Wall clock time and date at job start Wed Apr 1 2020 04:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47387 * 303.23502 * 3 2 1 5 5 C 1.53002 * 109.47242 * 183.23059 * 3 2 1 6 6 N 1.46498 * 109.47191 * 185.00308 * 5 3 2 7 7 C 1.34775 * 119.99829 * 179.72715 * 6 5 3 8 8 O 1.21285 * 120.00066 * 0.27176 * 7 6 5 9 9 C 1.50697 * 119.99877 * 180.27634 * 7 6 5 10 10 S 1.81004 * 109.47311 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00262 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99721 * 0.02562 * 11 10 9 13 13 C 1.38802 * 119.99981 * 180.02562 * 11 10 9 14 14 N 1.31627 * 120.00069 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00012 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47078 * 60.00155 * 15 13 11 17 17 H 1.48501 * 109.47170 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47017 * 300.00478 * 15 13 11 19 19 N 1.46906 * 109.46841 * 63.23334 * 3 2 1 20 20 C 1.46905 * 110.99881 * 58.33245 * 19 3 2 21 21 C 1.50696 * 109.46831 * 174.61016 * 20 19 3 22 22 C 1.38378 * 119.92872 * 269.72219 * 21 20 19 23 23 C 1.38344 * 120.31048 * 179.76530 * 22 21 20 24 24 C 1.37971 * 120.14475 * 0.51675 * 23 22 21 25 25 C 1.39608 * 119.84954 * 359.73960 * 24 23 22 26 26 C 1.43200 * 120.15357 * 179.97438 * 25 24 23 27 27 N 7.87158 * 63.76864 * 71.29807 * 2 1 3 28 28 C 1.37926 * 119.92340 * 90.00298 * 21 20 19 29 29 H 1.08994 * 109.47063 * 53.62989 * 1 2 3 30 30 H 1.08997 * 109.47159 * 173.62718 * 1 2 3 31 31 H 1.09001 * 109.46648 * 293.63028 * 1 2 3 32 32 H 1.09007 * 109.46774 * 240.00340 * 2 1 3 33 33 H 1.08999 * 109.47224 * 120.00404 * 2 1 3 34 34 H 1.08999 * 109.46822 * 65.00514 * 5 3 2 35 35 H 1.09001 * 109.47166 * 305.00525 * 5 3 2 36 36 H 0.97003 * 120.00086 * 0.02562 * 6 5 3 37 37 H 1.09000 * 109.47441 * 299.99666 * 9 7 6 38 38 H 1.09004 * 109.47383 * 60.00152 * 9 7 6 39 39 H 0.96997 * 120.00028 * 179.97438 * 14 13 11 40 40 H 1.00896 * 111.00015 * 294.38010 * 19 3 2 41 41 H 1.08995 * 109.46892 * 294.61589 * 20 19 3 42 42 H 1.08999 * 109.47284 * 54.61268 * 20 19 3 43 43 H 1.08007 * 119.84778 * 0.02562 * 22 21 20 44 44 H 1.07993 * 119.92561 * 180.25694 * 23 22 21 45 45 H 1.08002 * 120.07599 * 179.76957 * 24 23 22 46 46 H 1.08006 * 120.07740 * 359.94819 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6301 1.9728 -0.8595 5 6 3.5679 1.4432 -0.0813 6 7 4.0626 2.8169 0.0389 7 6 5.3873 3.0618 0.0000 8 8 6.1696 2.1456 -0.1393 9 6 5.8966 4.4742 0.1299 10 16 7.7044 4.4744 0.0410 11 6 8.0191 6.1994 0.2139 12 1 7.1965 6.8894 0.3302 13 6 9.3244 6.6715 0.2007 14 7 10.3270 5.8305 0.0585 15 14 9.6581 8.5001 0.3848 16 1 9.1186 8.9734 1.6849 17 1 11.1224 8.7432 0.3391 18 1 8.9986 9.2376 -0.7227 19 7 1.6151 2.1120 1.2367 20 6 2.1173 1.4005 2.4198 21 6 1.7759 2.1852 3.6602 22 6 2.6626 3.1306 4.1449 23 6 2.3550 3.8589 5.2802 24 6 1.1652 3.6391 5.9432 25 6 0.2683 2.6831 5.4628 26 6 -0.9682 2.4493 6.1461 27 7 -1.9492 2.2641 6.6881 28 6 0.5829 1.9554 4.3131 29 1 -0.3633 0.6094 -0.8274 30 1 -0.3633 -1.0213 -0.1141 31 1 -0.3633 0.4119 0.9415 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8809 1.0268 -1.0387 35 1 3.9751 0.8382 0.7288 36 1 3.4369 3.5497 0.1507 37 1 5.4926 5.0820 -0.6797 38 1 5.5803 4.8879 1.0875 39 1 11.2391 6.1605 0.0489 40 1 0.6111 2.2060 1.2704 41 1 1.6550 0.4150 2.4744 42 1 3.1992 1.2906 2.3457 43 1 3.5972 3.3037 3.6321 44 1 3.0497 4.5981 5.6507 45 1 0.9279 4.2057 6.8315 46 1 -0.1066 1.2146 3.9359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732191301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:40 Heat of formation + Delta-G solvation = -13.772188 kcal Electronic energy + Delta-G solvation = -26739.235305 eV Core-core repulsion = 22946.711095 eV Total energy + Delta-G solvation = -3792.524210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85275 -40.37099 -38.87942 -37.51155 -35.14856 -34.53629 -33.91136 -32.21831 -31.59829 -31.06396 -28.65910 -27.58622 -26.42611 -24.83565 -24.12083 -22.79541 -21.54541 -20.83424 -19.73427 -19.46223 -17.67395 -17.33716 -17.18281 -17.12851 -16.83443 -16.67875 -16.26111 -15.88797 -15.73786 -15.22558 -15.09148 -14.85967 -14.75425 -14.50714 -14.35596 -14.16690 -14.04541 -13.96560 -13.63554 -13.33558 -13.17739 -13.11882 -13.06877 -12.83385 -12.66509 -12.60868 -12.32184 -12.21830 -11.92678 -11.78801 -11.68892 -11.64790 -11.08678 -10.84570 -10.20962 -9.97003 -9.89389 -9.77983 -9.29891 -8.60542 -8.30102 -6.07150 -0.15946 0.38324 1.32316 1.46736 1.51242 1.58925 1.61779 1.74356 1.93892 2.31235 2.43101 2.83254 2.87859 3.03863 3.35901 3.43291 3.74843 3.86237 3.94215 4.04542 4.14181 4.17077 4.22410 4.31465 4.37798 4.43171 4.47761 4.60052 4.61504 4.64139 4.68614 4.82148 4.86781 4.90074 4.99985 5.09406 5.19837 5.27980 5.32454 5.42146 5.45475 5.46286 5.57470 5.64216 5.89056 6.04241 6.24238 6.42108 6.52881 6.69934 7.11340 7.40234 8.78648 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.002461 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.329102 B =11375.814418 C =13743.570140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.090 3.910 4 H 0.104 0.896 5 C 0.126 3.874 6 N -0.697 5.697 7 C 0.532 3.468 8 O -0.573 6.573 9 C -0.127 4.127 10 S -0.152 6.152 11 C -0.544 4.544 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.996 3.004 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.263 1.263 19 N -0.674 5.674 20 C 0.093 3.907 21 C -0.081 4.081 22 C -0.072 4.072 23 C -0.122 4.122 24 C -0.067 4.067 25 C -0.044 4.044 26 C 0.281 3.719 27 N -0.469 5.469 28 C -0.058 4.058 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.419 0.581 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.270 0.730 40 H 0.356 0.644 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.539 -7.625 5.472 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.196 4.196 3 C -0.021 4.021 4 H 0.122 0.878 5 C 0.001 3.999 6 N -0.350 5.350 7 C 0.317 3.683 8 O -0.452 6.452 9 C -0.278 4.278 10 S 0.075 5.925 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.818 3.182 16 H -0.186 1.186 17 H -0.206 1.206 18 H -0.188 1.188 19 N -0.307 5.307 20 C -0.036 4.036 21 C -0.081 4.081 22 C -0.091 4.091 23 C -0.139 4.139 24 C -0.087 4.087 25 C -0.048 4.048 26 C -0.034 4.034 27 N -0.145 5.145 28 C -0.079 4.079 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.256 0.744 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.176 0.824 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.144 0.856 44 H 0.165 0.835 45 H 0.163 0.837 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.118 -9.017 6.051 26.450 hybrid contribution -0.604 1.421 0.108 1.548 sum -24.722 -7.596 6.159 26.585 Atomic orbital electron populations 1.21736 0.94249 1.02385 1.02294 1.22150 0.97281 0.96887 1.03238 1.21778 0.92094 0.94307 0.93871 0.87799 1.21468 0.94195 0.82958 1.01238 1.45562 1.05274 1.10520 1.73653 1.20018 0.83068 0.89627 0.75555 1.90690 1.57088 1.47044 1.50365 1.23347 1.00664 0.97307 1.06520 1.85565 0.99393 1.11637 1.95872 1.23167 0.95801 0.92523 1.57700 0.89947 1.26103 0.94783 1.04305 0.93980 1.70177 0.99726 1.37101 1.47808 0.85040 0.77251 0.76445 0.79491 1.18556 1.20595 1.18757 1.60523 1.18456 1.51615 1.00093 1.20926 1.01041 0.94668 0.86930 1.19663 0.93989 0.97713 0.96778 1.21502 0.99216 0.93367 0.95006 1.21330 0.96910 1.00260 0.95440 1.21372 0.92642 0.95141 0.99575 1.15991 0.89129 1.02295 0.97336 1.25963 0.92668 0.92288 0.92435 1.81288 1.12724 1.09986 1.10498 1.21135 0.96339 0.97839 0.92624 0.91947 0.92363 0.92219 0.91126 0.91390 0.92215 0.92585 0.74357 0.87692 0.87258 0.92095 0.82371 0.92216 0.90849 0.85640 0.83529 0.83711 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.49 71.98 0.68 -0.24 16 2 C -0.16 -1.33 5.11 30.59 0.16 -1.18 16 3 C 0.09 0.93 2.72 44.91 0.12 1.05 16 4 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 5 C 0.13 2.35 4.72 86.38 0.41 2.76 16 6 N -0.70 -15.80 5.39 -463.06 -2.50 -18.30 16 7 C 0.53 18.53 7.85 87.66 0.69 19.22 16 8 O -0.57 -25.58 15.86 -3.05 -0.05 -25.63 16 9 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 10 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 11 C -0.54 -30.50 9.50 67.96 0.65 -29.86 16 12 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 13 C 0.01 0.73 5.49 84.86 0.47 1.20 16 14 N -0.91 -55.47 13.22 21.65 0.29 -55.18 16 15 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 19 N -0.67 -6.16 5.76 -495.57 -2.85 -9.01 16 20 C 0.09 0.99 4.97 85.55 0.43 1.41 16 21 C -0.08 -0.92 5.43 -19.91 -0.11 -1.03 16 22 C -0.07 -0.96 9.69 22.33 0.22 -0.75 16 23 C -0.12 -1.42 10.03 22.23 0.22 -1.19 16 24 C -0.07 -0.73 9.76 22.54 0.22 -0.51 16 25 C -0.04 -0.54 5.73 -21.36 -0.12 -0.67 16 26 C 0.28 4.67 15.33 88.33 1.35 6.03 16 27 N -0.47 -10.33 18.54 19.00 0.35 -9.98 16 28 C -0.06 -0.59 9.40 22.54 0.21 -0.38 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.28 7.19 -2.39 -0.02 0.27 16 32 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.63 6.32 -2.39 -0.02 0.61 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.19 6.59 -2.39 -0.02 1.17 16 36 H 0.42 7.42 8.14 -92.71 -0.75 6.66 16 37 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 40 H 0.36 2.28 7.51 -89.70 -0.67 1.61 16 41 H 0.06 0.50 6.45 -2.39 -0.02 0.48 16 42 H 0.07 1.11 6.13 -2.39 -0.01 1.09 16 43 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 46 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -77.14 405.26 1.72 -75.42 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.41 Total: 15.71 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 6.03 Total: -8.55 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -4.71 Total: -92.47 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -77.14 1.72 -75.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732191301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.645 kcal (2) G-P(sol) polarization free energy of solvation -77.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds