Wall clock time and date at job start Wed Apr 1 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47072 * 2 1 4 4 C 1.46895 * 111.00052 * 297.33398 * 3 2 1 5 5 C 1.53006 * 109.46767 * 288.29204 * 4 3 2 6 6 C 1.53003 * 109.46854 * 180.02562 * 5 4 3 7 7 S 1.81001 * 109.46799 * 180.02562 * 6 5 4 8 8 C 1.76198 * 100.00116 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99582 * 0.02562 * 8 7 6 10 10 C 1.38795 * 120.00262 * 179.97438 * 8 7 6 11 11 N 1.31626 * 120.00049 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00104 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46898 * 90.00272 * 12 10 8 14 14 H 1.48503 * 109.47291 * 210.00484 * 12 10 8 15 15 H 1.48507 * 109.47148 * 330.00718 * 12 10 8 16 16 C 1.46900 * 110.99780 * 61.28366 * 3 2 1 17 17 C 1.50706 * 109.47224 * 66.04830 * 16 3 2 18 18 N 1.30414 * 118.28055 * 275.01869 * 17 16 3 19 19 C 1.34670 * 121.75015 * 180.02562 * 18 17 16 20 20 O 1.21894 * 120.97123 * 179.97438 * 19 18 17 21 21 C 1.47386 * 118.06569 * 359.96044 * 19 18 17 22 22 C 1.39287 * 122.08589 * 179.74367 * 21 19 18 23 23 C 1.37790 * 119.45211 * 179.76112 * 22 21 19 24 24 C 1.38797 * 120.47607 * 0.54461 * 23 22 21 25 25 C 1.37884 * 120.70539 * 359.69639 * 24 23 22 26 26 C 1.38839 * 119.67391 * 0.02780 * 25 24 23 27 27 N 1.34436 * 118.28914 * 94.99504 * 17 16 3 28 28 H 0.97004 * 119.75286 * 0.02585 * 27 17 16 29 29 H 1.09002 * 109.46943 * 301.76964 * 1 2 3 30 30 H 1.08992 * 109.47468 * 61.76615 * 1 2 3 31 31 H 1.09004 * 109.46919 * 181.77524 * 1 2 3 32 32 H 1.09002 * 109.46780 * 240.00050 * 2 1 3 33 33 H 1.09006 * 109.46713 * 120.00015 * 2 1 3 34 34 H 1.08996 * 109.47579 * 48.29188 * 4 3 2 35 35 H 1.09000 * 109.46893 * 168.29395 * 4 3 2 36 36 H 1.09005 * 109.46941 * 300.01891 * 5 4 3 37 37 H 1.08999 * 109.47121 * 60.01652 * 5 4 3 38 38 H 1.08993 * 109.46968 * 299.99382 * 6 5 4 39 39 H 1.09000 * 109.47070 * 60.00005 * 6 5 4 40 40 H 0.97000 * 120.00331 * 179.97438 * 11 10 8 41 41 H 1.08998 * 109.47423 * 306.04646 * 16 3 2 42 42 H 1.08998 * 109.47032 * 186.04338 * 16 3 2 43 43 H 1.07997 * 120.26882 * 0.27587 * 22 21 19 44 44 H 1.08000 * 119.76416 * 180.24403 * 23 22 21 45 45 H 1.08004 * 119.64192 * 179.72418 * 24 23 22 46 46 H 1.07999 * 120.16739 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6015 2.0912 -1.2183 5 6 2.3923 1.5571 -2.4142 6 6 1.9572 2.2931 -3.6831 7 16 2.8922 1.6608 -5.0980 8 6 2.2095 2.6530 -6.3840 9 1 1.4460 3.3820 -6.1560 10 6 2.6535 2.4984 -7.6899 11 7 3.5844 1.6102 -7.9677 12 14 1.9292 3.5498 -9.0535 13 1 2.7248 4.7958 -9.1935 14 1 1.9627 2.7947 -10.3318 15 1 0.5240 3.8949 -8.7191 16 6 1.5739 2.1009 1.2028 17 6 2.2220 1.4916 2.4193 18 7 1.6562 0.4509 2.9649 19 6 2.1750 -0.1485 4.0536 20 8 1.6340 -1.1203 4.5523 21 6 3.4161 0.4046 4.6244 22 6 4.0217 -0.1458 5.7515 23 6 5.1844 0.4121 6.2366 24 6 5.7452 1.5205 5.6172 25 6 5.1540 2.0790 4.5038 26 6 3.9851 1.5277 3.9966 27 7 3.3533 2.0488 2.8850 28 1 3.7283 2.8231 2.4370 29 1 -0.3633 0.5411 0.8737 30 1 -0.3634 0.4861 -0.9053 31 1 -0.3633 -1.0272 0.0318 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5367 1.9288 -1.3850 35 1 1.7927 3.1582 -1.1034 36 1 3.4572 1.7193 -2.2473 37 1 2.2009 0.4902 -2.5292 38 1 0.8924 2.1310 -3.8500 39 1 2.1487 3.3600 -3.5680 40 1 3.8945 1.5019 -8.8804 41 1 0.4903 2.0234 1.2911 42 1 1.8581 3.1505 1.1271 43 1 3.5879 -1.0079 6.2362 44 1 5.6603 -0.0131 7.1078 45 1 6.6545 1.9497 6.0114 46 1 5.5980 2.9412 4.0285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072513296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:05 Heat of formation + Delta-G solvation = 15.555069 kcal Electronic energy + Delta-G solvation = -26903.480825 eV Core-core repulsion = 23112.228340 eV Total energy + Delta-G solvation = -3791.252485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87741 -39.09391 -38.31494 -37.60046 -34.00463 -33.13181 -32.43755 -31.62029 -31.27897 -29.94624 -27.73881 -25.70797 -24.99793 -24.49309 -23.78918 -22.95880 -21.78004 -19.95294 -19.34698 -18.88765 -18.01939 -17.48905 -16.64873 -16.40481 -15.98748 -15.50005 -15.46808 -14.85875 -14.81938 -14.61429 -14.47364 -14.37396 -13.96475 -13.76512 -13.57221 -12.98322 -12.81020 -12.71804 -12.64447 -12.38204 -11.98167 -11.88826 -11.81039 -11.71174 -11.41923 -11.26118 -11.08420 -10.94819 -10.79675 -10.66075 -10.34739 -10.24040 -9.60821 -9.59760 -9.42831 -9.07394 -8.60711 -8.54795 -8.31407 -6.54282 -6.24193 -3.94526 0.22547 0.45064 1.20983 2.17710 2.75209 3.19106 3.20543 3.27515 3.33190 3.53724 3.63930 3.91150 3.98889 4.10556 4.21125 4.32885 4.47771 4.64825 4.66924 4.75428 4.94308 5.03887 5.06078 5.11871 5.23914 5.27267 5.30394 5.35060 5.42107 5.42319 5.53494 5.59782 5.68006 5.77385 5.87702 5.89047 5.96424 6.01241 6.09952 6.23259 6.27881 6.34948 6.46314 6.52797 6.67841 6.80671 6.88388 7.45527 7.58906 7.83431 8.34954 9.22103 10.83903 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.001826 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.761004 B =15327.534049 C =16019.040419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 N -0.529 5.529 4 C 0.055 3.945 5 C -0.091 4.091 6 C -0.113 4.113 7 S -0.132 6.132 8 C -0.516 4.516 9 H 0.072 0.928 10 C 0.070 3.930 11 N -0.869 5.869 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.081 3.919 17 C 0.467 3.533 18 N -0.592 5.592 19 C 0.534 3.466 20 O -0.487 6.487 21 C -0.213 4.213 22 C -0.027 4.027 23 C -0.153 4.153 24 C -0.058 4.058 25 C -0.161 4.161 26 C 0.179 3.821 27 N -0.614 5.614 28 H 0.425 0.575 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.267 0.733 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.141 0.859 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 3.755 27.945 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.085 4.085 3 N -0.254 5.254 4 C -0.073 4.073 5 C -0.130 4.130 6 C -0.262 4.262 7 S 0.097 5.903 8 C -0.665 4.665 9 H 0.090 0.910 10 C -0.138 4.138 11 N -0.505 5.505 12 Si 0.744 3.256 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C -0.049 4.049 17 C 0.197 3.803 18 N -0.334 5.334 19 C 0.322 3.678 20 O -0.362 6.362 21 C -0.221 4.221 22 C -0.046 4.046 23 C -0.172 4.172 24 C -0.077 4.077 25 C -0.182 4.182 26 C 0.077 3.923 27 N -0.234 5.234 28 H 0.263 0.737 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.159 0.841 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.623 1.721 27.962 28.138 hybrid contribution -1.229 2.304 -0.738 2.713 sum 1.394 4.025 27.224 27.556 Atomic orbital electron populations 1.22318 0.97570 1.02896 1.01702 1.22315 0.93804 0.88792 1.03600 1.62302 1.59488 1.03149 1.00431 1.22311 0.98613 0.97875 0.88504 1.21240 1.00447 1.00141 0.91160 1.23227 1.02686 1.01795 0.98490 1.84669 1.53420 1.53585 0.98664 1.22683 1.26282 1.24040 0.93461 0.90988 1.25016 0.94967 0.95692 0.98153 1.70018 1.27460 1.32651 1.20352 0.86175 0.79355 0.79762 0.80282 1.20295 1.20760 1.19704 1.21389 0.99853 0.97598 0.86011 1.22742 0.80495 0.86310 0.90761 1.69271 1.35212 1.12084 1.16799 1.19096 0.82666 0.84107 0.81965 1.90777 1.61583 1.24338 1.59515 1.21032 1.01384 0.98847 1.00879 1.21128 0.93342 0.97713 0.92460 1.21230 0.96732 0.97545 1.01675 1.21203 0.98668 0.94363 0.93428 1.20681 0.95297 1.02846 0.99423 1.18047 0.93415 0.93412 0.87404 1.42415 1.23344 1.31337 1.26321 0.73662 0.91995 0.92420 0.91906 0.89867 0.89929 0.93390 0.90735 0.90857 0.91476 0.92289 0.92178 0.92303 0.89294 0.88112 0.84131 0.84913 0.84699 0.84411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 9.28 37.16 0.34 -1.67 16 2 C 0.04 0.48 5.61 -3.82 -0.02 0.46 16 3 N -0.53 -5.30 4.66 -236.07 -1.10 -6.40 16 4 C 0.06 0.61 4.83 -3.82 -0.02 0.59 16 5 C -0.09 -1.35 5.26 -26.73 -0.14 -1.49 16 6 C -0.11 -2.13 5.67 37.16 0.21 -1.92 16 7 S -0.13 -3.36 21.44 -107.50 -2.30 -5.66 16 8 C -0.52 -14.54 9.50 30.94 0.29 -14.25 16 9 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 10 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 11 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 12 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.08 0.62 5.06 -4.97 -0.03 0.59 16 17 C 0.47 4.25 6.64 -156.03 -1.04 3.21 16 18 N -0.59 -7.47 8.73 -10.63 -0.09 -7.57 16 19 C 0.53 7.56 7.98 -12.59 -0.10 7.46 16 20 O -0.49 -8.44 17.48 5.01 0.09 -8.35 16 21 C -0.21 -2.31 5.89 -104.86 -0.62 -2.93 16 22 C -0.03 -0.25 9.68 -39.36 -0.38 -0.63 16 23 C -0.15 -0.95 10.02 -39.54 -0.40 -1.35 16 24 C -0.06 -0.30 10.01 -39.50 -0.40 -0.69 16 25 C -0.16 -0.91 9.96 -39.49 -0.39 -1.31 16 26 C 0.18 1.46 6.66 -83.91 -0.56 0.90 16 27 N -0.61 -4.16 5.32 -8.23 -0.04 -4.21 16 28 H 0.42 1.48 8.57 -40.82 -0.35 1.13 16 29 H 0.06 0.65 6.21 -51.93 -0.32 0.33 16 30 H 0.06 0.62 6.32 -51.93 -0.33 0.30 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.03 6.60 -51.93 -0.34 0.68 16 33 H 0.08 1.06 6.25 -51.93 -0.32 0.73 16 34 H 0.05 0.53 5.91 -51.93 -0.31 0.22 16 35 H 0.07 0.71 7.81 -51.93 -0.41 0.31 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 38 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.09 0.70 6.00 -51.93 -0.31 0.38 16 42 H 0.10 0.46 7.74 -51.93 -0.40 0.05 16 43 H 0.14 1.25 7.83 -52.49 -0.41 0.83 16 44 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.14 0.33 8.06 -52.48 -0.42 -0.09 16 46 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -35.74 388.08 -11.58 -47.33 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.36 Total: -1.07 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -3.33 Total: -11.14 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.50 Total: -43.17 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.30 Total: -5.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.74 -11.58 -47.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072513296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.880 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds