Wall clock time and date at job start Wed Apr 1 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46000 * 2 1 4 4 C 1.53041 * 109.44745 * 119.96635 * 2 1 3 5 5 C 1.53624 * 109.24349 * 58.52360 * 4 2 1 6 6 N 1.46922 * 108.54139 * 54.86133 * 5 4 2 7 7 C 1.34773 * 120.63638 * 126.37146 * 6 5 4 8 8 O 1.21281 * 120.00687 * 179.71575 * 7 6 5 9 9 C 1.50708 * 119.99796 * 359.71207 * 7 6 5 10 10 C 1.50693 * 109.47094 * 180.02562 * 9 7 6 11 11 C 1.38327 * 119.97031 * 270.25253 * 10 9 7 12 12 C 1.38274 * 120.13867 * 180.25399 * 11 10 9 13 13 C 1.38120 * 120.07060 * 359.49508 * 12 11 10 14 14 C 1.38854 * 119.93200 * 0.25417 * 13 12 11 15 15 O 1.35751 * 120.07476 * 180.02562 * 14 13 12 16 16 C 1.34834 * 116.99708 * 354.46467 * 15 14 13 17 17 H 1.08003 * 119.99800 * 5.05492 * 16 15 14 18 18 C 1.38650 * 119.99974 * 185.05630 * 16 15 14 19 19 N 1.31557 * 120.00237 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99852 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47147 * 89.99613 * 20 18 16 22 22 H 1.48498 * 109.47090 * 209.99899 * 20 18 16 23 23 H 1.48498 * 109.47306 * 329.99882 * 20 18 16 24 24 C 1.38085 * 119.96576 * 90.00084 * 10 9 7 25 25 C 1.46933 * 118.73584 * 306.08591 * 6 5 4 26 26 C 1.53048 * 109.46076 * 240.02330 * 2 1 3 27 27 H 1.08994 * 109.49532 * 181.40691 * 26 2 1 28 28 C 1.50696 * 109.49203 * 61.31312 * 26 2 1 29 29 O 1.20829 * 120.00499 * 0.15854 * 28 26 2 30 30 O 1.34231 * 119.99835 * 180.16200 * 28 26 2 31 31 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47371 * 299.97003 * 1 2 3 33 33 H 1.09001 * 109.46803 * 59.97606 * 1 2 3 34 34 H 1.09001 * 109.49940 * 178.60101 * 4 2 1 35 35 H 1.09001 * 109.50156 * 298.69340 * 4 2 1 36 36 H 1.09000 * 109.74139 * 295.11644 * 5 4 2 37 37 H 1.09007 * 109.66436 * 174.54625 * 5 4 2 38 38 H 1.08997 * 109.46646 * 60.00440 * 9 7 6 39 39 H 1.09001 * 109.46873 * 300.00471 * 9 7 6 40 40 H 1.08003 * 119.92563 * 0.02744 * 11 10 9 41 41 H 1.07998 * 119.96580 * 179.76474 * 12 11 10 42 42 H 1.08004 * 120.03662 * 180.27155 * 13 12 11 43 43 H 0.96997 * 120.00250 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.03070 * 0.02649 * 24 10 9 45 45 H 1.09005 * 109.58488 * 173.65289 * 25 6 5 46 46 H 1.09000 * 109.58761 * 293.93706 * 25 6 5 47 47 H 0.96698 * 117.00020 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4940 -2.1569 1.2644 6 7 1.8620 -2.8090 0.0003 7 6 2.5148 -3.9880 0.0004 8 8 2.8085 -4.5188 -1.0499 9 6 2.8799 -4.6471 1.3056 10 6 3.5981 -5.9430 1.0304 11 6 2.8788 -7.1172 0.8989 12 6 3.5346 -8.3091 0.6515 13 6 4.9098 -8.3289 0.5246 14 6 5.6343 -7.1512 0.6509 15 8 6.9860 -7.1672 0.5261 16 6 7.5742 -8.3733 0.3945 17 1 6.9682 -9.2633 0.3096 18 6 8.9570 -8.4711 0.3681 19 7 9.6952 -7.3870 0.4710 20 14 9.7719 -10.1421 0.1865 21 1 9.9714 -10.4416 -1.2543 22 1 11.0870 -10.1291 0.8761 23 1 8.9052 -11.1841 0.7933 24 6 4.9731 -5.9563 0.9045 25 6 1.4993 -2.1543 -1.2641 26 6 2.0399 -0.7210 -1.2500 27 1 3.1295 -0.7432 -1.2381 28 6 1.5645 0.0081 -2.4802 29 8 0.8896 1.0042 -2.3692 30 8 1.8907 -0.4491 -3.6993 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8903 33 1 -0.3633 0.5142 -0.8898 34 1 3.1292 -0.7431 1.2386 35 1 1.6955 -0.1934 2.1399 36 1 0.4087 -2.1374 1.3632 37 1 1.9292 -2.7064 2.0992 38 1 1.9738 -4.8477 1.8772 39 1 3.5310 -3.9855 1.8770 40 1 1.8030 -7.1035 0.9933 41 1 2.9706 -9.2248 0.5532 42 1 5.4211 -9.2595 0.3270 43 1 10.6626 -7.4554 0.4529 44 1 5.5339 -5.0386 1.0036 45 1 1.9379 -2.7021 -2.0982 46 1 0.4144 -2.1369 -1.3685 47 1 1.5623 0.0519 -4.4584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603417477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:47 Heat of formation + Delta-G solvation = -153.549704 kcal Electronic energy + Delta-G solvation = -30336.084620 eV Core-core repulsion = 26062.453579 eV Total energy + Delta-G solvation = -4273.631040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07831 -41.10509 -40.49880 -38.91842 -38.04936 -37.17410 -34.76269 -34.32090 -33.51265 -32.50084 -30.86179 -29.04383 -28.54871 -27.28780 -25.71935 -25.44879 -23.25843 -23.00216 -22.64712 -20.93325 -19.56413 -19.27809 -19.06863 -18.67193 -18.33713 -17.48540 -17.24649 -16.78228 -16.65950 -16.44165 -16.07862 -16.00164 -15.72500 -15.47936 -15.36236 -14.98860 -14.57558 -14.46116 -14.39947 -14.21331 -13.98743 -13.58483 -13.55649 -13.06646 -12.95769 -12.81542 -12.64985 -12.61057 -12.44266 -12.41134 -12.33674 -12.20351 -12.09629 -11.92573 -11.81574 -11.58083 -11.28215 -11.17758 -10.87229 -10.76822 -9.65838 -9.60812 -8.95482 -8.45967 -6.14319 0.53682 0.78301 1.05164 1.34546 1.44226 1.52410 1.64369 1.85829 2.18276 2.19981 2.84877 3.17691 3.43581 3.45590 3.64045 3.75724 3.80856 3.97847 3.99791 4.12184 4.13596 4.33809 4.37119 4.41380 4.43854 4.45858 4.59641 4.61785 4.67541 4.70826 4.75268 4.76218 4.80991 4.98899 5.09569 5.11649 5.14648 5.21689 5.28995 5.33180 5.42838 5.50139 5.66784 5.67494 5.75049 5.77773 6.04342 6.24128 6.38106 6.93453 6.98782 7.19860 7.80770 8.77678 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.002218 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.981634 B =12619.263040 C =13261.022318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.072 4.072 3 H 0.079 0.921 4 C -0.127 4.127 5 C 0.093 3.907 6 N -0.608 5.608 7 C 0.517 3.483 8 O -0.576 6.576 9 C -0.089 4.089 10 C -0.026 4.026 11 C -0.179 4.179 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.111 3.889 15 O -0.235 6.235 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.252 1.252 24 C -0.191 4.191 25 C 0.125 3.875 26 C -0.092 4.092 27 H 0.108 0.892 28 C 0.492 3.508 29 O -0.529 6.529 30 O -0.517 6.517 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.145 0.855 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.272 0.728 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.301 14.272 2.587 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.091 4.091 3 H 0.097 0.903 4 C -0.165 4.165 5 C -0.028 4.028 6 N -0.342 5.342 7 C 0.306 3.694 8 O -0.455 6.455 9 C -0.128 4.128 10 C -0.027 4.027 11 C -0.198 4.198 12 C -0.092 4.092 13 C -0.267 4.267 14 C 0.061 3.939 15 O -0.142 6.142 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.176 1.176 24 C -0.210 4.210 25 C 0.002 3.998 26 C -0.112 4.112 27 H 0.126 0.874 28 C 0.335 3.665 29 O -0.418 6.418 30 O -0.330 6.330 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.163 0.837 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.162 0.838 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -21.822 14.282 2.399 26.190 hybrid contribution 0.891 -0.179 -1.166 1.478 sum -20.931 14.103 1.233 25.269 Atomic orbital electron populations 1.22101 0.93845 1.02336 1.03269 1.20987 0.97303 0.99138 0.91672 0.90282 1.22073 1.01305 0.95026 0.98076 1.22332 1.02183 0.93515 0.84730 1.48117 1.57435 1.20721 1.07908 1.21002 0.76269 0.80633 0.91473 1.90757 1.54675 1.64595 1.35457 1.20745 1.03478 0.93480 0.95050 1.19208 0.91033 0.95502 0.96910 1.20972 1.00221 0.91660 1.06914 1.21125 0.92460 0.99279 0.96371 1.21295 0.95983 0.97749 1.11648 1.19883 0.84257 0.95396 0.94325 1.83935 1.15950 1.32832 1.81455 1.21816 0.90925 0.83918 1.52285 0.88292 1.26595 0.95518 1.03964 0.96043 1.70187 1.06158 1.30743 1.49004 0.84587 0.77703 0.74803 0.79094 1.18999 1.19364 1.17584 1.20216 0.94900 0.95317 1.10604 1.21333 1.00555 0.90082 0.87819 1.21505 1.03191 0.95646 0.90821 0.87439 1.23327 0.75818 0.82298 0.85088 1.90672 1.37041 1.26645 1.87464 1.84575 1.72692 1.58463 1.17318 0.91965 0.90759 0.92538 0.91471 0.87157 0.88543 0.87005 0.83682 0.85883 0.83486 0.83797 0.86575 0.91874 0.87571 0.90464 0.89498 0.70992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.13 71.98 0.59 -1.22 16 2 C -0.07 -0.88 2.35 -10.76 -0.03 -0.91 16 3 H 0.08 1.06 8.07 -2.39 -0.02 1.04 16 4 C -0.13 -1.09 5.64 30.82 0.17 -0.92 16 5 C 0.09 0.85 5.90 86.51 0.51 1.36 16 6 N -0.61 -10.89 2.97 -818.04 -2.43 -13.31 16 7 C 0.52 13.51 7.69 87.66 0.67 14.18 16 8 O -0.58 -21.89 15.45 -3.03 -0.05 -21.94 16 9 C -0.09 -1.95 4.17 29.10 0.12 -1.82 16 10 C -0.03 -0.89 4.37 -19.88 -0.09 -0.97 16 11 C -0.18 -5.79 9.70 22.30 0.22 -5.58 16 12 C -0.07 -2.70 10.04 22.25 0.22 -2.48 16 13 C -0.25 -11.43 9.17 22.39 0.21 -11.23 16 14 C 0.11 5.85 6.65 22.58 0.15 6.00 16 15 O -0.23 -14.76 9.76 -22.79 -0.22 -14.98 16 16 C -0.41 -24.99 9.49 67.92 0.64 -24.34 16 17 H 0.10 5.52 5.20 -2.91 -0.02 5.51 16 18 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 19 N -0.92 -58.05 13.67 21.61 0.30 -57.76 16 20 Si 1.02 44.07 29.55 68.60 2.03 46.10 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 24 C -0.19 -8.54 9.64 22.39 0.22 -8.32 16 25 C 0.13 2.33 5.17 86.36 0.45 2.78 16 26 C -0.09 -1.49 2.56 -11.46 -0.03 -1.52 16 27 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 28 C 0.49 8.70 7.34 71.23 0.52 9.23 16 29 O -0.53 -11.18 14.51 21.95 0.32 -10.86 16 30 O -0.52 -7.99 13.35 -51.43 -0.69 -8.68 16 31 H 0.06 0.63 4.97 -2.39 -0.01 0.62 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.91 5.64 -2.39 -0.01 0.89 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.10 0.55 6.69 -2.39 -0.02 0.53 16 37 H 0.11 0.64 5.93 -2.38 -0.01 0.62 16 38 H 0.15 1.89 7.88 -2.39 -0.02 1.87 16 39 H 0.12 2.20 7.64 -2.39 -0.02 2.18 16 40 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 41 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 42 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.08 1.93 7.01 -2.38 -0.02 1.91 16 46 H 0.09 1.36 6.70 -2.39 -0.02 1.35 16 47 H 0.43 2.77 9.10 -74.06 -0.67 2.09 16 Total: -1.00 -87.96 379.60 4.63 -83.33 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.35 Total: 24.80 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 5.01 Total: -26.71 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -2.13 Total: -71.07 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -0.64 Total: -56.45 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -87.96 4.63 -83.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603417477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.219 kcal (2) G-P(sol) polarization free energy of solvation -87.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds