Wall clock time and date at job start Wed Apr 1 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47221 * 2 1 4 4 C 1.35975 * 116.99843 * 180.02562 * 3 2 1 5 5 C 1.38724 * 119.98034 * 179.97438 * 4 3 2 6 6 C 1.38089 * 120.00836 * 180.02562 * 5 4 3 7 7 C 1.38845 * 119.98830 * 359.97438 * 6 5 4 8 8 N 1.40113 * 120.01529 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99981 * 302.85857 * 8 7 6 10 10 C 1.50699 * 109.46971 * 270.00127 * 9 8 7 11 11 H 1.07997 * 120.00286 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00111 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00235 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99894 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47098 * 89.99526 * 14 12 10 16 16 H 1.48507 * 109.46778 * 330.00220 * 14 12 10 17 17 H 1.48498 * 109.47163 * 210.00049 * 14 12 10 18 18 C 1.34771 * 120.00380 * 122.85799 * 8 7 6 19 19 O 1.21298 * 119.99510 * 354.31815 * 18 8 7 20 20 C 1.50690 * 120.00497 * 174.31629 * 18 8 7 21 21 H 1.09002 * 115.55162 * 325.67072 * 20 18 8 22 22 C 1.53001 * 117.49809 * 111.37964 * 20 18 8 23 23 C 1.52998 * 60.00338 * 107.49229 * 22 20 18 24 24 H 1.08998 * 117.50100 * 252.51300 * 23 22 20 25 25 C 1.50699 * 117.52038 * 107.47928 * 23 22 20 26 26 O 1.20830 * 120.00122 * 291.37524 * 25 23 22 27 27 O 1.34226 * 119.99967 * 111.37180 * 25 23 22 28 28 C 1.45199 * 117.00208 * 179.97438 * 27 25 23 29 29 C 1.38848 * 119.96879 * 0.25851 * 7 6 5 30 30 C 1.38086 * 119.98335 * 359.50924 * 29 7 6 31 31 H 1.09008 * 109.46964 * 60.00206 * 1 2 3 32 32 H 1.09002 * 109.47278 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47789 * 300.00357 * 1 2 3 34 34 H 1.08998 * 109.47264 * 239.99649 * 2 1 3 35 35 H 1.09004 * 109.46538 * 119.99970 * 2 1 3 36 36 H 1.07997 * 119.99756 * 0.02562 * 5 4 3 37 37 H 1.08001 * 120.00319 * 179.97438 * 6 5 4 38 38 H 1.08992 * 109.46905 * 149.99791 * 9 8 7 39 39 H 1.09000 * 109.47044 * 30.00062 * 9 8 7 40 40 H 0.97003 * 119.99696 * 179.97438 * 13 12 10 41 41 H 1.09003 * 117.49912 * 214.98677 * 22 20 18 42 42 H 1.08995 * 117.50178 * 359.97438 * 22 20 18 43 43 H 1.09000 * 109.47440 * 179.97438 * 28 27 25 44 44 H 1.08997 * 109.47482 * 300.00590 * 28 27 25 45 45 H 1.09008 * 109.46921 * 60.00438 * 28 27 25 46 46 H 1.08003 * 120.00625 * 179.74689 * 29 7 6 47 47 H 1.08004 * 119.98855 * 180.21598 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8842 2.8074 -0.0011 6 6 5.2531 2.9890 -0.0022 7 6 6.0992 1.8880 -0.0022 8 7 7.4882 2.0716 -0.0038 9 6 8.1231 2.8491 -1.0709 10 6 8.4963 1.9318 -2.2069 11 1 8.2824 0.8753 -2.1404 12 6 9.1118 2.4412 -3.3306 13 7 9.4379 1.6406 -4.3217 14 14 9.4825 4.2685 -3.4453 15 1 10.8328 4.5356 -2.8881 16 1 8.4685 5.0288 -2.6712 17 1 9.4407 4.6938 -4.8675 18 6 8.2404 1.5329 0.9762 19 8 7.7075 0.9778 1.9139 20 6 9.7431 1.6202 0.9071 21 1 10.1716 1.5686 -0.0938 22 6 10.4469 2.5118 1.9321 23 6 10.5408 0.9893 2.0503 24 1 9.9785 0.5111 2.8523 25 6 11.8585 0.3442 1.7062 26 8 12.2481 0.3388 0.5624 27 8 12.5994 -0.2244 2.6702 28 6 13.8570 -0.8273 2.2660 29 6 5.5681 0.6052 -0.0065 30 6 4.1990 0.4250 -0.0006 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5139 0.8900 36 1 3.2260 3.6637 -0.0007 37 1 5.6655 3.9871 -0.0031 38 1 9.0204 3.3320 -0.6840 39 1 7.4282 3.6082 -1.4301 40 1 9.8706 1.9991 -5.1124 41 1 11.3384 3.0473 1.6055 42 1 9.8229 3.0357 2.6561 43 1 14.3550 -1.2489 3.1391 44 1 13.6645 -1.6173 1.5402 45 1 14.4958 -0.0677 1.8154 46 1 6.2256 -0.2516 -0.0106 47 1 3.7859 -0.5729 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108809081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:23 Heat of formation + Delta-G solvation = -95.710759 kcal Electronic energy + Delta-G solvation = -30354.477197 eV Core-core repulsion = 26083.354242 eV Total energy + Delta-G solvation = -4271.122956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.68916 -40.15968 -39.37562 -37.56541 -36.58690 -35.44342 -34.98605 -32.58200 -31.80250 -30.67700 -29.13644 -28.22958 -27.52279 -25.02744 -24.03685 -23.84262 -22.54965 -22.06355 -21.18008 -20.32815 -18.69857 -18.12792 -17.91701 -17.07484 -16.89674 -16.40148 -16.22700 -16.08063 -16.01526 -15.58626 -14.60422 -14.46900 -14.20250 -14.13190 -13.70536 -13.38548 -13.29476 -13.27963 -13.09801 -12.78966 -12.65160 -12.51070 -12.26655 -12.19099 -12.01856 -11.88482 -11.72984 -11.67734 -11.15041 -10.83325 -10.78192 -10.72224 -10.65693 -10.58915 -10.40122 -10.32105 -10.30269 -9.67471 -9.41441 -8.73669 -8.68842 -8.54236 -7.36176 -6.21225 -4.23890 1.63075 1.70476 2.17066 2.59493 2.93053 3.18032 3.24295 3.26056 3.28845 3.56982 3.95255 4.09810 4.26253 4.69767 4.81718 4.83356 4.87305 4.88791 5.07199 5.08176 5.09098 5.14409 5.16485 5.17489 5.20915 5.38634 5.46906 5.48581 5.62052 5.63831 5.66084 5.67579 5.86493 5.89736 5.97666 6.11437 6.29036 6.34182 6.42133 6.46905 6.57046 6.61658 6.82656 6.89488 7.32765 7.40418 7.62951 7.85470 7.90434 8.33382 8.67150 8.84623 9.36209 10.91348 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.003366 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.925216 B = 8316.853972 C =10446.034304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.111 3.889 5 C -0.140 4.140 6 C -0.090 4.090 7 C 0.140 3.860 8 N -0.541 5.541 9 C 0.208 3.792 10 C -0.543 4.543 11 H 0.079 0.921 12 C 0.080 3.920 13 N -0.886 5.886 14 Si 0.868 3.132 15 H -0.271 1.271 16 H -0.263 1.263 17 H -0.282 1.282 18 C 0.553 3.447 19 O -0.551 6.551 20 C -0.142 4.142 21 H 0.160 0.840 22 C -0.121 4.121 23 C -0.142 4.142 24 H 0.146 0.854 25 C 0.489 3.511 26 O -0.492 6.492 27 O -0.357 6.357 28 C 0.035 3.965 29 C -0.066 4.066 30 C -0.194 4.194 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.267 0.733 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.124 0.876 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -0.554 12.423 13.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.234 6.234 4 C 0.067 3.933 5 C -0.159 4.159 6 C -0.110 4.110 7 C 0.049 3.951 8 N -0.266 5.266 9 C 0.088 3.912 10 C -0.581 4.581 11 H 0.097 0.903 12 C -0.124 4.124 13 N -0.523 5.523 14 Si 0.695 3.305 15 H -0.197 1.197 16 H -0.188 1.188 17 H -0.208 1.208 18 C 0.342 3.658 19 O -0.430 6.430 20 C -0.163 4.163 21 H 0.177 0.823 22 C -0.159 4.159 23 C -0.161 4.161 24 H 0.164 0.836 25 C 0.332 3.668 26 O -0.378 6.378 27 O -0.274 6.274 28 C -0.059 4.059 29 C -0.085 4.085 30 C -0.213 4.213 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.142 0.858 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.907 -0.716 12.343 13.302 hybrid contribution 0.680 0.434 -0.647 1.034 sum -4.227 -0.282 11.696 12.439 Atomic orbital electron populations 1.21762 0.93059 1.02610 1.03339 1.22728 0.95527 0.82460 1.01451 1.86031 1.19327 1.28822 1.89242 1.18867 0.81864 0.94117 0.98495 1.20127 0.94360 0.94661 1.06757 1.20887 0.92035 0.98488 0.99607 1.17457 0.83178 0.92890 1.01623 1.45455 1.03739 1.52004 1.25442 1.20006 0.93459 0.92025 0.85687 1.21274 1.40492 0.96409 0.99965 0.90257 1.24833 0.94670 0.97646 0.95248 1.69882 1.40312 1.35214 1.06879 0.86967 0.79554 0.85879 0.78134 1.19677 1.18788 1.20777 1.19388 0.87526 0.77619 0.81275 1.90651 1.74146 1.44480 1.33689 1.22480 0.91844 1.03404 0.98533 0.82276 1.23058 1.02656 0.89707 1.00462 1.21626 0.93031 0.97421 1.04063 0.83642 1.22592 0.85271 0.75698 0.83282 1.90751 1.70956 1.54810 1.21243 1.86474 1.33128 1.67636 1.40168 1.23262 0.82651 0.98033 1.01921 1.20930 0.94281 0.96663 0.96676 1.21005 0.93650 0.97845 1.08800 0.91602 0.90592 0.91680 0.92049 0.92180 0.85240 0.85207 0.94531 0.94261 0.92294 0.87093 0.86789 0.88209 0.91788 0.91898 0.85792 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.84 16 2 C 0.05 0.58 5.46 37.16 0.20 0.78 16 3 O -0.32 -4.54 10.14 -19.66 -0.20 -4.74 16 4 C 0.11 1.77 6.69 -39.23 -0.26 1.51 16 5 C -0.14 -2.20 9.98 -39.46 -0.39 -2.59 16 6 C -0.09 -1.56 9.32 -39.41 -0.37 -1.93 16 7 C 0.14 2.76 5.14 -83.62 -0.43 2.33 16 8 N -0.54 -11.19 2.56 -114.70 -0.29 -11.48 16 9 C 0.21 4.57 3.78 -5.19 -0.02 4.55 16 10 C -0.54 -14.38 9.38 -34.44 -0.32 -14.70 16 11 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 13 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 14 Si 0.87 19.80 27.47 -169.99 -4.67 15.13 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.55 11.07 7.24 -10.99 -0.08 10.99 16 19 O -0.55 -11.66 15.67 5.54 0.09 -11.57 16 20 C -0.14 -2.56 4.23 -91.77 -0.39 -2.95 16 21 H 0.16 3.33 6.55 -51.93 -0.34 2.99 16 22 C -0.12 -1.67 9.94 -26.73 -0.27 -1.94 16 23 C -0.14 -2.19 5.81 -91.77 -0.53 -2.73 16 24 H 0.15 2.15 7.67 -51.93 -0.40 1.75 16 25 C 0.49 7.91 7.74 36.00 0.28 8.19 16 26 O -0.49 -9.57 16.01 -18.75 -0.30 -9.87 16 27 O -0.36 -4.90 10.56 -39.25 -0.41 -5.31 16 28 C 0.04 0.37 10.56 101.05 1.07 1.43 16 29 C -0.07 -1.24 8.99 -39.41 -0.35 -1.60 16 30 C -0.19 -3.15 9.03 -39.46 -0.36 -3.50 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 35 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 36 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 2.01 7.84 -52.49 -0.41 1.60 16 38 H 0.04 0.76 6.33 -51.93 -0.33 0.43 16 39 H 0.04 0.85 6.43 -51.93 -0.33 0.52 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.11 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 45 H 0.06 0.64 8.13 -51.92 -0.42 0.22 16 46 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 47 H 0.13 1.70 6.29 -52.48 -0.33 1.37 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -33.02 400.18 -7.68 -40.70 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.75 Total: 7.28 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.94 Total: -0.91 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.48 Total: -36.74 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.83 Total: -31.49 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.13 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.02 -7.68 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108809081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.012 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds