Wall clock time and date at job start Wed Apr 1 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.90659 * 2 1 4 4 C 1.55300 * 110.84830 * 236.42056 * 2 1 3 5 5 C 1.54947 * 100.94204 * 207.67202 * 4 2 1 6 6 H 1.09002 * 110.31223 * 277.52763 * 5 4 2 7 7 C 1.50701 * 110.39651 * 155.39968 * 5 4 2 8 8 O 1.21283 * 120.00359 * 247.78781 * 7 5 4 9 9 N 1.34783 * 119.99501 * 67.78374 * 7 5 4 10 10 C 1.46502 * 119.99397 * 180.02562 * 9 7 5 11 11 H 1.09001 * 109.47245 * 324.99833 * 10 9 7 12 12 C 1.53003 * 109.46838 * 205.00121 * 10 9 7 13 13 C 1.50698 * 109.47112 * 64.99785 * 12 10 9 14 14 H 1.07997 * 120.00115 * 0.02562 * 13 12 10 15 15 C 1.37885 * 119.99838 * 179.97438 * 13 12 10 16 16 N 1.31513 * 120.00188 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99758 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47428 * 60.00318 * 17 15 13 19 19 H 1.48498 * 109.47305 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47375 * 300.00309 * 17 15 13 21 21 C 1.50692 * 109.47484 * 85.00253 * 10 9 7 22 22 C 1.38233 * 120.00003 * 39.72137 * 21 10 9 23 23 C 1.38237 * 120.00117 * 179.76686 * 22 21 10 24 24 C 1.38240 * 119.99811 * 0.51344 * 23 22 21 25 25 C 1.38234 * 119.99974 * 359.74032 * 24 23 22 26 26 C 1.38230 * 119.99940 * 0.02562 * 25 24 23 27 27 O 1.43645 * 105.13588 * 36.44541 * 5 4 2 28 28 C 1.43241 * 109.96909 * 335.57051 * 27 5 4 29 29 H 1.09002 * 109.82871 * 121.22691 * 28 27 5 30 30 C 1.50704 * 109.83108 * 242.11046 * 28 27 5 31 31 O 1.20824 * 120.00181 * 3.40964 * 30 28 27 32 32 O 1.34226 * 119.99842 * 183.41488 * 30 28 27 33 33 H 1.09000 * 109.47065 * 297.86587 * 1 2 3 34 34 H 1.09001 * 109.47468 * 57.87228 * 1 2 3 35 35 H 1.09009 * 109.46801 * 177.86828 * 1 2 3 36 36 H 1.09008 * 111.13183 * 89.75418 * 4 2 1 37 37 H 1.09000 * 111.12761 * 325.58678 * 4 2 1 38 38 H 0.96998 * 120.00335 * 0.02562 * 9 7 5 39 39 H 1.08995 * 109.47092 * 184.99848 * 12 10 9 40 40 H 1.09004 * 109.47077 * 305.00114 * 12 10 9 41 41 H 0.97001 * 119.99961 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.00234 * 0.02562 * 22 21 10 43 43 H 1.08000 * 120.00291 * 180.22586 * 23 22 21 44 44 H 1.08000 * 119.99914 * 179.72820 * 24 23 22 45 45 H 1.07999 * 119.99944 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.00127 * 179.97438 * 26 25 24 47 47 H 0.96699 * 117.00063 * 179.97438 * 32 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0183 0.0000 4 6 2.0827 -0.8027 -1.2091 5 6 3.4464 -1.2781 -0.6479 6 1 4.1936 -0.4913 -0.7521 7 6 3.9005 -2.5268 -1.3590 8 8 3.9501 -3.5811 -0.7614 9 7 4.2515 -2.4720 -2.6591 10 6 4.6924 -3.6860 -3.3505 11 1 5.2520 -4.3154 -2.6585 12 6 5.5881 -3.3040 -4.5307 13 6 6.8486 -2.6581 -4.0161 14 1 6.9964 -2.5330 -2.9537 15 6 7.8138 -2.2278 -4.9018 16 7 7.6342 -2.3806 -6.1956 17 14 9.3767 -1.4278 -4.2640 18 1 10.0975 -2.3820 -3.3836 19 1 10.2460 -1.0569 -5.4093 20 1 9.0288 -0.2079 -3.4918 21 6 3.4902 -4.4409 -3.8561 22 6 2.4189 -3.7535 -4.3952 23 6 1.3181 -4.4463 -4.8634 24 6 1.2841 -5.8259 -4.7829 25 6 2.3532 -6.5130 -4.2390 26 6 3.4560 -5.8205 -3.7753 27 8 3.2045 -1.5552 0.7407 28 6 2.0795 -0.7980 1.2018 29 1 1.3109 -1.4715 1.5810 30 6 2.5124 0.1487 2.2916 31 8 3.6782 0.2215 2.6007 32 8 1.6028 0.9108 2.9189 33 1 -0.3633 0.4803 0.9085 34 1 -0.3634 0.5465 -0.8703 35 1 -0.3633 -1.0271 -0.0382 36 1 2.2185 -0.1596 -2.0788 37 1 1.4387 -1.6496 -1.4459 38 1 4.2122 -1.6288 -3.1370 39 1 5.8438 -4.1992 -5.0974 40 1 5.0587 -2.6037 -5.1768 41 1 8.3130 -2.0776 -6.8187 42 1 2.4436 -2.6754 -4.4543 43 1 0.4826 -3.9094 -5.2879 44 1 0.4222 -6.3669 -5.1447 45 1 2.3265 -7.5908 -4.1758 46 1 4.2911 -6.3573 -3.3500 47 1 1.9282 1.5023 3.6112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607441757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:01 Heat of formation + Delta-G solvation = -155.116094 kcal Electronic energy + Delta-G solvation = -31003.033305 eV Core-core repulsion = 26729.334340 eV Total energy + Delta-G solvation = -4273.698964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.09846 -39.86761 -39.05994 -37.97649 -36.32180 -35.20830 -33.95242 -32.79089 -31.70237 -30.55195 -30.20548 -28.75078 -27.55216 -25.37434 -24.24820 -22.33064 -22.01800 -21.89077 -21.29136 -20.14267 -19.71020 -18.58599 -17.51247 -17.23549 -16.80311 -16.32794 -16.16378 -15.90605 -15.44661 -15.04961 -14.88617 -14.62900 -14.50992 -14.22904 -13.71743 -13.57063 -13.41447 -13.27460 -13.03126 -12.73470 -12.61101 -12.58178 -12.16417 -12.12033 -11.81916 -11.75566 -11.59055 -11.48828 -11.20770 -11.14973 -10.95002 -10.85332 -10.73532 -10.63655 -10.47410 -10.01545 -9.79983 -9.36285 -9.20444 -8.57827 -8.48707 -8.45109 -8.21130 -6.10498 -4.14155 1.74858 1.77591 1.92675 2.43239 2.94968 3.28949 3.29756 3.33975 3.38058 3.78933 4.01731 4.20702 4.39143 4.42016 4.50758 4.74287 4.91797 4.92034 5.02155 5.17622 5.24062 5.24428 5.26966 5.28983 5.35158 5.39013 5.50726 5.53563 5.56185 5.74917 5.86286 5.87736 5.91462 6.13632 6.20950 6.32554 6.39861 6.52355 6.55491 6.81380 6.82946 6.85328 7.08198 7.37661 7.46599 7.59434 7.65154 7.86125 8.04737 8.23995 8.68891 8.91779 9.51352 10.99850 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.007733 B = 0.003883 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.903625 B = 7208.800487 C = 9873.448185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.059 3.941 6 H 0.102 0.898 7 C 0.514 3.486 8 O -0.527 6.527 9 N -0.696 5.696 10 C 0.185 3.815 11 H 0.088 0.912 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.071 4.071 22 C -0.109 4.109 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.108 4.108 27 O -0.318 6.318 28 C 0.093 3.907 29 H 0.123 0.877 30 C 0.463 3.537 31 O -0.493 6.493 32 O -0.515 6.515 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.401 0.599 39 H 0.035 0.965 40 H 0.025 0.975 41 H 0.262 0.738 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.374 5.053 8.739 20.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.002 4.002 6 H 0.119 0.881 7 C 0.298 3.702 8 O -0.403 6.403 9 N -0.346 5.346 10 C 0.081 3.919 11 H 0.106 0.894 12 C -0.012 4.012 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.072 4.072 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.140 4.140 26 C -0.126 4.126 27 O -0.235 6.235 28 C 0.033 3.967 29 H 0.141 0.859 30 C 0.304 3.696 31 O -0.379 6.379 32 O -0.328 6.328 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.236 0.764 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -17.909 3.925 8.904 20.381 hybrid contribution 1.197 1.429 0.418 1.910 sum -16.712 5.354 9.322 19.871 Atomic orbital electron populations 1.21756 0.92142 1.02994 1.03081 1.22645 0.98224 0.99810 0.92131 0.88819 1.23396 0.94961 1.01013 0.98451 1.23013 0.98438 0.96695 0.82052 0.88081 1.20040 0.78168 0.89469 0.82533 1.90698 1.52756 1.30890 1.65933 1.45858 1.66248 1.12787 1.09746 1.20277 0.90913 0.84569 0.96104 0.89420 1.19384 0.93166 0.97744 0.90923 1.21110 1.02380 1.39450 0.93156 0.92386 1.24972 0.98333 0.95891 0.94795 1.69945 1.34986 1.46886 1.01246 0.86664 0.83213 0.79910 0.78289 1.20152 1.21303 1.20227 1.20537 0.95984 0.94057 0.96609 1.20889 0.93455 0.99673 0.98668 1.21033 0.98256 0.94382 1.00645 1.20999 0.98580 0.94468 1.01256 1.21047 0.94102 0.99427 0.99430 1.21035 0.98152 0.93904 0.99532 1.88685 1.47992 1.63132 1.23662 1.22347 0.89878 0.92186 0.92252 0.85921 1.23931 0.84010 0.79470 0.82233 1.90769 1.19671 1.64530 1.62934 1.84497 1.43504 1.53126 1.51690 0.91277 0.91359 0.91709 0.88075 0.88832 0.76449 0.94679 0.95684 0.92793 0.86570 0.86746 0.86852 0.86599 0.86158 0.73057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.14 37.16 0.34 -0.53 16 2 C -0.11 -0.90 3.11 -88.68 -0.28 -1.18 16 3 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 4 C -0.14 -1.34 6.02 -24.48 -0.15 -1.49 16 5 C 0.06 0.83 3.86 -26.86 -0.10 0.72 16 6 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 7 C 0.51 9.14 7.14 -10.98 -0.08 9.06 16 8 O -0.53 -11.56 16.21 -13.77 -0.22 -11.78 16 9 N -0.70 -12.05 4.02 -54.93 -0.22 -12.27 16 10 C 0.19 3.69 2.12 -69.08 -0.15 3.54 16 11 H 0.09 1.95 7.44 -51.93 -0.39 1.56 16 12 C 0.03 0.59 4.50 -27.88 -0.13 0.46 16 13 C -0.52 -13.70 8.84 -34.44 -0.30 -14.00 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 17 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 C -0.07 -1.27 4.91 -104.63 -0.51 -1.78 16 22 C -0.11 -1.71 9.33 -39.58 -0.37 -2.08 16 23 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 24 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 25 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 26 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 27 O -0.32 -5.02 9.82 -64.44 -0.63 -5.65 16 28 C 0.09 1.04 3.66 -27.16 -0.10 0.94 16 29 H 0.12 1.16 7.81 -51.93 -0.41 0.75 16 30 C 0.46 5.34 7.52 36.01 0.27 5.61 16 31 O -0.49 -7.82 17.28 -25.40 -0.44 -8.25 16 32 O -0.52 -3.88 13.42 -39.25 -0.53 -4.41 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.40 8.12 -51.92 -0.42 -0.03 16 36 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.09 0.92 7.94 -51.93 -0.41 0.51 16 38 H 0.40 6.15 8.60 -40.82 -0.35 5.80 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.12 1.66 7.71 -52.49 -0.40 1.25 16 43 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.12 2.00 8.04 -52.48 -0.42 1.58 16 47 H 0.41 1.47 9.10 45.56 0.41 1.88 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -35.69 401.99 -9.64 -45.32 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.14 Total: 7.43 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -3.23 Total: -7.93 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.52 Total: -36.84 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.82 Total: -30.10 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.69 -9.64 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607441757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.792 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds