Wall clock time and date at job start Wed Apr 1 2020 05:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47221 * 2 1 4 4 C 1.35975 * 116.99843 * 180.02562 * 3 2 1 5 5 C 1.38724 * 119.98034 * 179.97438 * 4 3 2 6 6 C 1.38089 * 120.00836 * 180.02562 * 5 4 3 7 7 C 1.38845 * 119.98830 * 359.97438 * 6 5 4 8 8 N 1.40113 * 120.01529 * 179.97438 * 7 6 5 9 9 C 1.46504 * 119.99981 * 302.85857 * 8 7 6 10 10 C 1.50699 * 109.46971 * 270.00127 * 9 8 7 11 11 H 1.07997 * 120.00286 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00111 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00235 * 179.97438 * 12 10 9 14 14 Si 1.86808 * 119.99894 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47098 * 89.99526 * 14 12 10 16 16 H 1.48507 * 109.46778 * 330.00220 * 14 12 10 17 17 H 1.48498 * 109.47163 * 210.00049 * 14 12 10 18 18 C 1.34771 * 120.00380 * 122.85799 * 8 7 6 19 19 O 1.21298 * 119.99510 * 354.31815 * 18 8 7 20 20 C 1.50690 * 120.00497 * 174.31629 * 18 8 7 21 21 H 1.09002 * 115.55162 * 325.67072 * 20 18 8 22 22 C 1.53001 * 117.49809 * 111.37964 * 20 18 8 23 23 C 1.52998 * 60.00338 * 107.49229 * 22 20 18 24 24 H 1.08998 * 117.50100 * 252.51300 * 23 22 20 25 25 C 1.50699 * 117.52038 * 107.47928 * 23 22 20 26 26 O 1.20830 * 120.00122 * 291.37524 * 25 23 22 27 27 O 1.34226 * 119.99967 * 111.37180 * 25 23 22 28 28 C 1.45199 * 117.00208 * 179.97438 * 27 25 23 29 29 C 1.38848 * 119.96879 * 0.25851 * 7 6 5 30 30 C 1.38086 * 119.98335 * 359.50924 * 29 7 6 31 31 H 1.09008 * 109.46964 * 60.00206 * 1 2 3 32 32 H 1.09002 * 109.47278 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47789 * 300.00357 * 1 2 3 34 34 H 1.08998 * 109.47264 * 239.99649 * 2 1 3 35 35 H 1.09004 * 109.46538 * 119.99970 * 2 1 3 36 36 H 1.07997 * 119.99756 * 0.02562 * 5 4 3 37 37 H 1.08001 * 120.00319 * 179.97438 * 6 5 4 38 38 H 1.08992 * 109.46905 * 149.99791 * 9 8 7 39 39 H 1.09000 * 109.47044 * 30.00062 * 9 8 7 40 40 H 0.97003 * 119.99696 * 179.97438 * 13 12 10 41 41 H 1.09003 * 117.49912 * 214.98677 * 22 20 18 42 42 H 1.08995 * 117.50178 * 359.97438 * 22 20 18 43 43 H 1.09000 * 109.47440 * 179.97438 * 28 27 25 44 44 H 1.08997 * 109.47482 * 300.00590 * 28 27 25 45 45 H 1.09008 * 109.46921 * 60.00438 * 28 27 25 46 46 H 1.08003 * 120.00625 * 179.74689 * 29 7 6 47 47 H 1.08004 * 119.98855 * 180.21598 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 3.8842 2.8074 -0.0011 6 6 5.2531 2.9890 -0.0022 7 6 6.0992 1.8880 -0.0022 8 7 7.4882 2.0716 -0.0038 9 6 8.1231 2.8491 -1.0709 10 6 8.4963 1.9318 -2.2069 11 1 8.2824 0.8753 -2.1404 12 6 9.1118 2.4412 -3.3306 13 7 9.4379 1.6406 -4.3217 14 14 9.4825 4.2685 -3.4453 15 1 10.8328 4.5356 -2.8881 16 1 8.4685 5.0288 -2.6712 17 1 9.4407 4.6938 -4.8675 18 6 8.2404 1.5329 0.9762 19 8 7.7075 0.9778 1.9139 20 6 9.7431 1.6202 0.9071 21 1 10.1716 1.5686 -0.0938 22 6 10.4469 2.5118 1.9321 23 6 10.5408 0.9893 2.0503 24 1 9.9785 0.5111 2.8523 25 6 11.8585 0.3442 1.7062 26 8 12.2481 0.3388 0.5624 27 8 12.5994 -0.2244 2.6702 28 6 13.8570 -0.8273 2.2660 29 6 5.5681 0.6052 -0.0065 30 6 4.1990 0.4250 -0.0006 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5139 0.8900 36 1 3.2260 3.6637 -0.0007 37 1 5.6655 3.9871 -0.0031 38 1 9.0204 3.3320 -0.6840 39 1 7.4282 3.6082 -1.4301 40 1 9.8706 1.9991 -5.1124 41 1 11.3384 3.0473 1.6055 42 1 9.8229 3.0357 2.6561 43 1 14.3550 -1.2489 3.1391 44 1 13.6645 -1.6173 1.5402 45 1 14.4958 -0.0677 1.8154 46 1 6.2256 -0.2516 -0.0106 47 1 3.7859 -0.5729 -0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108809081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:22 Heat of formation + Delta-G solvation = -114.944135 kcal Electronic energy + Delta-G solvation = -30355.311219 eV Core-core repulsion = 26083.354242 eV Total energy + Delta-G solvation = -4271.956977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.04267 -41.46517 -40.65987 -38.81519 -37.85184 -36.77524 -36.58394 -34.55261 -32.77313 -31.93329 -30.66109 -29.43820 -28.98588 -26.31541 -25.21523 -25.07512 -24.20751 -23.35513 -22.38336 -21.56689 -20.15137 -19.35867 -19.18798 -19.08775 -18.28118 -17.81546 -17.43680 -17.37812 -17.03148 -16.91779 -16.27447 -15.86412 -15.66264 -15.44965 -14.98712 -14.62708 -14.58217 -14.45219 -14.32951 -14.26417 -13.92353 -13.83553 -13.51832 -13.49280 -13.21485 -12.97889 -12.97777 -12.92392 -12.60514 -12.49660 -12.14091 -11.95513 -11.86015 -11.80980 -11.76075 -11.72662 -11.63218 -11.58818 -10.96842 -10.78862 -10.09659 -10.00354 -8.78294 -8.30669 -6.39072 0.29891 0.34549 0.88151 1.33623 1.39225 1.40991 1.50470 1.57340 2.08233 2.27560 2.34057 2.64279 2.74507 3.03765 3.39678 3.48618 3.68022 3.78592 3.87402 3.94630 4.06945 4.15601 4.18819 4.27287 4.28961 4.29893 4.36470 4.38978 4.50102 4.55541 4.60454 4.67189 4.75786 4.83718 4.85390 4.93049 4.96005 4.96634 5.05948 5.20192 5.23946 5.32620 5.36851 5.44956 5.56946 5.88010 6.12365 6.42278 6.44953 6.62683 6.65303 7.11406 7.26836 8.86086 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.003366 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.925216 B = 8316.853972 C =10446.034304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.323 6.323 4 C 0.115 3.885 5 C -0.136 4.136 6 C -0.091 4.091 7 C 0.103 3.897 8 N -0.545 5.545 9 C 0.218 3.782 10 C -0.541 4.541 11 H 0.023 0.977 12 C 0.018 3.982 13 N -0.943 5.943 14 Si 0.940 3.060 15 H -0.260 1.260 16 H -0.230 1.230 17 H -0.285 1.285 18 C 0.551 3.449 19 O -0.568 6.568 20 C -0.173 4.173 21 H 0.125 0.875 22 C -0.083 4.083 23 C -0.138 4.138 24 H 0.154 0.846 25 C 0.494 3.506 26 O -0.533 6.533 27 O -0.353 6.353 28 C 0.026 3.974 29 C -0.090 4.090 30 C -0.194 4.194 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.268 0.732 41 H 0.130 0.870 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 1.869 14.445 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 O -0.238 6.238 4 C 0.069 3.931 5 C -0.155 4.155 6 C -0.111 4.111 7 C 0.012 3.988 8 N -0.270 5.270 9 C 0.098 3.902 10 C -0.580 4.580 11 H 0.042 0.958 12 C -0.181 4.181 13 N -0.583 5.583 14 Si 0.762 3.238 15 H -0.185 1.185 16 H -0.153 1.153 17 H -0.211 1.211 18 C 0.341 3.659 19 O -0.449 6.449 20 C -0.194 4.194 21 H 0.143 0.857 22 C -0.120 4.120 23 C -0.157 4.157 24 H 0.172 0.828 25 C 0.338 3.662 26 O -0.423 6.423 27 O -0.269 6.269 28 C -0.066 4.066 29 C -0.110 4.110 30 C -0.213 4.213 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.855 1.692 14.415 15.650 hybrid contribution 0.885 -0.549 -1.233 1.614 sum -4.970 1.143 13.182 14.134 Atomic orbital electron populations 1.21787 0.90868 1.04184 1.03403 1.23079 0.97288 0.80997 1.01988 1.86049 1.17975 1.31003 1.88760 1.19010 0.82719 0.94069 0.97263 1.20482 0.94166 0.95652 1.05224 1.21106 0.92436 0.98508 0.99034 1.17826 0.83094 0.93964 1.03888 1.45429 1.04443 1.52110 1.25034 1.19814 0.94519 0.91248 0.84638 1.21421 1.40003 0.94686 1.01871 0.95832 1.25835 0.94300 1.03440 0.94508 1.70067 1.42194 1.38045 1.07948 0.85829 0.80599 0.79033 0.78367 1.18494 1.15261 1.21095 1.19700 0.88277 0.76999 0.80909 1.90618 1.74704 1.45141 1.34389 1.22221 0.90694 1.08308 0.98162 0.85682 1.23304 1.02319 0.88575 0.97847 1.21676 0.92302 0.99225 1.02530 0.82834 1.22727 0.85475 0.75074 0.82918 1.90741 1.72018 1.56613 1.22920 1.86467 1.34141 1.67056 1.39220 1.23626 0.81343 0.97818 1.03856 1.20921 0.95361 0.96085 0.98653 1.21179 0.92569 0.99415 1.08108 0.91709 0.88284 0.91421 0.91802 0.91383 0.82295 0.83296 0.92517 0.92926 0.92319 0.85196 0.84154 0.84156 0.92548 0.91667 0.88155 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.04 0.81 5.46 71.98 0.39 1.20 16 3 O -0.32 -8.54 10.14 -93.27 -0.95 -9.48 16 4 C 0.11 3.50 6.69 22.50 0.15 3.65 16 5 C -0.14 -4.01 9.98 22.35 0.22 -3.79 16 6 C -0.09 -3.03 9.32 22.38 0.21 -2.82 16 7 C 0.10 4.14 5.14 38.11 0.20 4.34 16 8 N -0.55 -23.03 2.56 -635.18 -1.63 -24.66 16 9 C 0.22 9.60 3.78 85.63 0.32 9.92 16 10 C -0.54 -30.01 9.38 25.60 0.24 -29.77 16 11 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 12 C 0.02 1.00 5.47 84.65 0.46 1.47 16 13 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 14 Si 0.94 40.50 27.47 68.60 1.88 42.38 16 15 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 16 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 17 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 18 C 0.55 22.61 7.24 87.65 0.63 23.24 16 19 O -0.57 -24.59 15.67 -3.08 -0.05 -24.64 16 20 C -0.17 -6.34 4.23 -11.54 -0.05 -6.39 16 21 H 0.13 5.52 6.55 -2.39 -0.02 5.51 16 22 C -0.08 -2.13 9.94 30.59 0.30 -1.82 16 23 C -0.14 -4.21 5.81 -11.54 -0.07 -4.28 16 24 H 0.15 4.44 7.67 -2.39 -0.02 4.42 16 25 C 0.49 16.01 7.74 71.24 0.55 16.56 16 26 O -0.53 -21.47 16.01 21.95 0.35 -21.12 16 27 O -0.35 -9.31 10.56 -51.37 -0.54 -9.86 16 28 C 0.03 0.52 10.56 113.37 1.20 1.72 16 29 C -0.09 -3.58 8.99 22.38 0.20 -3.38 16 30 C -0.19 -6.31 9.03 22.35 0.20 -6.11 16 31 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 35 H 0.07 1.23 7.66 -2.39 -0.02 1.22 16 36 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.15 4.25 7.84 -2.91 -0.02 4.23 16 38 H 0.06 2.28 6.33 -2.39 -0.02 2.27 16 39 H 0.05 2.18 6.43 -2.39 -0.02 2.17 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 45 H 0.06 1.27 8.13 -2.38 -0.02 1.25 16 46 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 47 H 0.15 3.96 6.29 -2.91 -0.02 3.94 16 Total: -1.00 -77.16 400.18 6.21 -70.95 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.93 Total: 31.80 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.91 Total: 2.45 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -1.33 Total: -82.48 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -1.19 Total: -65.10 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.88 Total: 42.38 kcal Total: -77.16 6.21 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108809081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.994 kcal (2) G-P(sol) polarization free energy of solvation -77.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds