Wall clock time and date at job start Wed Apr 1 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99863 * 2 1 4 4 C 1.38759 * 120.05823 * 0.24953 * 3 2 1 5 5 C 1.38122 * 119.94395 * 180.32312 * 4 3 2 6 6 C 1.38284 * 120.05628 * 359.67846 * 5 4 3 7 7 C 1.38244 * 120.11437 * 0.02750 * 6 5 4 8 8 C 1.38173 * 120.05355 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.02722 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.46863 * 265.00122 * 9 8 7 11 11 C 1.50704 * 120.00160 * 274.99538 * 10 9 8 12 12 C 1.33129 * 120.00077 * 95.00157 * 10 9 8 13 13 C 1.46954 * 120.00007 * 186.44537 * 12 10 9 14 14 O 1.21658 * 119.99838 * 6.38775 * 13 12 10 15 15 N 1.34773 * 119.99837 * 186.38992 * 13 12 10 16 16 C 1.36817 * 120.00237 * 359.97438 * 15 13 12 17 17 H 1.08002 * 120.00503 * 321.84478 * 16 15 13 18 18 C 1.39071 * 120.00166 * 141.83472 * 16 15 13 19 19 N 1.31347 * 119.99838 * 339.69559 * 18 16 15 20 20 Si 1.86801 * 120.00030 * 159.69076 * 18 16 15 21 21 H 1.48500 * 109.47479 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46917 * 120.00385 * 20 18 16 23 23 H 1.48508 * 109.47176 * 240.00143 * 20 18 16 24 24 C 1.46497 * 120.00012 * 180.02562 * 15 13 12 25 25 C 1.53005 * 109.47289 * 90.63175 * 24 15 13 26 26 C 1.50695 * 109.47292 * 180.02562 * 25 24 15 27 27 O 1.20835 * 119.99905 * 0.02562 * 26 25 24 28 28 O 1.34229 * 120.00110 * 179.97438 * 26 25 24 29 29 H 1.09007 * 109.46544 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47070 * 299.99801 * 1 2 3 31 31 H 1.08990 * 109.47059 * 60.00194 * 1 2 3 32 32 H 1.08003 * 120.02328 * 0.02562 * 4 3 2 33 33 H 1.08003 * 119.96985 * 179.70316 * 5 4 3 34 34 H 1.08004 * 119.93865 * 180.02562 * 6 5 4 35 35 H 1.07995 * 119.97440 * 180.02562 * 7 6 5 36 36 H 1.09007 * 109.46655 * 25.00021 * 9 8 7 37 37 H 1.08997 * 109.46944 * 144.99639 * 9 8 7 38 38 H 1.09000 * 109.46273 * 95.02331 * 11 10 9 39 39 H 1.09000 * 109.47303 * 215.02147 * 11 10 9 40 40 H 1.08994 * 109.46822 * 335.02957 * 11 10 9 41 41 H 1.08006 * 119.99724 * 6.44688 * 12 10 9 42 42 H 0.97006 * 119.99957 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47258 * 210.63138 * 24 15 13 44 44 H 1.09002 * 109.46861 * 330.63019 * 24 15 13 45 45 H 1.09002 * 109.46941 * 300.00157 * 25 24 15 46 46 H 1.08999 * 109.46793 * 60.00078 * 25 24 15 47 47 H 0.96706 * 116.99590 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0068 7 6 4.0560 2.5172 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2538 0.0222 0.0002 10 6 4.4190 -0.4701 -1.4145 11 6 3.3555 -1.3351 -2.0404 12 6 5.5046 -0.1409 -2.1113 13 6 5.6020 -0.5000 -3.5329 14 8 4.6468 -0.9931 -4.1026 15 7 6.7495 -0.2829 -4.2056 16 6 7.8235 0.2721 -3.5651 17 1 7.6724 1.0541 -2.8357 18 6 9.1100 -0.1708 -3.8531 19 7 9.2906 -1.3474 -4.4083 20 14 10.5811 0.9076 -3.4503 21 1 10.1122 2.1747 -2.8340 22 1 11.4717 0.1950 -2.4993 23 1 11.3292 1.2102 -4.6971 24 6 6.8465 -0.6403 -5.6230 25 6 6.4330 0.5575 -6.4805 26 6 6.5321 0.1897 -7.9385 27 8 6.8958 -0.9172 -8.2590 28 8 6.2155 1.0912 -8.8812 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2128 2.3203 0.0097 33 1 1.3339 4.5114 -0.0023 34 1 3.7920 4.6382 -0.0117 35 1 5.1343 2.5753 -0.0096 36 1 5.2341 0.2275 0.4304 37 1 3.7490 -0.7401 0.5936 38 1 2.6707 -0.7106 -2.6142 39 1 3.8231 -2.0643 -2.7020 40 1 2.8035 -1.8556 -1.2579 41 1 6.3137 0.3900 -1.6316 42 1 10.1879 -1.6565 -4.6089 43 1 7.8739 -0.9181 -5.8583 44 1 6.1858 -1.4818 -5.8315 45 1 5.4055 0.8353 -6.2453 46 1 7.0937 1.3989 -6.2720 47 1 6.2952 0.8092 -9.8028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607340964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:14 Heat of formation + Delta-G solvation = -139.296553 kcal Electronic energy + Delta-G solvation = -30674.163316 eV Core-core repulsion = 26401.150339 eV Total energy + Delta-G solvation = -4273.012977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36514 -41.16660 -40.43386 -38.32791 -37.45671 -37.01908 -36.13193 -33.80983 -32.72663 -32.21665 -30.95956 -28.60375 -28.36597 -27.51027 -27.07267 -25.46857 -23.00129 -22.82395 -22.10675 -21.20842 -20.02236 -19.14577 -18.79000 -18.00654 -17.91401 -17.54987 -17.09677 -17.00787 -16.63609 -16.50777 -16.22292 -15.83927 -15.65555 -15.30478 -14.97250 -14.72548 -14.49220 -14.30618 -14.21377 -14.09392 -13.80056 -13.61572 -13.30869 -13.11242 -12.94552 -12.82341 -12.77656 -12.74731 -12.57945 -12.53805 -12.15697 -12.03263 -11.99749 -11.90467 -11.82512 -11.70150 -11.66304 -11.04924 -10.18027 -9.88695 -9.71568 -9.38925 -8.99686 -8.26085 -6.04158 0.36528 0.56339 0.77877 1.17021 1.46926 1.51216 1.63827 2.02328 2.34122 2.48190 2.60440 2.87156 3.15840 3.18002 3.88060 3.93376 4.00718 4.10139 4.16314 4.20649 4.25302 4.34982 4.44469 4.45651 4.49097 4.54659 4.63742 4.71151 4.75927 4.78137 4.81085 4.92947 4.94225 5.00077 5.02900 5.15955 5.30930 5.36920 5.45090 5.51404 5.55412 5.58223 5.66842 5.77709 5.89919 5.96330 6.04096 6.44019 6.55161 6.98720 7.15694 7.62800 8.05842 8.75846 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003200 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.239259 B = 8747.185356 C = 9783.867797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.119 3.881 4 C -0.216 4.216 5 C -0.088 4.088 6 C -0.163 4.163 7 C -0.087 4.087 8 C -0.125 4.125 9 C -0.030 4.030 10 C -0.048 4.048 11 C -0.091 4.091 12 C -0.199 4.199 13 C 0.486 3.514 14 O -0.624 6.624 15 N -0.445 5.445 16 C -0.351 4.351 17 H 0.104 0.896 18 C 0.001 3.999 19 N -0.894 5.894 20 Si 0.981 3.019 21 H -0.249 1.249 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.131 3.869 25 C -0.115 4.115 26 C 0.495 3.505 27 O -0.550 6.550 28 O -0.506 6.506 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.131 0.869 42 H 0.270 0.730 43 H 0.092 0.908 44 H 0.034 0.966 45 H 0.100 0.900 46 H 0.117 0.883 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.579 10.749 8.178 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.241 6.241 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.106 4.106 6 C -0.181 4.181 7 C -0.105 4.105 8 C -0.125 4.125 9 C -0.067 4.067 10 C -0.051 4.051 11 C -0.147 4.147 12 C -0.219 4.219 13 C 0.280 3.720 14 O -0.514 6.514 15 N -0.162 5.162 16 C -0.478 4.478 17 H 0.122 0.878 18 C -0.202 4.202 19 N -0.531 5.531 20 Si 0.805 3.195 21 H -0.172 1.172 22 H -0.208 1.208 23 H -0.207 1.207 24 C 0.006 3.994 25 C -0.153 4.153 26 C 0.339 3.661 27 O -0.441 6.441 28 O -0.320 6.320 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.053 0.947 45 H 0.118 0.882 46 H 0.135 0.865 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -12.715 10.021 8.123 18.113 hybrid contribution 0.840 -0.192 -0.907 1.251 sum -11.875 9.829 7.216 17.020 Atomic orbital electron populations 1.23286 0.77058 1.05203 1.01982 1.86094 1.22846 1.26691 1.88445 1.19050 0.91862 0.85120 0.96659 1.21487 1.00949 0.92095 1.08911 1.21283 0.94822 0.97708 0.96751 1.21334 0.94380 0.98781 1.03621 1.21172 1.00800 0.91247 0.97267 1.19180 0.90953 0.95429 1.06989 1.19475 1.00402 0.94797 0.92018 1.22427 0.93735 0.93346 0.95572 1.20739 0.96524 0.98340 0.99133 1.22440 0.99833 1.06334 0.93315 1.19224 0.83606 0.80581 0.88607 1.90569 1.39467 1.49904 1.71463 1.43456 1.11185 1.54442 1.07105 1.19766 0.84367 1.18447 1.25231 0.87803 1.26309 1.01828 0.95585 0.96479 1.70039 1.23696 1.17625 1.41731 0.85061 0.77492 0.79099 0.77894 1.17160 1.20837 1.20735 1.20912 1.02972 0.93844 0.81667 1.21602 1.05100 1.02171 0.86472 1.23378 0.71504 0.81775 0.89484 1.90703 1.45067 1.24500 1.83794 1.84506 1.80538 1.45445 1.21502 0.86908 0.91285 0.92430 0.83562 0.83312 0.83946 0.84677 0.89090 0.89283 0.92998 0.92788 0.91447 0.85088 0.92017 0.89043 0.94703 0.88195 0.86455 0.71161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.00 8.79 -92.42 -0.81 -8.81 16 3 C 0.12 3.04 6.66 22.51 0.15 3.19 16 4 C -0.22 -4.51 9.04 22.37 0.20 -4.31 16 5 C -0.09 -1.68 10.04 22.25 0.22 -1.46 16 6 C -0.16 -3.42 10.04 22.28 0.22 -3.19 16 7 C -0.09 -2.16 9.68 22.26 0.22 -1.94 16 8 C -0.12 -3.43 5.13 -19.77 -0.10 -3.53 16 9 C -0.03 -0.86 5.23 29.10 0.15 -0.71 16 10 C -0.05 -1.77 5.35 -17.60 -0.09 -1.87 16 11 C -0.09 -3.46 7.99 71.24 0.57 -2.89 16 12 C -0.20 -8.41 8.89 23.41 0.21 -8.21 16 13 C 0.49 24.52 7.44 86.53 0.64 25.16 16 14 O -0.62 -33.63 12.84 -4.21 -0.05 -33.69 16 15 N -0.44 -22.79 2.51 -639.80 -1.61 -24.40 16 16 C -0.35 -17.39 8.46 84.12 0.71 -16.68 16 17 H 0.10 4.79 6.73 -2.91 -0.02 4.77 16 18 C 0.00 0.06 4.98 84.97 0.42 0.48 16 19 N -0.89 -48.80 11.43 21.68 0.25 -48.55 16 20 Si 0.98 38.66 29.60 68.60 2.03 40.69 16 21 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 22 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 24 C 0.13 6.60 4.30 86.38 0.37 6.97 16 25 C -0.11 -4.66 6.14 29.85 0.18 -4.47 16 26 C 0.50 18.46 8.33 71.23 0.59 19.05 16 27 O -0.55 -24.35 16.74 21.94 0.37 -23.98 16 28 O -0.51 -13.77 13.42 -51.41 -0.69 -14.46 16 29 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.07 0.82 7.65 -2.38 -0.02 0.80 16 31 H 0.06 0.84 7.67 -2.39 -0.02 0.82 16 32 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 33 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.09 2.37 7.90 -2.38 -0.02 2.35 16 37 H 0.09 2.40 7.63 -2.39 -0.02 2.38 16 38 H 0.05 2.07 8.07 -2.39 -0.02 2.05 16 39 H 0.05 2.42 6.05 -2.39 -0.01 2.41 16 40 H 0.07 2.18 7.71 -2.39 -0.02 2.16 16 41 H 0.13 5.22 6.44 -2.91 -0.02 5.20 16 42 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 43 H 0.09 5.05 5.47 -2.39 -0.01 5.04 16 44 H 0.03 1.92 7.36 -2.39 -0.02 1.90 16 45 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.12 4.43 8.14 -2.39 -0.02 4.41 16 47 H 0.43 7.19 9.10 -74.05 -0.67 6.52 16 Total: -1.00 -72.16 395.15 5.61 -66.55 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: 0.33 Total: 39.65 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.79 Total: 7.01 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.36 Total: -72.95 kcal Atomic # 8 Polarization: -79.76 SS G_CDS: -1.19 Total: -80.95 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -72.16 5.61 -66.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607340964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.745 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds