Wall clock time and date at job start Wed Apr 1 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47731 * 2 1 4 4 C 1.50710 * 109.47073 * 239.99681 * 2 1 3 5 5 O 1.21280 * 120.00164 * 251.47930 * 4 2 1 6 6 N 1.34780 * 119.99552 * 71.47912 * 4 2 1 7 7 C 1.46506 * 119.99987 * 4.95809 * 6 4 2 8 8 C 1.46491 * 120.00004 * 184.96355 * 6 4 2 9 9 C 1.50700 * 109.47276 * 89.99505 * 8 6 4 10 10 N 1.27929 * 124.23524 * 89.70524 * 9 8 6 11 11 C 1.34668 * 117.84426 * 179.81398 * 10 9 8 12 12 C 1.40973 * 129.68729 * 180.17774 * 11 10 9 13 13 C 1.36179 * 120.42375 * 180.33710 * 12 11 10 14 14 C 1.38786 * 120.77910 * 359.95445 * 13 12 11 15 15 C 1.37659 * 120.06836 * 0.02562 * 14 13 12 16 16 C 1.39333 * 119.95162 * 0.02562 * 15 14 13 17 17 S 1.70650 * 124.24080 * 270.00036 * 9 8 6 18 18 N 1.46898 * 109.46922 * 120.00327 * 2 1 3 19 19 C 1.46904 * 111.00200 * 58.95010 * 18 2 1 20 20 C 1.46897 * 111.00149 * 294.99457 * 18 2 1 21 21 C 1.50697 * 109.47376 * 189.99931 * 20 18 2 22 22 H 1.07999 * 120.00282 * 0.02562 * 21 20 18 23 23 C 1.37885 * 119.99710 * 180.02562 * 21 20 18 24 24 N 1.31508 * 120.00405 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99665 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47178 * 119.99720 * 25 23 21 28 28 H 1.48493 * 109.47029 * 240.00094 * 25 23 21 29 29 H 1.08995 * 109.46756 * 307.76673 * 1 2 3 30 30 H 1.08997 * 109.47233 * 187.76691 * 1 2 3 31 31 H 1.09006 * 109.46740 * 67.76305 * 1 2 3 32 32 H 1.09000 * 109.46772 * 95.03863 * 7 6 4 33 33 H 1.08998 * 109.46937 * 215.03687 * 7 6 4 34 34 H 1.09000 * 109.46917 * 335.03805 * 7 6 4 35 35 H 1.08996 * 109.47685 * 209.99657 * 8 6 4 36 36 H 1.09003 * 109.46967 * 330.00057 * 8 6 4 37 37 H 1.08002 * 119.78626 * 0.31176 * 12 11 10 38 38 H 1.07996 * 119.60757 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.96890 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.02283 * 179.97438 * 15 14 13 41 41 H 1.09004 * 109.47044 * 60.00468 * 19 18 2 42 42 H 1.08998 * 109.46950 * 180.02562 * 19 18 2 43 43 H 1.08993 * 109.46974 * 299.99896 * 19 18 2 44 44 H 1.09001 * 109.47107 * 310.00331 * 20 18 2 45 45 H 1.09007 * 109.47060 * 70.00197 * 20 18 2 46 46 H 0.96998 * 120.00139 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.5490 -1.8033 -1.1313 6 7 1.9074 -0.1315 -2.4411 7 6 1.3833 1.2323 -2.5503 8 6 2.2954 -0.8658 -3.6479 9 6 1.1092 -1.6334 -4.1721 10 7 0.2646 -1.1674 -5.0123 11 6 -0.7472 -1.9684 -5.3971 12 6 -1.8012 -1.7172 -6.2990 13 6 -2.7386 -2.6732 -6.5476 14 6 -2.6752 -3.9101 -5.9212 15 6 -1.6569 -4.1835 -5.0361 16 6 -0.6895 -3.2171 -4.7686 17 16 0.7204 -3.2306 -3.7138 18 7 2.0196 -0.6926 1.1994 19 6 1.5282 -2.0762 1.2459 20 6 1.6488 0.0391 2.4180 21 6 2.3679 -0.5573 3.6005 22 1 3.0342 -1.3957 3.4607 23 6 2.1752 -0.0325 4.8609 24 7 1.3635 0.9881 5.0313 25 14 3.0671 -0.7713 6.3265 26 1 3.9149 -1.9025 5.8714 27 1 3.9218 0.2649 6.9597 28 1 2.0734 -1.2642 7.3137 29 1 -0.3633 0.6294 0.8124 30 1 -0.3633 -1.0182 0.1389 31 1 -0.3633 0.3889 -0.9513 32 1 2.2129 1.9383 -2.5875 33 1 0.7892 1.3215 -3.4598 34 1 0.7580 1.4515 -1.6848 35 1 2.6373 -0.1625 -4.4071 36 1 3.1002 -1.5605 -3.4074 37 1 -1.8659 -0.7604 -6.7956 38 1 -3.5407 -2.4666 -7.2406 39 1 -3.4254 -4.6589 -6.1284 40 1 -1.6085 -5.1460 -4.5487 41 1 1.8762 -2.6152 0.3647 42 1 1.9051 -2.5656 2.1439 43 1 0.4384 -2.0742 1.2639 44 1 1.9298 1.0869 2.3125 45 1 0.5722 -0.0346 2.5726 46 1 1.2282 1.3574 5.9179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177187424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:12 Heat of formation + Delta-G solvation = 52.237696 kcal Electronic energy + Delta-G solvation = -28052.037081 eV Core-core repulsion = 24262.375274 eV Total energy + Delta-G solvation = -3789.661807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.68133 -40.08521 -37.51087 -36.49210 -35.44104 -32.74790 -31.43073 -31.37845 -29.92141 -28.11899 -27.03355 -26.54539 -25.20220 -24.42480 -23.45170 -22.67361 -21.39181 -20.24049 -18.78669 -18.71728 -17.14883 -16.69899 -16.52108 -16.20161 -15.94242 -15.58547 -15.03954 -14.81795 -14.66615 -14.36826 -14.22785 -13.88726 -13.78362 -13.31951 -12.97244 -12.88927 -12.78632 -12.57234 -12.47570 -12.26222 -12.09380 -11.97400 -11.70286 -11.37083 -11.06967 -11.05181 -11.00646 -10.78165 -10.61998 -10.39396 -10.37818 -9.95822 -9.92533 -9.29742 -9.06051 -8.87927 -8.74846 -8.41756 -8.35762 -7.17133 -6.01514 -4.01505 0.11410 0.83909 1.05793 1.58278 1.99642 2.78100 2.99589 3.32995 3.40266 3.41829 3.46666 3.62135 4.31119 4.44456 4.54881 4.61973 4.69936 4.89701 4.98208 5.00748 5.07057 5.11820 5.18710 5.34157 5.34753 5.39594 5.49155 5.50430 5.54524 5.63419 5.83209 5.88855 5.94517 6.04072 6.05301 6.25681 6.32163 6.37145 6.53534 6.62779 7.02159 7.26191 7.32045 7.35880 7.38757 7.83228 8.07523 8.21493 8.36647 8.56764 9.06949 9.62422 11.09590 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.002441 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.493377 B =11467.859499 C =11799.991296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.067 3.933 3 H 0.099 0.901 4 C 0.526 3.474 5 O -0.511 6.511 6 N -0.617 5.617 7 C 0.070 3.930 8 C 0.187 3.813 9 C 0.073 3.927 10 N -0.462 5.462 11 C 0.080 3.920 12 C -0.065 4.065 13 C -0.109 4.109 14 C -0.105 4.105 15 C -0.070 4.070 16 C -0.194 4.194 17 S 0.144 5.856 18 N -0.518 5.518 19 C 0.016 3.984 20 C 0.193 3.807 21 C -0.503 4.503 22 H 0.065 0.935 23 C 0.054 3.946 24 N -0.900 5.900 25 Si 0.897 3.103 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.285 1.285 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.007 0.993 44 H 0.028 0.972 45 H -0.005 1.005 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 -4.754 -25.563 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.045 4.045 3 H 0.117 0.883 4 C 0.315 3.685 5 O -0.384 6.384 6 N -0.353 5.353 7 C -0.073 4.073 8 C 0.060 3.940 9 C -0.212 4.212 10 N -0.176 5.176 11 C -0.041 4.041 12 C -0.085 4.085 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.093 4.093 16 C -0.313 4.313 17 S 0.402 5.598 18 N -0.242 5.242 19 C -0.132 4.132 20 C 0.068 3.932 21 C -0.541 4.541 22 H 0.083 0.917 23 C -0.147 4.147 24 N -0.540 5.540 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.210 1.210 28 H -0.212 1.212 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.046 0.954 45 H 0.013 0.987 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.633 -5.375 -24.817 26.010 hybrid contribution -1.314 0.172 0.325 1.364 sum -6.947 -5.203 -24.492 25.984 Atomic orbital electron populations 1.22498 0.96118 1.03504 1.02300 1.21617 0.93577 0.98968 0.90386 0.88303 1.21116 0.77455 0.85992 0.83936 1.90550 1.41969 1.20775 1.85143 1.47915 1.66355 1.15968 1.05019 1.22051 0.99591 0.81784 1.03890 1.19970 0.90446 0.95909 0.87628 1.27358 1.00544 0.96633 0.96691 1.66216 1.03094 1.34666 1.13658 1.19214 0.95872 0.89071 0.99908 1.20381 0.91945 1.00129 0.96093 1.20720 0.98825 0.93341 1.00168 1.21139 0.97832 0.97344 0.96405 1.20382 0.92887 0.97835 0.98164 1.24140 1.02799 1.00072 1.04274 1.84548 1.19309 1.13859 1.42110 1.62188 1.58315 1.02532 1.01148 1.22704 0.96063 0.90741 1.03721 1.19784 0.94597 0.93705 0.85115 1.21203 1.25927 1.16032 0.90979 0.91704 1.24977 0.95544 0.95166 0.98988 1.69960 1.37063 1.24289 1.22724 0.86441 0.79495 0.79176 0.82339 1.19606 1.21033 1.21161 0.90575 0.91675 0.92548 0.92008 0.90931 0.89726 0.87320 0.87105 0.84928 0.84865 0.84824 0.85180 0.89707 0.91194 0.97482 0.95402 0.98710 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.00 8.05 37.16 0.30 -2.70 16 2 C 0.07 1.20 1.91 -68.86 -0.13 1.07 16 3 H 0.10 1.67 7.30 -51.93 -0.38 1.29 16 4 C 0.53 8.63 6.80 -10.98 -0.07 8.55 16 5 O -0.51 -9.61 13.05 5.56 0.07 -9.54 16 6 N -0.62 -7.84 2.86 -182.95 -0.52 -8.37 16 7 C 0.07 0.70 9.81 59.85 0.59 1.29 16 8 C 0.19 2.10 6.02 -5.20 -0.03 2.07 16 9 C 0.07 0.91 6.87 -13.90 -0.10 0.81 16 10 N -0.46 -5.91 10.57 -9.08 -0.10 -6.00 16 11 C 0.08 0.98 7.00 -84.96 -0.59 0.39 16 12 C -0.06 -0.61 10.05 -39.29 -0.39 -1.01 16 13 C -0.11 -0.81 9.94 -40.12 -0.40 -1.21 16 14 C -0.11 -0.79 10.04 -39.59 -0.40 -1.18 16 15 C -0.07 -0.66 10.07 -39.39 -0.40 -1.06 16 16 C -0.19 -2.30 6.56 -38.55 -0.25 -2.55 16 17 S 0.14 1.81 23.11 -107.50 -2.48 -0.68 16 18 N -0.52 -11.60 4.61 -237.73 -1.10 -12.69 16 19 C 0.02 0.33 8.60 60.07 0.52 0.85 16 20 C 0.19 5.00 4.17 -4.98 -0.02 4.98 16 21 C -0.50 -14.32 8.46 -34.44 -0.29 -14.61 16 22 H 0.06 1.87 7.12 -52.49 -0.37 1.49 16 23 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 24 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 25 Si 0.90 21.94 29.54 -169.99 -5.02 16.91 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.08 1.31 7.16 -51.93 -0.37 0.94 16 30 H 0.06 1.13 5.99 -51.93 -0.31 0.81 16 31 H 0.06 0.76 6.03 -51.93 -0.31 0.45 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.08 0.88 4.45 -51.93 -0.23 0.65 16 35 H 0.11 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.11 1.27 7.36 -51.93 -0.38 0.89 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.08 1.77 5.06 -51.93 -0.26 1.51 16 42 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 43 H 0.01 0.14 6.12 -51.93 -0.32 -0.18 16 44 H 0.03 0.76 8.00 -51.93 -0.42 0.34 16 45 H 0.00 -0.13 7.12 -51.93 -0.37 -0.50 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -33.62 381.48 -10.60 -44.22 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.17 Total: -0.79 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.77 Total: -2.86 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.98 Total: -53.01 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.48 Total: -0.68 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.62 -10.60 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177187424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.458 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds