.0992 38 1 1.9738 -4.8477 1.8772 39 1 3.5310 -3.9855 1.8770 40 1 1.8030 -7.1035 0.9933 41 1 2.9706 -9.2248 0.5532 42 1 5.4211 -9.2595 0.3270 43 1 10.6626 -7.4554 0.4529 44 1 5.5339 -5.0386 1.0036 45 1 1.9379 -2.7021 -2.0982 46 1 0.4144 -2.1369 -1.3685 47 1 1.5623 0.0519 -4.4584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603417477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:48 Heat of formation + Delta-G solvation = -128.395333 kcal Electronic energy + Delta-G solvation = -30334.993844 eV Core-core repulsion = 26062.453579 eV Total energy + Delta-G solvation = -4272.540265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.32039 -40.04404 -38.93277 -37.91604 -36.51605 -36.31941 -33.88664 -32.51887 -32.18258 -31.55409 -29.18191 -28.28605 -27.36611 -25.34295 -24.87799 -24.65858 -22.32877 -21.64142 -21.09123 -19.92772 -18.59636 -18.35484 -17.58676 -17.48544 -16.92666 -16.74023 -16.37558 -15.62935 -15.52786 -15.08960 -14.93712 -14.77986 -14.47324 -14.34428 -13.81009 -13.75775 -13.64366 -13.38290 -13.27465 -12.94762 -12.56848 -12.44785 -12.35107 -12.05133 -11.98802 -11.83025 -11.69463 -11.51491 -11.32572 -11.23327 -11.18389 -10.94790 -10.78697 -10.72997 -10.58583 -10.57164 -10.40950 -9.71916 -9.29008 -8.81729 -8.79172 -8.01909 -7.16819 -6.39738 -3.98663 1.78223 2.12112 2.43687 2.58180 2.71135 2.95907 3.16499 3.16622 3.21495 4.00755 4.07881 4.31066 4.40092 4.49696 4.56498 4.75306 4.83825 4.92872 4.96673 5.00778 5.08085 5.14809 5.22003 5.22893 5.33302 5.41372 5.43358 5.50251 5.51126 5.67554 5.69753 5.74027 5.78953 5.84350 5.97503 5.98725 6.21438 6.23749 6.28321 6.38577 6.70311 6.96409 7.12078 7.24711 7.30983 7.41882 7.49046 7.54233 7.87657 8.05499 8.22140 9.06179 9.77339 10.78634 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.002218 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.981634 B =12619.263040 C =13261.022318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 H 0.082 0.918 4 C -0.131 4.131 5 C 0.102 3.898 6 N -0.620 5.620 7 C 0.518 3.482 8 O -0.513 6.513 9 C -0.091 4.091 10 C -0.034 4.034 11 C -0.196 4.196 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.155 3.845 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.174 4.174 25 C 0.123 3.877 26 C -0.094 4.094 27 H 0.115 0.885 28 C 0.489 3.511 29 O -0.510 6.510 30 O -0.511 6.511 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.072 0.928 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.946 14.341 0.962 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.093 4.093 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.021 4.021 6 N -0.356 5.356 7 C 0.307 3.693 8 O -0.387 6.387 9 C -0.131 4.131 10 C -0.035 4.035 11 C -0.215 4.215 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.193 4.193 25 C 0.000 4.000 26 C -0.114 4.114 27 H 0.133 0.867 28 C 0.330 3.670 29 O -0.398 6.398 30 O -0.322 6.322 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.090 0.910 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -18.381 14.300 0.755 23.301 hybrid contribution 0.205 -0.381 -0.647 0.778 sum -18.177 13.919 0.109 22.894 Atomic orbital electron populations 1.22163 0.94316 1.02128 1.03491 1.20969 0.97023 0.99376 0.91958 0.89929 1.22070 1.01721 0.95343 0.97823 1.21942 1.00553 0.93369 0.86207 1.48106 1.59178 1.21917 1.06374 1.20832 0.76571 0.79864 0.92053 1.90765 1.51834 1.62566 1.33501 1.20619 1.01649 0.95888 0.94942 1.18667 0.92472 0.92595 0.99780 1.20339 0.97998 0.92586 1.10548 1.20674 0.93886 0.96902 0.97851 1.21177 0.94235 0.98878 1.10678 1.19272 0.85112 0.93149 0.92331 1.83977 1.13652 1.32229 1.78506 1.21314 0.90058 0.83426 1.51855 0.89137 1.25267 0.95255 0.99291 0.96726 1.70039 1.05766 1.27861 1.46358 0.85726 0.78758 0.80315 0.78703 1.19921 1.20305 1.19231 1.19934 0.92966 0.96511 1.09887 1.21380 0.99954 0.89939 0.88699 1.21502 1.03638 0.96233 0.89981 0.86674 1.23273 0.76323 0.82666 0.84689 1.90675 1.36162 1.25849 1.87136 1.84599 1.72759 1.58059 1.16806 0.92495 0.92269 0.90561 0.90749 0.89771 0.90803 0.88943 0.88356 0.88192 0.87977 0.87498 0.85633 0.92119 0.86879 0.87583 0.90988 0.73047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 8.13 37.16 0.30 -0.86 16 2 C -0.07 -0.54 2.35 -90.57 -0.21 -0.75 16 3 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 4 C -0.13 -0.79 5.64 -26.39 -0.15 -0.94 16 5 C 0.10 0.69 5.90 -3.49 -0.02 0.67 16 6 N -0.62 -6.36 2.97 -172.49 -0.51 -6.87 16 7 C 0.52 7.33 7.69 -10.98 -0.08 7.25 16 8 O -0.51 -9.80 15.45 5.56 0.09 -9.71 16 9 C -0.09 -1.18 4.17 -29.03 -0.12 -1.30 16 10 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 11 C -0.20 -3.52 9.70 -39.54 -0.38 -3.90 16 12 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.23 -5.21 9.17 -39.40 -0.36 -5.58 16 14 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 15 O -0.18 -5.27 9.76 0.04 0.00 -5.27 16 16 C -0.39 -11.14 9.49 30.88 0.29 -10.85 16 17 H 0.09 2.40 5.20 -52.48 -0.27 2.12 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 20 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 C -0.17 -3.79 9.64 -39.39 -0.38 -4.17 16 25 C 0.12 1.22 5.17 -3.71 -0.02 1.20 16 26 C -0.09 -0.80 2.56 -91.65 -0.23 -1.04 16 27 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 28 C 0.49 4.43 7.34 36.00 0.26 4.70 16 29 O -0.51 -5.55 14.51 -18.75 -0.27 -5.82 16 30 O -0.51 -3.99 13.35 -39.26 -0.52 -4.52 16 31 H 0.06 0.39 4.97 -51.93 -0.26 0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.68 5.64 -51.93 -0.29 0.38 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.41 6.69 -51.93 -0.35 0.07 16 37 H 0.09 0.52 5.93 -51.93 -0.31 0.22 16 38 H 0.10 0.97 7.88 -51.93 -0.41 0.56 16 39 H 0.10 1.09 7.64 -51.93 -0.40 0.69 16 40 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.11 2.39 8.06 -52.48 -0.42 1.96 16 45 H 0.11 1.30 7.01 -51.93 -0.36 0.93 16 46 H 0.07 0.63 6.70 -51.93 -0.35 0.28 16 47 H 0.41 1.42 9.10 45.56 0.41 1.83 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -36.59 379.60 -7.48 -44.07 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.39 Total: 5.44 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.32 Total: -13.90 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.25 Total: -31.86 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.71 Total: -25.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.59 -7.48 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.326 kcal (2) G-P(sol) polarization free energy of solvation -36.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds