Wall clock time and date at job start Wed Apr 1 2020 04:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47387 * 303.23502 * 3 2 1 5 5 C 1.53002 * 109.47242 * 183.23059 * 3 2 1 6 6 N 1.46498 * 109.47191 * 185.00308 * 5 3 2 7 7 C 1.34775 * 119.99829 * 179.72715 * 6 5 3 8 8 O 1.21285 * 120.00066 * 0.27176 * 7 6 5 9 9 C 1.50697 * 119.99877 * 180.27634 * 7 6 5 10 10 S 1.81004 * 109.47311 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00262 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99721 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99981 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00069 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00012 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47078 * 60.00155 * 15 13 11 17 17 H 1.48501 * 109.47170 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47017 * 300.00478 * 15 13 11 19 19 N 1.46906 * 109.46841 * 63.23334 * 3 2 1 20 20 C 1.46905 * 110.99881 * 58.33245 * 19 3 2 21 21 C 1.50696 * 109.46831 * 174.61016 * 20 19 3 22 22 C 1.38378 * 119.92872 * 269.72219 * 21 20 19 23 23 C 1.38344 * 120.31048 * 179.76530 * 22 21 20 24 24 C 1.37971 * 120.14475 * 0.51675 * 23 22 21 25 25 C 1.39608 * 119.84954 * 359.73960 * 24 23 22 26 26 C 1.43200 * 120.15357 * 179.97438 * 25 24 23 27 27 N 7.87158 * 63.76864 * 71.29807 * 2 1 3 28 28 C 1.37926 * 119.92340 * 90.00298 * 21 20 19 29 29 H 1.08994 * 109.47063 * 53.62989 * 1 2 3 30 30 H 1.08997 * 109.47159 * 173.62718 * 1 2 3 31 31 H 1.09001 * 109.46648 * 293.63028 * 1 2 3 32 32 H 1.09007 * 109.46774 * 240.00340 * 2 1 3 33 33 H 1.08999 * 109.47224 * 120.00404 * 2 1 3 34 34 H 1.08999 * 109.46822 * 65.00514 * 5 3 2 35 35 H 1.09001 * 109.47166 * 305.00525 * 5 3 2 36 36 H 0.97003 * 120.00086 * 0.02562 * 6 5 3 37 37 H 1.09000 * 109.47441 * 299.99666 * 9 7 6 38 38 H 1.09004 * 109.47383 * 60.00152 * 9 7 6 39 39 H 0.96997 * 120.00028 * 179.97438 * 14 13 11 40 40 H 1.00896 * 111.00015 * 294.38010 * 19 3 2 41 41 H 1.08995 * 109.46892 * 294.61589 * 20 19 3 42 42 H 1.08999 * 109.47284 * 54.61268 * 20 19 3 43 43 H 1.08007 * 119.84778 * 0.02562 * 22 21 20 44 44 H 1.07993 * 119.92561 * 180.25694 * 23 22 21 45 45 H 1.08002 * 120.07599 * 179.76957 * 24 23 22 46 46 H 1.08006 * 120.07740 * 359.94819 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6301 1.9728 -0.8595 5 6 3.5679 1.4432 -0.0813 6 7 4.0626 2.8169 0.0389 7 6 5.3873 3.0618 0.0000 8 8 6.1696 2.1456 -0.1393 9 6 5.8966 4.4742 0.1299 10 16 7.7044 4.4744 0.0410 11 6 8.0191 6.1994 0.2139 12 1 7.1965 6.8894 0.3302 13 6 9.3244 6.6715 0.2007 14 7 10.3270 5.8305 0.0585 15 14 9.6581 8.5001 0.3848 16 1 9.1186 8.9734 1.6849 17 1 11.1224 8.7432 0.3391 18 1 8.9986 9.2376 -0.7227 19 7 1.6151 2.1120 1.2367 20 6 2.1173 1.4005 2.4198 21 6 1.7759 2.1852 3.6602 22 6 2.6626 3.1306 4.1449 23 6 2.3550 3.8589 5.2802 24 6 1.1652 3.6391 5.9432 25 6 0.2683 2.6831 5.4628 26 6 -0.9682 2.4493 6.1461 27 7 -1.9492 2.2641 6.6881 28 6 0.5829 1.9554 4.3131 29 1 -0.3633 0.6094 -0.8274 30 1 -0.3633 -1.0213 -0.1141 31 1 -0.3633 0.4119 0.9415 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8809 1.0268 -1.0387 35 1 3.9751 0.8382 0.7288 36 1 3.4369 3.5497 0.1507 37 1 5.4926 5.0820 -0.6797 38 1 5.5803 4.8879 1.0875 39 1 11.2391 6.1605 0.0489 40 1 0.6111 2.2060 1.2704 41 1 1.6550 0.4150 2.4744 42 1 3.1992 1.2906 2.3457 43 1 3.5972 3.3037 3.6321 44 1 3.0497 4.5981 5.6507 45 1 0.9279 4.2057 6.8315 46 1 -0.1066 1.2146 3.9359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732191301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:41 Heat of formation + Delta-G solvation = 8.787553 kcal Electronic energy + Delta-G solvation = -26738.257041 eV Core-core repulsion = 22946.711095 eV Total energy + Delta-G solvation = -3791.545947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.17457 -39.32050 -38.05937 -36.77296 -34.05500 -33.34918 -32.41491 -31.66446 -30.97118 -29.85729 -27.73089 -25.87321 -25.44477 -24.25658 -23.46728 -22.27328 -20.42973 -19.99579 -18.90995 -17.78882 -16.74599 -16.65926 -16.32863 -16.10252 -15.91905 -15.25906 -14.99452 -14.79391 -14.68115 -14.52383 -14.28635 -13.96930 -13.86561 -13.56564 -13.45211 -13.20715 -13.12951 -12.84027 -12.68361 -12.58343 -12.50822 -12.26718 -11.86009 -11.71960 -11.63524 -11.40277 -11.27323 -11.12363 -11.03035 -11.02813 -10.75460 -9.80680 -9.39676 -9.34928 -9.24167 -9.04939 -8.83140 -8.74282 -8.21381 -6.48035 -6.20273 -3.90462 0.41465 0.88163 2.28510 2.57865 3.07457 3.16613 3.24140 3.28492 3.32260 3.42694 3.48279 3.73511 3.98094 4.22119 4.31621 4.41689 4.42523 4.58009 4.62568 4.65840 4.84908 4.93924 5.03328 5.07656 5.11532 5.14783 5.22487 5.27767 5.29610 5.39397 5.50217 5.53700 5.57305 5.63526 5.73525 5.80608 5.83775 5.88645 5.94228 5.98254 6.16005 6.18618 6.40870 6.53070 6.75313 6.95415 7.09873 7.60703 7.86294 8.36462 8.70308 9.25021 10.87034 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.002461 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.329102 B =11375.814418 C =13743.570140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.076 3.924 4 H 0.093 0.907 5 C 0.128 3.872 6 N -0.726 5.726 7 C 0.529 3.471 8 O -0.524 6.524 9 C -0.151 4.151 10 S -0.062 6.062 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.674 5.674 20 C 0.088 3.912 21 C -0.080 4.080 22 C -0.062 4.062 23 C -0.117 4.117 24 C -0.070 4.070 25 C -0.035 4.035 26 C 0.257 3.743 27 N -0.423 5.423 28 C -0.067 4.067 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.405 0.595 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.344 0.656 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.131 0.869 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.293 -8.827 5.320 24.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.034 4.034 4 H 0.111 0.889 5 C 0.003 3.997 6 N -0.381 5.381 7 C 0.315 3.685 8 O -0.399 6.399 9 C -0.302 4.302 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.200 1.200 19 N -0.305 5.305 20 C -0.040 4.040 21 C -0.080 4.080 22 C -0.081 4.081 23 C -0.135 4.135 24 C -0.091 4.091 25 C -0.039 4.039 26 C -0.058 4.058 27 N -0.098 5.098 28 C -0.088 4.088 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.240 0.760 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.164 0.836 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.795 -10.225 5.895 24.785 hybrid contribution -1.226 1.867 0.165 2.240 sum -23.021 -8.357 6.060 25.230 Atomic orbital electron populations 1.21764 0.95386 1.02157 1.01704 1.22200 0.96450 0.97912 1.03412 1.21928 0.95069 0.93233 0.93218 0.88883 1.21289 0.91589 0.84823 1.01969 1.45822 1.07174 1.08846 1.76224 1.20300 0.81649 0.91003 0.75520 1.90700 1.55479 1.46120 1.47612 1.23506 1.06537 0.95386 1.04770 1.85387 0.91910 1.10681 1.95529 1.22827 0.95109 0.92396 1.57970 0.91004 1.24985 0.95096 0.98872 0.94631 1.70006 0.99243 1.34563 1.46520 0.86242 0.77335 0.83189 0.78838 1.19948 1.20862 1.19956 1.60576 1.17594 1.51769 1.00552 1.21020 1.02117 0.93991 0.86902 1.19671 0.93956 0.97808 0.96598 1.21444 0.99318 0.92766 0.94547 1.21202 0.96616 1.00080 0.95649 1.21207 0.93067 0.95498 0.99316 1.15927 0.89631 1.01453 0.96853 1.25777 0.92950 0.93629 0.93467 1.81264 1.11270 1.08324 1.08962 1.21015 0.96416 0.98062 0.93294 0.92300 0.92398 0.93012 0.90819 0.91195 0.91363 0.91826 0.75977 0.89396 0.89316 0.92169 0.83645 0.93536 0.88928 0.84669 0.84564 0.85109 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.49 37.16 0.35 -0.33 16 2 C -0.16 -0.86 5.11 -26.73 -0.14 -0.99 16 3 C 0.08 0.48 2.72 -67.71 -0.18 0.29 16 4 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 5 C 0.13 1.27 4.72 -4.04 -0.02 1.25 16 6 N -0.73 -8.75 5.39 -60.29 -0.32 -9.08 16 7 C 0.53 9.31 7.85 -10.99 -0.09 9.23 16 8 O -0.52 -11.44 15.86 5.55 0.09 -11.35 16 9 C -0.15 -2.93 6.16 36.00 0.22 -2.71 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.53 -14.96 9.50 30.94 0.29 -14.66 16 12 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 15 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 N -0.67 -3.95 5.76 -107.99 -0.62 -4.57 16 20 C 0.09 0.55 4.97 -4.98 -0.02 0.53 16 21 C -0.08 -0.53 5.43 -104.69 -0.57 -1.10 16 22 C -0.06 -0.45 9.69 -39.49 -0.38 -0.84 16 23 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 24 C -0.07 -0.45 9.76 -39.17 -0.38 -0.83 16 25 C -0.04 -0.25 5.73 -106.93 -0.61 -0.86 16 26 C 0.26 2.31 15.33 -22.47 -0.34 1.97 16 27 N -0.42 -4.81 18.54 41.84 0.78 -4.04 16 28 C -0.07 -0.42 9.40 -39.17 -0.37 -0.79 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.21 7.19 -51.93 -0.37 -0.16 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.39 6.32 -51.93 -0.33 0.07 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.69 6.59 -51.93 -0.34 0.34 16 36 H 0.41 4.10 8.14 -40.82 -0.33 3.77 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 38 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.34 1.68 7.51 -39.29 -0.30 1.39 16 41 H 0.05 0.25 6.45 -51.93 -0.34 -0.08 16 42 H 0.09 0.75 6.13 -51.93 -0.32 0.43 16 43 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 405.26 15.07 6.11 6.11 Total: -1.00 -34.46 405.26 -9.73 -44.19 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.52 Total: 0.70 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.74 Total: -9.06 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.56 Total: -42.82 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.46 -9.73 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732191301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.978 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds