Wall clock time and date at job start Wed Apr 1 2020 05:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21290 * 120.00183 * 2 1 4 4 C 1.46842 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.39613 * 120.15298 * 0.27311 * 4 2 1 6 6 C 1.39179 * 119.73327 * 180.27151 * 5 4 2 7 7 C 1.47660 * 119.98086 * 179.72957 * 6 5 4 8 8 O 1.21578 * 119.99845 * 172.57607 * 7 6 5 9 9 N 1.34773 * 119.99477 * 352.57510 * 7 6 5 10 10 C 1.47586 * 134.48628 * 174.65573 * 9 7 6 11 11 C 1.53951 * 86.11322 * 155.35520 * 10 9 7 12 12 O 1.42901 * 113.74334 * 269.15139 * 11 10 9 13 13 C 1.50698 * 113.73884 * 137.94938 * 11 10 9 14 14 H 1.08007 * 120.00492 * 1.92639 * 13 11 10 15 15 C 1.37880 * 120.00392 * 181.92550 * 13 11 10 16 16 N 1.31520 * 119.99340 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00457 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46625 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.46812 * 299.99981 * 17 15 13 20 20 H 1.48495 * 109.46822 * 59.99975 * 17 15 13 21 21 C 1.47813 * 134.46159 * 354.51870 * 9 7 6 22 22 C 1.40027 * 120.04210 * 359.44966 * 6 5 4 23 23 C 1.37631 * 120.30620 * 0.27596 * 22 6 5 24 24 C 1.38920 * 120.26785 * 0.02562 * 23 22 6 25 25 O 1.35437 * 120.02210 * 180.02562 * 24 23 22 26 26 C 1.42899 * 116.99992 * 2.99495 * 25 24 23 27 27 C 1.52998 * 109.47222 * 83.17595 * 26 25 24 28 28 C 1.53003 * 109.47234 * 203.18019 * 26 25 24 29 29 H 1.09003 * 109.46727 * 239.99751 * 1 2 3 30 30 H 1.08998 * 109.47069 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47626 * 119.99764 * 1 2 3 32 32 H 1.08004 * 120.13036 * 0.02562 * 5 4 2 33 33 H 1.09002 * 113.77136 * 41.05711 * 10 9 7 34 34 H 1.09003 * 113.87060 * 269.66594 * 10 9 7 35 35 H 0.96698 * 114.00089 * 178.07473 * 12 11 10 36 36 H 0.97005 * 119.99926 * 180.02562 * 16 15 13 37 37 H 1.09000 * 113.76555 * 90.37935 * 21 9 7 38 38 H 1.08995 * 113.83286 * 318.92126 * 21 9 7 39 39 H 1.08004 * 119.84853 * 180.25564 * 22 6 5 40 40 H 1.08007 * 119.86219 * 179.97438 * 23 22 6 41 41 H 1.09008 * 109.47375 * 323.17177 * 26 25 24 42 42 H 1.09007 * 109.46979 * 180.02562 * 27 26 25 43 43 H 1.08997 * 109.46999 * 299.99376 * 27 26 25 44 44 H 1.08995 * 109.47164 * 60.00124 * 27 26 25 45 45 H 1.08990 * 109.47321 * 59.99391 * 28 26 25 46 46 H 1.08998 * 109.47425 * 180.02562 * 28 26 25 47 47 H 1.09008 * 109.46251 * 299.99846 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2412 -1.2717 -0.0006 5 6 1.5463 -2.4826 -0.0069 6 6 2.2510 -3.6828 -0.0016 7 6 1.5216 -4.9667 -0.0022 8 8 2.1297 -6.0112 -0.1337 9 7 0.1818 -4.9805 0.1431 10 6 -0.8533 -6.0313 0.0916 11 6 -1.6945 -5.0997 0.9830 12 8 -1.5105 -5.3220 2.3826 13 6 -3.1464 -5.0278 0.5855 14 1 -3.5112 -5.6244 -0.2377 15 6 -4.0092 -4.2003 1.2725 16 7 -3.5651 -3.4742 2.2751 17 14 -5.8089 -4.1116 0.7802 18 1 -6.5186 -3.1567 1.6688 19 1 -5.9148 -3.6510 -0.6276 20 1 -6.4240 -5.4571 0.9084 21 6 -0.8402 -3.9493 0.4205 22 6 3.6512 -3.6737 -0.0017 23 6 4.3379 -2.4809 -0.0013 24 6 3.6475 -1.2754 -0.0002 25 8 4.3283 -0.1046 -0.0003 26 6 5.7536 -0.1829 -0.0680 27 6 6.1868 -0.3437 -1.5266 28 6 6.3626 1.0976 0.5067 29 1 -0.3633 -0.5139 0.8900 30 1 -0.3633 1.0276 0.0005 31 1 -0.3634 -0.5137 -0.8899 32 1 0.4663 -2.4879 -0.0118 33 1 -0.5607 -6.9606 0.5802 34 1 -1.2745 -6.1872 -0.9016 35 1 -2.0148 -4.7194 2.9462 36 1 -4.1721 -2.8923 2.7588 37 1 -1.2564 -3.4908 -0.4766 38 1 -0.5371 -3.2195 1.1712 39 1 4.1949 -4.6069 -0.0018 40 1 5.4180 -2.4823 -0.0009 41 1 6.0983 -1.0404 0.5101 42 1 7.2739 -0.4039 -1.5782 43 1 5.7530 -1.2560 -1.9359 44 1 5.8421 0.5137 -2.1046 45 1 6.0540 1.2121 1.5457 46 1 7.4497 1.0381 0.4547 47 1 6.0179 1.9550 -0.0714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647263453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:52 Heat of formation + Delta-G solvation = -92.376042 kcal Electronic energy + Delta-G solvation = -31185.907594 eV Core-core repulsion = 26914.929242 eV Total energy + Delta-G solvation = -4270.978351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.86974 -39.68021 -38.79334 -37.83182 -36.75857 -34.06853 -33.48285 -32.28415 -32.07342 -30.60754 -29.18650 -28.35646 -27.56606 -25.64571 -25.47160 -23.94639 -23.40722 -21.71251 -20.32062 -19.75329 -18.58339 -18.27768 -17.52690 -16.76798 -16.34256 -15.89520 -15.64881 -15.42036 -15.00823 -14.89769 -14.73468 -14.64830 -14.55981 -14.18589 -13.65929 -13.61512 -13.43097 -12.92096 -12.90223 -12.74089 -12.58023 -12.40113 -12.28696 -12.13384 -12.03491 -12.01542 -11.81833 -11.66193 -11.60853 -11.14836 -11.08527 -11.04262 -10.84728 -10.57667 -10.35878 -9.78786 -9.54798 -9.30041 -9.19489 -8.82572 -8.48468 -8.36456 -7.89848 -6.44995 -4.55562 0.64972 1.00795 2.36545 2.89417 3.12809 3.19609 3.20660 3.22343 3.42320 3.96502 4.07184 4.14354 4.41640 4.52876 4.60426 4.71727 4.78691 4.81827 4.84441 5.10327 5.18251 5.22268 5.26838 5.40119 5.43094 5.46578 5.47389 5.55268 5.56356 5.72866 5.78096 5.83474 5.85298 5.91581 6.03185 6.09108 6.16953 6.25449 6.31350 6.35572 6.45634 6.52648 6.65870 7.01386 7.20459 7.57212 7.67140 7.75196 8.35754 8.47770 8.65824 9.15863 9.36543 10.61538 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014564 B = 0.003108 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.055720 B = 9008.139458 C =10437.009653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.397 3.603 3 O -0.449 6.449 4 C -0.219 4.219 5 C -0.010 4.010 6 C -0.173 4.173 7 C 0.575 3.425 8 O -0.562 6.562 9 N -0.627 5.627 10 C 0.113 3.887 11 C 0.242 3.758 12 O -0.571 6.571 13 C -0.539 4.539 14 H 0.071 0.929 15 C 0.074 3.926 16 N -0.897 5.897 17 Si 0.906 3.094 18 H -0.285 1.285 19 H -0.273 1.273 20 H -0.274 1.274 21 C 0.066 3.934 22 C 0.009 3.991 23 C -0.240 4.240 24 C 0.205 3.795 25 O -0.276 6.276 26 C 0.067 3.933 27 C -0.180 4.180 28 C -0.146 4.146 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.482 7.963 -4.616 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.275 3.725 3 O -0.324 6.324 4 C -0.220 4.220 5 C -0.028 4.028 6 C -0.176 4.176 7 C 0.365 3.635 8 O -0.444 6.444 9 N -0.360 5.360 10 C -0.009 4.009 11 C 0.200 3.800 12 O -0.383 6.383 13 C -0.577 4.577 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.537 5.537 17 Si 0.733 3.267 18 H -0.210 1.210 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.056 4.056 22 C -0.011 4.011 23 C -0.258 4.258 24 C 0.157 3.843 25 O -0.187 6.187 26 C 0.011 3.989 27 C -0.237 4.237 28 C -0.203 4.203 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.176 0.824 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.579 7.869 -4.759 17.237 hybrid contribution -1.121 0.315 -0.056 1.166 sum 13.458 8.184 -4.815 16.471 Atomic orbital electron populations 1.22291 0.93298 1.05217 1.05182 1.22205 0.91561 0.87103 0.71593 1.90553 1.71998 1.33734 1.36124 1.19934 0.90623 0.95993 1.15486 1.22264 1.01695 0.89845 0.88992 1.19879 0.94023 0.93475 1.10231 1.17680 0.80904 0.88077 0.76808 1.90708 1.67219 1.33631 1.52833 1.50072 1.03560 1.14230 1.68112 1.23485 0.84197 0.93430 0.99741 1.19820 0.91710 0.87860 0.80626 1.86080 1.72788 1.62569 1.16828 1.21454 0.92944 1.25933 1.17336 0.91044 1.25054 0.99660 0.93959 0.94220 1.69386 1.36557 1.26915 1.20810 0.86407 0.83357 0.78267 0.78630 1.21002 1.19872 1.19881 1.24531 0.86007 0.95307 0.99764 1.21244 0.92805 0.98140 0.88865 1.21188 1.00678 0.91516 1.12419 1.19443 0.90827 0.85227 0.88850 1.86320 1.19730 1.27109 1.85545 1.22612 0.78755 1.00245 0.97292 1.22374 1.02041 1.03389 0.95907 1.21817 1.00149 0.96378 1.01977 0.88274 0.89667 0.88804 0.82373 0.90911 0.89364 0.75325 0.91558 0.89534 0.90704 0.84076 0.84256 0.90594 0.90859 0.91759 0.91242 0.91536 0.90528 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 8.92 36.01 0.32 -2.13 16 2 C 0.40 5.87 7.22 -30.83 -0.22 5.65 16 3 O -0.45 -7.72 15.88 -16.42 -0.26 -7.98 16 4 C -0.22 -3.26 5.88 -105.00 -0.62 -3.87 16 5 C -0.01 -0.15 8.48 -38.72 -0.33 -0.47 16 6 C -0.17 -2.88 5.87 -105.03 -0.62 -3.50 16 7 C 0.57 11.49 7.97 -12.41 -0.10 11.40 16 8 O -0.56 -12.62 17.08 5.30 0.09 -12.53 16 9 N -0.63 -12.59 3.60 -179.28 -0.64 -13.24 16 10 C 0.11 2.34 8.23 -2.96 -0.02 2.31 16 11 C 0.24 5.41 1.40 -90.84 -0.13 5.29 16 12 O -0.57 -13.96 13.48 -35.23 -0.48 -14.44 16 13 C -0.54 -12.65 8.61 -34.44 -0.30 -12.94 16 14 H 0.07 1.64 7.81 -52.48 -0.41 1.23 16 15 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16 16 N -0.90 -21.24 11.20 55.43 0.62 -20.62 16 17 Si 0.91 18.52 29.54 -169.99 -5.02 13.50 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C 0.07 1.29 5.59 -2.84 -0.02 1.27 16 22 C 0.01 0.12 9.57 -39.13 -0.37 -0.25 16 23 C -0.24 -2.99 8.29 -39.55 -0.33 -3.31 16 24 C 0.21 2.89 6.57 -38.42 -0.25 2.64 16 25 O -0.28 -3.76 7.86 -39.97 -0.31 -4.08 16 26 C 0.07 0.64 2.86 -26.73 -0.08 0.56 16 27 C -0.18 -1.47 9.25 37.16 0.34 -1.13 16 28 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16 29 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 30 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 32 H 0.16 2.36 3.07 -52.48 -0.16 2.20 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 35 H 0.39 9.63 6.60 45.56 0.30 9.93 16 36 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 37 H 0.09 1.55 7.99 -51.93 -0.41 1.14 16 38 H 0.07 1.43 6.91 -51.93 -0.36 1.07 16 39 H 0.14 1.92 7.65 -52.48 -0.40 1.52 16 40 H 0.14 1.33 5.65 -52.48 -0.30 1.03 16 41 H 0.08 0.63 5.99 -51.92 -0.31 0.32 16 42 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.06 0.56 7.30 -51.93 -0.38 0.19 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -29.38 388.14 -8.39 -37.77 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -5.78 Total: 13.43 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.45 Total: 2.33 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: -0.02 Total: -33.86 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -0.96 Total: -39.03 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.38 -8.39 -37.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647263453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.604 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds