Wall clock time and date at job start Wed Apr 1 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47159 * 2 1 4 4 C 1.34235 * 116.99863 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00118 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99908 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.46965 * 205.00102 * 6 4 3 8 8 C 1.53002 * 109.47244 * 84.99886 * 6 4 3 9 9 N 1.46503 * 109.47174 * 325.00204 * 6 4 3 10 10 C 1.34779 * 120.00015 * 180.02562 * 9 6 4 11 11 O 1.21718 * 119.99886 * 359.97438 * 10 9 6 12 12 C 1.46247 * 120.00078 * 179.97438 * 10 9 6 13 13 C 1.35019 * 120.00244 * 179.97438 * 12 10 9 14 14 C 1.46960 * 120.00391 * 179.97438 * 13 12 10 15 15 C 1.40026 * 120.10276 * 179.97438 * 14 13 12 16 16 C 1.37594 * 119.89669 * 180.02562 * 15 14 13 17 17 C 1.39186 * 120.10270 * 0.25827 * 16 15 14 18 18 O 1.35570 * 119.89533 * 179.72239 * 17 16 15 19 19 C 1.34778 * 117.00452 * 354.44371 * 18 17 16 20 20 H 1.08005 * 119.99749 * 5.06251 * 19 18 17 21 21 C 1.38712 * 120.00163 * 185.05579 * 19 18 17 22 22 N 1.31509 * 120.00296 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00148 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.46816 * 89.99824 * 23 21 19 25 25 H 1.48492 * 109.47685 * 209.99719 * 23 21 19 26 26 H 1.48500 * 109.47051 * 330.00436 * 23 21 19 27 27 C 1.39173 * 120.19870 * 359.49053 * 17 16 15 28 28 C 1.37597 * 120.10372 * 0.50460 * 27 17 16 29 29 H 1.08993 * 109.47017 * 300.00236 * 1 2 3 30 30 H 1.09003 * 109.46932 * 60.00048 * 1 2 3 31 31 H 1.08993 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47134 * 239.99890 * 2 1 3 33 33 H 1.08999 * 109.47299 * 120.00285 * 2 1 3 34 34 H 1.09004 * 109.46794 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46879 * 299.99818 * 7 6 4 36 36 H 1.08999 * 109.47087 * 60.00299 * 7 6 4 37 37 H 1.09000 * 109.47219 * 300.00090 * 8 6 4 38 38 H 1.09010 * 109.46605 * 59.99958 * 8 6 4 39 39 H 1.08996 * 109.47057 * 179.97438 * 8 6 4 40 40 H 0.96995 * 120.00073 * 359.97438 * 9 6 4 41 41 H 1.08003 * 119.99859 * 359.97438 * 12 10 9 42 42 H 1.08003 * 119.99897 * 359.97438 * 13 12 10 43 43 H 1.07997 * 120.04753 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.95146 * 179.97438 * 16 15 14 45 45 H 0.97003 * 120.00347 * 179.97438 * 22 21 19 46 46 H 1.08004 * 119.94780 * 180.26075 * 27 17 16 47 47 H 1.08000 * 120.05081 * 179.76535 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 6 5.3241 2.9090 -0.6080 8 6 3.9991 3.4563 1.4384 9 7 3.0622 3.8213 -0.7911 10 6 3.3826 5.1228 -0.9323 11 8 4.3851 5.5639 -0.4012 12 6 2.5258 6.0052 -1.7236 13 6 2.8465 7.3091 -1.8646 14 6 1.9859 8.1957 -2.6603 15 6 2.3162 9.5484 -2.8075 16 6 1.5071 10.3748 -3.5529 17 6 0.3589 9.8692 -4.1558 18 8 -0.4383 10.6884 -4.8847 19 6 -0.1263 11.9995 -4.8905 20 1 0.7718 12.3431 -4.3986 21 6 -0.9584 12.9077 -5.5284 22 7 -0.6543 14.1871 -5.5336 23 14 -2.5120 12.3136 -6.3787 24 1 -3.6419 12.3329 -5.4151 25 1 -2.8224 13.2070 -7.5234 26 1 -2.3068 10.9284 -6.8731 27 6 0.0295 8.5242 -4.0165 28 6 0.8327 7.6903 -3.2730 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.7405 3.9164 -0.6080 35 1 5.9628 2.2514 -0.0185 36 1 5.2683 2.5394 -1.6319 37 1 2.9994 3.4764 1.8723 38 1 4.6379 2.7985 2.0278 39 1 4.4161 4.4633 1.4388 40 1 2.2636 3.4698 -1.2147 41 1 1.6366 5.6137 -2.1952 42 1 3.7355 7.7007 -1.3927 43 1 3.2046 9.9425 -2.3366 44 1 1.7607 11.4184 -3.6667 45 1 -1.2360 14.8221 -5.9800 46 1 -0.8602 8.1352 -4.4896 47 1 0.5742 6.6475 -3.1624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066545360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:26 Heat of formation + Delta-G solvation = -127.205280 kcal Electronic energy + Delta-G solvation = -28949.361813 eV Core-core repulsion = 24676.873153 eV Total energy + Delta-G solvation = -4272.488661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.14936 -40.98057 -40.64588 -38.63463 -38.01699 -36.80669 -34.75094 -34.21330 -32.74278 -32.52183 -31.97386 -29.71279 -28.43176 -27.44253 -26.27395 -24.67568 -23.78525 -23.49833 -22.23934 -21.02332 -20.65952 -19.84369 -19.25255 -18.98265 -18.38907 -17.81870 -17.38129 -16.70932 -16.39042 -16.05096 -15.93781 -15.77131 -15.62370 -15.44989 -15.23281 -14.98090 -14.72576 -14.37205 -14.24344 -14.23367 -14.04626 -13.67911 -13.45618 -13.38087 -13.25038 -13.12668 -13.04375 -12.91155 -12.71611 -12.58006 -12.53496 -12.45392 -12.33453 -11.92618 -11.72712 -11.57499 -11.28747 -11.13062 -10.73294 -10.64171 -10.26491 -9.89327 -8.72056 -8.52622 -6.24287 -0.25611 0.57579 0.83893 1.12665 1.33319 1.38073 1.39813 1.53030 2.07166 2.26996 2.35965 2.81740 3.02335 3.17458 3.36229 3.68791 3.79866 3.81540 3.95744 4.00949 4.05461 4.07256 4.29717 4.34333 4.37063 4.47511 4.56184 4.60061 4.65911 4.67942 4.71568 4.81223 4.86407 4.94090 5.04966 5.12559 5.15403 5.17469 5.24991 5.29005 5.34279 5.37141 5.41094 5.60712 5.72682 5.82802 5.85454 6.16658 6.46080 6.54257 6.80637 7.23324 7.52302 8.58137 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.018222 B = 0.001758 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.235802 B =15923.233875 C =17178.990310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.473 3.527 5 O -0.518 6.518 6 C 0.192 3.808 7 C -0.152 4.152 8 C -0.161 4.161 9 N -0.710 5.710 10 C 0.560 3.440 11 O -0.571 6.571 12 C -0.239 4.239 13 C 0.016 3.984 14 C -0.160 4.160 15 C -0.045 4.045 16 C -0.244 4.244 17 C 0.135 3.865 18 O -0.234 6.234 19 C -0.403 4.403 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.195 4.195 28 C -0.040 4.040 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.419 0.581 41 H 0.154 0.846 42 H 0.127 0.873 43 H 0.140 0.860 44 H 0.112 0.888 45 H 0.286 0.714 46 H 0.138 0.862 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -28.996 11.476 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.269 6.269 4 C 0.316 3.684 5 O -0.405 6.405 6 C 0.105 3.895 7 C -0.210 4.210 8 C -0.218 4.218 9 N -0.365 5.365 10 C 0.352 3.648 11 O -0.452 6.452 12 C -0.260 4.260 13 C -0.004 4.004 14 C -0.161 4.161 15 C -0.063 4.063 16 C -0.264 4.264 17 C 0.085 3.915 18 O -0.140 6.140 19 C -0.479 4.479 20 H 0.102 0.898 21 C -0.188 4.188 22 N -0.557 5.557 23 Si 0.793 3.207 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.184 1.184 27 C -0.214 4.214 28 C -0.057 4.057 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.257 0.743 41 H 0.172 0.828 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.130 0.870 45 H 0.096 0.904 46 H 0.156 0.844 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.880 -28.876 11.652 31.379 hybrid contribution -0.549 0.403 -0.568 0.887 sum 3.331 -28.473 11.084 30.735 Atomic orbital electron populations 1.21839 0.90448 1.04387 1.03890 1.23366 0.97027 0.78693 1.02892 1.86505 1.23134 1.34262 1.83002 1.23623 0.81266 0.91771 0.71776 1.90688 1.61144 1.42879 1.45833 1.20206 0.91486 0.82644 0.95182 1.22124 0.93264 1.04467 1.01170 1.22217 1.03942 1.03908 0.91769 1.45769 1.28791 1.08551 1.53405 1.18412 0.84796 0.81740 0.79819 1.90747 1.28500 1.76011 1.49992 1.22723 1.03193 0.94024 1.06020 1.22169 0.95477 0.92593 0.90188 1.18830 0.98552 0.93375 1.05303 1.21298 0.97813 0.92681 0.94524 1.21229 0.98013 1.01212 1.05907 1.19957 0.90093 0.91532 0.89929 1.83458 1.50458 1.18621 1.61494 1.20748 1.10377 0.79349 1.37389 0.89847 1.25334 1.02003 0.94123 0.97358 1.69705 1.40214 1.02128 1.43656 0.85204 0.77963 0.79036 0.78465 1.18966 1.19360 1.18353 1.20497 1.03984 0.90125 1.06767 1.21368 0.91681 1.00044 0.92620 0.91342 0.91002 0.88342 0.90902 0.91046 0.89722 0.90147 0.91998 0.90776 0.90138 0.89543 0.74319 0.82831 0.85550 0.84270 0.86986 0.90417 0.84432 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 71.98 0.74 -0.10 16 2 C 0.05 0.54 6.19 71.98 0.45 0.99 16 3 O -0.35 -4.87 9.43 -51.47 -0.49 -5.36 16 4 C 0.47 8.10 6.74 71.23 0.48 8.58 16 5 O -0.52 -11.29 15.84 21.97 0.35 -10.94 16 6 C 0.19 3.23 1.01 2.86 0.00 3.23 16 7 C -0.15 -2.75 7.93 71.98 0.57 -2.18 16 8 C -0.16 -2.58 8.38 71.98 0.60 -1.98 16 9 N -0.71 -11.01 5.03 -430.66 -2.17 -13.18 16 10 C 0.56 11.38 7.15 86.32 0.62 12.00 16 11 O -0.57 -14.99 12.43 -4.41 -0.05 -15.04 16 12 C -0.24 -4.48 9.41 23.61 0.22 -4.26 16 13 C 0.02 0.36 9.45 23.82 0.23 0.58 16 14 C -0.16 -4.46 5.87 -20.13 -0.12 -4.58 16 15 C -0.05 -1.48 9.78 22.55 0.22 -1.26 16 16 C -0.24 -10.16 9.14 22.35 0.20 -9.96 16 17 C 0.14 5.92 6.66 22.72 0.15 6.07 16 18 O -0.23 -12.06 8.57 -20.23 -0.17 -12.23 16 19 C -0.40 -22.83 9.94 67.93 0.68 -22.15 16 20 H 0.08 4.97 5.41 -2.91 -0.02 4.95 16 21 C 0.01 0.63 5.49 84.85 0.47 1.09 16 22 N -0.92 -53.29 13.96 21.62 0.30 -52.99 16 23 Si 0.97 43.54 28.62 68.60 1.96 45.50 16 24 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 27 C -0.19 -6.63 9.97 22.34 0.22 -6.41 16 28 C -0.04 -1.05 9.40 22.55 0.21 -0.84 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 33 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 34 H 0.08 1.78 6.16 -2.38 -0.01 1.77 16 35 H 0.08 1.37 7.87 -2.39 -0.02 1.35 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.09 1.71 6.16 -2.39 -0.01 1.70 16 40 H 0.42 4.64 7.89 -92.71 -0.73 3.90 16 41 H 0.15 2.00 6.07 -2.91 -0.02 1.98 16 42 H 0.13 3.00 7.52 -2.91 -0.02 2.98 16 43 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 44 H 0.11 5.16 5.62 -2.91 -0.02 5.15 16 45 H 0.29 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.17 2.87 6.16 -2.91 -0.02 2.85 16 Total: -1.00 -68.74 396.44 5.95 -62.78 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.28 Total: 22.62 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 5.94 Total: -21.17 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -1.87 Total: -66.17 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.37 Total: -43.57 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.96 Total: 45.50 kcal Total: -68.74 5.95 -62.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066545360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.421 kcal (2) G-P(sol) polarization free energy of solvation -68.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds