Wall clock time and date at job start Wed Apr 1 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47159 * 2 1 4 4 C 1.34235 * 116.99863 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99908 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.46965 * 205.00102 * 6 4 3 8 8 C 1.53002 * 109.47244 * 84.99886 * 6 4 3 9 9 N 1.46503 * 109.47174 * 325.00204 * 6 4 3 10 10 C 1.34779 * 120.00015 * 180.02562 * 9 6 4 11 11 O 1.21718 * 119.99886 * 359.97438 * 10 9 6 12 12 C 1.46247 * 120.00078 * 179.97438 * 10 9 6 13 13 C 1.35019 * 120.00244 * 179.97438 * 12 10 9 14 14 C 1.46960 * 120.00391 * 179.97438 * 13 12 10 15 15 C 1.40026 * 120.10276 * 179.97438 * 14 13 12 16 16 C 1.37594 * 119.89669 * 180.02562 * 15 14 13 17 17 C 1.39186 * 120.10270 * 0.25827 * 16 15 14 18 18 O 1.35570 * 119.89533 * 179.72239 * 17 16 15 19 19 C 1.34778 * 117.00452 * 354.44371 * 18 17 16 20 20 H 1.08005 * 119.99749 * 5.06251 * 19 18 17 21 21 C 1.38712 * 120.00163 * 185.05579 * 19 18 17 22 22 N 1.31509 * 120.00296 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00148 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.46816 * 89.99824 * 23 21 19 25 25 H 1.48492 * 109.47685 * 209.99719 * 23 21 19 26 26 H 1.48500 * 109.47051 * 330.00436 * 23 21 19 27 27 C 1.39173 * 120.19870 * 359.49053 * 17 16 15 28 28 C 1.37597 * 120.10372 * 0.50460 * 27 17 16 29 29 H 1.08993 * 109.47017 * 300.00236 * 1 2 3 30 30 H 1.09003 * 109.46932 * 60.00048 * 1 2 3 31 31 H 1.08993 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47134 * 239.99890 * 2 1 3 33 33 H 1.08999 * 109.47299 * 120.00285 * 2 1 3 34 34 H 1.09004 * 109.46794 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46879 * 299.99818 * 7 6 4 36 36 H 1.08999 * 109.47087 * 60.00299 * 7 6 4 37 37 H 1.09000 * 109.47219 * 300.00090 * 8 6 4 38 38 H 1.09010 * 109.46605 * 59.99958 * 8 6 4 39 39 H 1.08996 * 109.47057 * 179.97438 * 8 6 4 40 40 H 0.96995 * 120.00073 * 359.97438 * 9 6 4 41 41 H 1.08003 * 119.99859 * 359.97438 * 12 10 9 42 42 H 1.08003 * 119.99897 * 359.97438 * 13 12 10 43 43 H 1.07997 * 120.04753 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.95146 * 179.97438 * 16 15 14 45 45 H 0.97003 * 120.00347 * 179.97438 * 22 21 19 46 46 H 1.08004 * 119.94780 * 180.26075 * 27 17 16 47 47 H 1.08000 * 120.05081 * 179.76535 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.3241 2.9090 -0.6080 8 6 3.9991 3.4563 1.4384 9 7 3.0622 3.8213 -0.7911 10 6 3.3826 5.1228 -0.9323 11 8 4.3851 5.5639 -0.4012 12 6 2.5258 6.0052 -1.7236 13 6 2.8465 7.3091 -1.8646 14 6 1.9859 8.1957 -2.6603 15 6 2.3162 9.5484 -2.8075 16 6 1.5071 10.3748 -3.5529 17 6 0.3589 9.8692 -4.1558 18 8 -0.4383 10.6884 -4.8847 19 6 -0.1263 11.9995 -4.8905 20 1 0.7718 12.3431 -4.3986 21 6 -0.9584 12.9077 -5.5284 22 7 -0.6543 14.1871 -5.5336 23 14 -2.5120 12.3136 -6.3787 24 1 -3.6419 12.3329 -5.4151 25 1 -2.8224 13.2070 -7.5234 26 1 -2.3068 10.9284 -6.8731 27 6 0.0295 8.5242 -4.0165 28 6 0.8327 7.6903 -3.2730 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.7405 3.9164 -0.6080 35 1 5.9628 2.2514 -0.0185 36 1 5.2683 2.5394 -1.6319 37 1 2.9994 3.4764 1.8723 38 1 4.6379 2.7985 2.0278 39 1 4.4161 4.4633 1.4388 40 1 2.2636 3.4698 -1.2147 41 1 1.6366 5.6137 -2.1952 42 1 3.7355 7.7007 -1.3927 43 1 3.2046 9.9425 -2.3366 44 1 1.7607 11.4184 -3.6667 45 1 -1.2360 14.8221 -5.9800 46 1 -0.8602 8.1352 -4.4896 47 1 0.5742 6.6475 -3.1624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066545360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:28 Heat of formation + Delta-G solvation = -110.468166 kcal Electronic energy + Delta-G solvation = -28948.636038 eV Core-core repulsion = 24676.873153 eV Total energy + Delta-G solvation = -4271.762885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.35557 -39.80648 -39.32874 -37.35735 -37.08468 -35.87366 -33.33474 -32.53865 -32.14328 -31.70008 -30.54543 -28.36278 -27.65231 -25.79058 -25.42558 -23.59073 -22.83896 -22.31168 -21.09464 -20.12399 -19.51784 -18.53218 -18.02972 -17.46549 -17.36086 -17.09869 -16.51007 -15.44517 -15.05501 -15.00020 -14.92209 -14.55889 -14.23688 -14.11799 -14.06385 -13.95131 -13.69351 -13.49367 -13.25348 -12.87205 -12.71247 -12.61611 -12.47200 -12.43261 -12.36932 -12.20884 -12.07095 -11.91588 -11.82802 -11.66035 -11.21166 -11.03633 -11.02599 -10.92032 -10.77341 -10.29040 -9.72610 -9.68149 -9.56738 -9.38273 -8.94005 -8.48907 -7.26719 -6.62032 -4.25768 0.94146 1.62096 2.01802 2.07921 2.42761 2.95188 3.10516 3.14482 3.27579 3.44248 4.06795 4.07296 4.40617 4.43828 4.47733 4.49083 4.58278 4.61224 4.77826 4.87593 4.92365 5.13962 5.16950 5.29878 5.30549 5.36635 5.40852 5.43404 5.50984 5.51845 5.54093 5.57658 5.83885 5.92108 5.94462 5.98749 6.00367 6.16345 6.28106 6.37480 6.50749 6.65345 6.90492 7.06957 7.13609 7.21311 7.39312 7.40063 7.60981 7.82330 8.18438 8.71164 9.31277 10.44111 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.001758 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.235802 B =15923.233875 C =17178.990310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.466 3.534 5 O -0.495 6.495 6 C 0.195 3.805 7 C -0.156 4.156 8 C -0.164 4.164 9 N -0.725 5.725 10 C 0.564 3.436 11 O -0.549 6.549 12 C -0.280 4.280 13 C 0.040 3.960 14 C -0.191 4.191 15 C -0.036 4.036 16 C -0.230 4.230 17 C 0.174 3.826 18 O -0.202 6.202 19 C -0.392 4.392 20 H 0.111 0.889 21 C 0.066 3.934 22 N -0.866 5.866 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.258 1.258 27 C -0.200 4.200 28 C -0.044 4.044 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.407 0.593 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.137 0.863 45 H 0.283 0.717 46 H 0.121 0.879 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -24.449 10.386 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.308 3.692 5 O -0.381 6.381 6 C 0.107 3.893 7 C -0.214 4.214 8 C -0.222 4.222 9 N -0.380 5.380 10 C 0.357 3.643 11 O -0.430 6.430 12 C -0.301 4.301 13 C 0.020 3.980 14 C -0.192 4.192 15 C -0.054 4.054 16 C -0.249 4.249 17 C 0.119 3.881 18 O -0.104 6.104 19 C -0.466 4.466 20 H 0.128 0.872 21 C -0.140 4.140 22 N -0.502 5.502 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.182 1.182 27 C -0.219 4.219 28 C -0.063 4.063 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.243 0.757 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.155 0.845 45 H 0.094 0.906 46 H 0.139 0.861 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.512 -24.261 10.533 26.831 hybrid contribution -1.063 -0.441 -0.581 1.290 sum 3.448 -24.702 9.952 26.854 Atomic orbital electron populations 1.21822 0.92215 1.03177 1.03864 1.23109 0.95689 0.79759 1.02743 1.86513 1.24168 1.32905 1.83518 1.23749 0.80893 0.92248 0.72354 1.90688 1.60513 1.42263 1.44639 1.20188 0.91661 0.82524 0.94927 1.22188 0.92960 1.05239 1.00980 1.22265 1.03364 1.04643 0.91914 1.45907 1.28641 1.09349 1.54127 1.18344 0.85064 0.81051 0.79866 1.90724 1.27529 1.75433 1.49276 1.22401 1.03585 0.94948 1.09123 1.22305 0.94937 0.92111 0.88624 1.18518 0.99086 0.93940 1.07672 1.21043 0.97417 0.92073 0.94895 1.21224 0.97273 1.01677 1.04758 1.19372 0.89626 0.90281 0.88809 1.83502 1.48866 1.19670 1.58411 1.20877 1.10882 0.77816 1.37071 0.87173 1.24543 0.98945 0.94052 0.96417 1.69616 1.38444 1.01067 1.41046 0.86155 0.81660 0.79748 0.79251 1.19626 1.20514 1.18203 1.20145 1.03120 0.91559 1.07083 1.20888 0.92791 0.98260 0.94316 0.91290 0.91186 0.90088 0.91032 0.91091 0.88420 0.90591 0.92034 0.91511 0.91160 0.88031 0.75724 0.85785 0.85659 0.86504 0.84504 0.90637 0.86128 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.29 37.16 0.38 -0.30 16 2 C 0.06 0.39 6.19 37.16 0.23 0.62 16 3 O -0.35 -3.02 9.43 -39.27 -0.37 -3.39 16 4 C 0.47 4.64 6.74 36.00 0.24 4.88 16 5 O -0.50 -5.94 15.84 -18.75 -0.30 -6.24 16 6 C 0.19 1.91 1.01 -132.97 -0.13 1.77 16 7 C -0.16 -1.57 7.93 37.16 0.29 -1.28 16 8 C -0.16 -1.53 8.38 37.16 0.31 -1.22 16 9 N -0.73 -7.06 5.03 -50.11 -0.25 -7.31 16 10 C 0.56 6.85 7.15 -13.04 -0.09 6.76 16 11 O -0.55 -7.98 12.43 5.17 0.06 -7.92 16 12 C -0.28 -3.36 9.41 -37.51 -0.35 -3.71 16 13 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 14 C -0.19 -2.99 5.87 -105.03 -0.62 -3.60 16 15 C -0.04 -0.61 9.78 -39.15 -0.38 -0.99 16 16 C -0.23 -4.60 9.14 -39.46 -0.36 -4.96 16 17 C 0.17 3.72 6.66 -38.88 -0.26 3.46 16 18 O -0.20 -4.97 8.57 0.75 0.01 -4.96 16 19 C -0.39 -10.37 9.94 30.91 0.31 -10.06 16 20 H 0.11 2.97 5.41 -52.48 -0.28 2.68 16 21 C 0.07 1.74 5.49 -17.51 -0.10 1.65 16 22 N -0.87 -23.69 13.96 55.48 0.77 -22.92 16 23 Si 0.91 20.38 28.62 -169.99 -4.86 15.52 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.26 -5.81 7.11 56.52 0.40 -5.40 16 27 C -0.20 -3.61 9.97 -39.47 -0.39 -4.00 16 28 C -0.04 -0.68 9.40 -39.15 -0.37 -1.05 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 34 H 0.10 1.11 6.16 -51.93 -0.32 0.79 16 35 H 0.08 0.71 7.87 -51.93 -0.41 0.31 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.10 1.11 6.16 -51.93 -0.32 0.79 16 40 H 0.41 3.24 7.89 -40.82 -0.32 2.92 16 41 H 0.12 1.26 6.07 -52.48 -0.32 0.95 16 42 H 0.13 1.68 7.52 -52.48 -0.39 1.29 16 43 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.14 2.86 5.62 -52.49 -0.29 2.57 16 45 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 47 H 0.12 1.46 6.16 -52.49 -0.32 1.13 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -29.59 396.44 -6.95 -36.54 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.35 Total: 6.53 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -1.64 Total: -11.83 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.52 Total: -30.23 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.60 Total: -22.51 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.86 Total: 15.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.59 -6.95 -36.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066545360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.928 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds