Wall clock time and date at job start Wed Apr 1 2020 04:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99863 * 2 1 4 4 C 1.38759 * 120.05823 * 0.24953 * 3 2 1 5 5 C 1.38122 * 119.94395 * 180.32312 * 4 3 2 6 6 C 1.38284 * 120.05628 * 359.67846 * 5 4 3 7 7 C 1.38244 * 120.11437 * 0.02750 * 6 5 4 8 8 C 1.38173 * 120.05355 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.02722 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.46863 * 265.00122 * 9 8 7 11 11 C 1.50704 * 120.00160 * 274.99538 * 10 9 8 12 12 C 1.33129 * 120.00077 * 95.00157 * 10 9 8 13 13 C 1.46954 * 120.00007 * 186.44537 * 12 10 9 14 14 O 1.21658 * 119.99838 * 6.38775 * 13 12 10 15 15 N 1.34773 * 119.99837 * 186.38992 * 13 12 10 16 16 C 1.36817 * 120.00237 * 359.97438 * 15 13 12 17 17 H 1.08002 * 120.00503 * 321.84478 * 16 15 13 18 18 C 1.39071 * 120.00166 * 141.83472 * 16 15 13 19 19 N 1.31347 * 119.99838 * 339.69559 * 18 16 15 20 20 Si 1.86801 * 120.00030 * 159.69076 * 18 16 15 21 21 H 1.48500 * 109.47479 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46917 * 120.00385 * 20 18 16 23 23 H 1.48508 * 109.47176 * 240.00143 * 20 18 16 24 24 C 1.46497 * 120.00012 * 180.02562 * 15 13 12 25 25 C 1.53005 * 109.47289 * 90.63175 * 24 15 13 26 26 C 1.50695 * 109.47292 * 180.02562 * 25 24 15 27 27 O 1.20835 * 119.99905 * 0.02562 * 26 25 24 28 28 O 1.34229 * 120.00110 * 179.97438 * 26 25 24 29 29 H 1.09007 * 109.46544 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47070 * 299.99801 * 1 2 3 31 31 H 1.08990 * 109.47059 * 60.00194 * 1 2 3 32 32 H 1.08003 * 120.02328 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.96985 * 179.70316 * 5 4 3 34 34 H 1.08004 * 119.93865 * 180.02562 * 6 5 4 35 35 H 1.07995 * 119.97440 * 180.02562 * 7 6 5 36 36 H 1.09007 * 109.46655 * 25.00021 * 9 8 7 37 37 H 1.08997 * 109.46944 * 144.99639 * 9 8 7 38 38 H 1.09000 * 109.46273 * 95.02331 * 11 10 9 39 39 H 1.09000 * 109.47303 * 215.02147 * 11 10 9 40 40 H 1.08994 * 109.46822 * 335.02957 * 11 10 9 41 41 H 1.08006 * 119.99724 * 6.44688 * 12 10 9 42 42 H 0.97006 * 119.99957 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47258 * 210.63138 * 24 15 13 44 44 H 1.09002 * 109.46861 * 330.63019 * 24 15 13 45 45 H 1.09002 * 109.46941 * 300.00157 * 25 24 15 46 46 H 1.08999 * 109.46793 * 60.00078 * 25 24 15 47 47 H 0.96706 * 116.99590 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0068 7 6 4.0560 2.5172 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2538 0.0222 0.0002 10 6 4.4190 -0.4701 -1.4145 11 6 3.3555 -1.3351 -2.0404 12 6 5.5046 -0.1409 -2.1113 13 6 5.6020 -0.5000 -3.5329 14 8 4.6468 -0.9931 -4.1026 15 7 6.7495 -0.2829 -4.2056 16 6 7.8235 0.2721 -3.5651 17 1 7.6724 1.0541 -2.8357 18 6 9.1100 -0.1708 -3.8531 19 7 9.2906 -1.3474 -4.4083 20 14 10.5811 0.9076 -3.4503 21 1 10.1122 2.1747 -2.8340 22 1 11.4717 0.1950 -2.4993 23 1 11.3292 1.2102 -4.6971 24 6 6.8465 -0.6403 -5.6230 25 6 6.4330 0.5575 -6.4805 26 6 6.5321 0.1897 -7.9385 27 8 6.8958 -0.9172 -8.2590 28 8 6.2155 1.0912 -8.8812 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2128 2.3203 0.0097 33 1 1.3339 4.5114 -0.0023 34 1 3.7920 4.6382 -0.0117 35 1 5.1343 2.5753 -0.0096 36 1 5.2341 0.2275 0.4304 37 1 3.7490 -0.7401 0.5936 38 1 2.6707 -0.7106 -2.6142 39 1 3.8231 -2.0643 -2.7020 40 1 2.8035 -1.8556 -1.2579 41 1 6.3137 0.3900 -1.6316 42 1 10.1879 -1.6565 -4.6089 43 1 7.8739 -0.9181 -5.8583 44 1 6.1858 -1.4818 -5.8315 45 1 5.4055 0.8353 -6.2453 46 1 7.0937 1.3989 -6.2720 47 1 6.2952 0.8092 -9.8028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607340964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:15 Heat of formation + Delta-G solvation = -120.847662 kcal Electronic energy + Delta-G solvation = -30673.363312 eV Core-core repulsion = 26401.150339 eV Total energy + Delta-G solvation = -4272.212974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.24666 -39.80281 -38.66723 -37.40942 -35.92215 -35.50431 -34.51401 -31.98150 -31.37687 -30.60469 -30.06933 -27.53336 -26.97848 -26.41785 -25.19644 -23.77465 -22.08034 -21.73732 -20.65816 -19.43245 -18.41746 -17.89705 -17.62187 -16.37595 -16.25350 -16.11978 -15.86222 -15.72133 -15.59851 -15.41011 -14.56400 -14.43417 -14.15077 -13.93835 -13.71713 -13.40778 -13.32013 -12.81309 -12.68607 -12.63932 -12.50868 -12.20865 -11.96873 -11.85111 -11.64474 -11.35482 -11.32208 -11.15938 -11.13207 -11.07849 -10.99334 -10.82563 -10.74714 -10.43016 -10.36030 -10.11020 -9.96649 -9.17876 -8.83169 -8.33125 -8.23712 -8.02853 -7.49243 -6.38101 -4.09588 1.34067 1.48571 2.33921 2.69139 3.10561 3.20535 3.23366 3.29044 3.46728 3.80900 4.07508 4.42643 4.76604 4.81067 4.88400 5.00504 5.02869 5.07147 5.10781 5.33366 5.36510 5.43749 5.56123 5.61284 5.66577 5.69462 5.84184 5.93695 6.00423 6.06040 6.21078 6.30934 6.36939 6.40111 6.47803 6.49488 6.57368 6.62337 6.82038 6.83852 6.88992 6.96796 7.32092 7.32229 7.39691 7.43619 7.52037 7.91012 8.31318 8.35841 9.06011 9.51127 9.94237 10.62650 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003200 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.239259 B = 8747.185356 C = 9783.867797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.306 6.306 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.089 4.089 6 C -0.156 4.156 7 C -0.075 4.075 8 C -0.098 4.098 9 C -0.036 4.036 10 C -0.077 4.077 11 C -0.100 4.100 12 C -0.168 4.168 13 C 0.499 3.501 14 O -0.598 6.598 15 N -0.433 5.433 16 C -0.343 4.343 17 H 0.092 0.908 18 C 0.044 3.956 19 N -0.852 5.852 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.125 3.875 25 C -0.124 4.124 26 C 0.483 3.517 27 O -0.514 6.514 28 O -0.525 6.525 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.123 0.877 42 H 0.270 0.730 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.677 8.060 6.972 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.087 3.913 4 C -0.230 4.230 5 C -0.108 4.108 6 C -0.174 4.174 7 C -0.093 4.093 8 C -0.098 4.098 9 C -0.074 4.074 10 C -0.079 4.079 11 C -0.156 4.156 12 C -0.189 4.189 13 C 0.291 3.709 14 O -0.486 6.486 15 N -0.150 5.150 16 C -0.471 4.471 17 H 0.110 0.890 18 C -0.163 4.163 19 N -0.487 5.487 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.205 1.205 24 C 0.001 3.999 25 C -0.162 4.162 26 C 0.325 3.675 27 O -0.402 6.402 28 O -0.337 6.337 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.141 0.859 42 H 0.081 0.919 43 H 0.132 0.868 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.122 0.878 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.792 7.300 6.933 15.505 hybrid contribution 0.754 0.658 -0.521 1.128 sum -11.038 7.958 6.412 15.043 Atomic orbital electron populations 1.23023 0.78982 1.03790 1.00974 1.86143 1.20744 1.26584 1.88420 1.18837 0.91781 0.84230 0.96424 1.21166 0.99726 0.92470 1.09619 1.20867 0.94715 0.96760 0.98422 1.21019 0.93860 0.98367 1.04191 1.20971 1.00218 0.90972 0.97139 1.19162 0.90412 0.95631 1.04640 1.19498 0.99216 0.93943 0.94697 1.22069 0.95617 0.96163 0.94083 1.20876 0.96601 0.99013 0.99084 1.22576 0.98017 1.03399 0.94869 1.18580 0.84027 0.81084 0.87188 1.90596 1.38743 1.48703 1.70561 1.43244 1.10758 1.54174 1.06801 1.19407 0.84285 1.18418 1.25011 0.89042 1.25435 0.99255 0.94777 0.96815 1.69904 1.23176 1.15664 1.40005 0.86137 0.81365 0.80403 0.78406 1.19041 1.20638 1.20523 1.21161 1.05129 0.92955 0.80692 1.21860 1.04801 1.03851 0.85732 1.23825 0.72214 0.82117 0.89347 1.90703 1.43263 1.22952 1.83286 1.84597 1.81700 1.47162 1.20193 0.88363 0.93048 0.92788 0.85807 0.86208 0.86035 0.85148 0.90332 0.90101 0.92128 0.89632 0.93950 0.85935 0.91909 0.86843 0.91573 0.88559 0.87763 0.74191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.97 8.79 -19.43 -0.17 -4.14 16 3 C 0.13 1.81 6.66 -39.21 -0.26 1.55 16 4 C -0.21 -2.47 9.04 -39.43 -0.36 -2.83 16 5 C -0.09 -0.99 10.04 -39.61 -0.40 -1.39 16 6 C -0.16 -1.83 10.04 -39.56 -0.40 -2.23 16 7 C -0.07 -0.99 9.68 -39.60 -0.38 -1.37 16 8 C -0.10 -1.40 5.13 -104.47 -0.54 -1.94 16 9 C -0.04 -0.54 5.23 -29.04 -0.15 -0.69 16 10 C -0.08 -1.41 5.35 -101.13 -0.54 -1.95 16 11 C -0.10 -1.87 7.99 36.01 0.29 -1.58 16 12 C -0.17 -3.50 8.89 -37.83 -0.34 -3.84 16 13 C 0.50 12.14 7.44 -12.73 -0.09 12.04 16 14 O -0.60 -15.39 12.84 5.23 0.07 -15.32 16 15 N -0.43 -10.73 2.51 -116.21 -0.29 -11.02 16 16 C -0.34 -8.43 8.46 -15.02 -0.13 -8.56 16 17 H 0.09 2.13 6.73 -52.49 -0.35 1.78 16 18 C 0.04 1.09 4.98 -17.45 -0.09 1.01 16 19 N -0.85 -22.55 11.43 55.50 0.63 -21.92 16 20 Si 0.91 18.94 29.60 -169.99 -5.03 13.91 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.12 3.02 4.30 -4.04 -0.02 3.00 16 25 C -0.12 -2.48 6.14 -27.88 -0.17 -2.65 16 26 C 0.48 9.05 8.33 36.00 0.30 9.35 16 27 O -0.51 -11.17 16.74 -18.76 -0.31 -11.49 16 28 O -0.52 -7.67 13.42 -39.26 -0.53 -8.20 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 31 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 32 H 0.12 1.15 6.30 -52.48 -0.33 0.82 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 37 H 0.08 1.14 7.63 -51.93 -0.40 0.75 16 38 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.09 1.84 6.05 -51.93 -0.31 1.53 16 40 H 0.04 0.69 7.71 -51.93 -0.40 0.29 16 41 H 0.12 2.43 6.44 -52.48 -0.34 2.09 16 42 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 43 H 0.11 2.98 5.47 -51.93 -0.28 2.70 16 44 H 0.07 1.71 7.36 -51.93 -0.38 1.33 16 45 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 46 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 47 H 0.40 3.89 9.10 45.56 0.41 4.31 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -32.03 395.15 -7.64 -39.67 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -5.68 Total: 13.39 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.28 Total: -0.84 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.34 Total: -32.94 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.94 Total: -39.15 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.03 -7.64 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607340964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.175 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds