Wall clock time and date at job start Wed Apr 1 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47731 * 2 1 4 4 C 1.50710 * 109.47073 * 239.99681 * 2 1 3 5 5 O 1.21280 * 120.00164 * 251.47930 * 4 2 1 6 6 N 1.34780 * 119.99552 * 71.47912 * 4 2 1 7 7 C 1.46506 * 119.99987 * 4.95809 * 6 4 2 8 8 C 1.46491 * 120.00004 * 184.96355 * 6 4 2 9 9 C 1.50700 * 109.47276 * 89.99505 * 8 6 4 10 10 N 1.27929 * 124.23524 * 89.70524 * 9 8 6 11 11 C 1.34668 * 117.84426 * 179.81398 * 10 9 8 12 12 C 1.40973 * 129.68729 * 180.17774 * 11 10 9 13 13 C 1.36179 * 120.42375 * 180.33710 * 12 11 10 14 14 C 1.38786 * 120.77910 * 359.95445 * 13 12 11 15 15 C 1.37659 * 120.06836 * 0.02562 * 14 13 12 16 16 C 1.39333 * 119.95162 * 0.02562 * 15 14 13 17 17 S 1.70650 * 124.24080 * 270.00036 * 9 8 6 18 18 N 1.46898 * 109.46922 * 120.00327 * 2 1 3 19 19 C 1.46904 * 111.00200 * 58.95010 * 18 2 1 20 20 C 1.46897 * 111.00149 * 294.99457 * 18 2 1 21 21 C 1.50697 * 109.47376 * 189.99931 * 20 18 2 22 22 H 1.07999 * 120.00282 * 0.02562 * 21 20 18 23 23 C 1.37885 * 119.99710 * 180.02562 * 21 20 18 24 24 N 1.31508 * 120.00405 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99665 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47178 * 119.99720 * 25 23 21 28 28 H 1.48493 * 109.47029 * 240.00094 * 25 23 21 29 29 H 1.08995 * 109.46756 * 307.76673 * 1 2 3 30 30 H 1.08997 * 109.47233 * 187.76691 * 1 2 3 31 31 H 1.09006 * 109.46740 * 67.76305 * 1 2 3 32 32 H 1.09000 * 109.46772 * 95.03863 * 7 6 4 33 33 H 1.08998 * 109.46937 * 215.03687 * 7 6 4 34 34 H 1.09000 * 109.46917 * 335.03805 * 7 6 4 35 35 H 1.08996 * 109.47685 * 209.99657 * 8 6 4 36 36 H 1.09003 * 109.46967 * 330.00057 * 8 6 4 37 37 H 1.08002 * 119.78626 * 0.31176 * 12 11 10 38 38 H 1.07996 * 119.60757 * 179.97438 * 13 12 11 39 39 H 1.08001 * 119.96890 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.02283 * 179.97438 * 15 14 13 41 41 H 1.09004 * 109.47044 * 60.00468 * 19 18 2 42 42 H 1.08998 * 109.46950 * 180.02562 * 19 18 2 43 43 H 1.08993 * 109.46974 * 299.99896 * 19 18 2 44 44 H 1.09001 * 109.47107 * 310.00331 * 20 18 2 45 45 H 1.09007 * 109.47060 * 70.00197 * 20 18 2 46 46 H 0.96998 * 120.00139 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.5490 -1.8033 -1.1313 6 7 1.9074 -0.1315 -2.4411 7 6 1.3833 1.2323 -2.5503 8 6 2.2954 -0.8658 -3.6479 9 6 1.1092 -1.6334 -4.1721 10 7 0.2646 -1.1674 -5.0123 11 6 -0.7472 -1.9684 -5.3971 12 6 -1.8012 -1.7172 -6.2990 13 6 -2.7386 -2.6732 -6.5476 14 6 -2.6752 -3.9101 -5.9212 15 6 -1.6569 -4.1835 -5.0361 16 6 -0.6895 -3.2171 -4.7686 17 16 0.7204 -3.2306 -3.7138 18 7 2.0196 -0.6926 1.1994 19 6 1.5282 -2.0762 1.2459 20 6 1.6488 0.0391 2.4180 21 6 2.3679 -0.5573 3.6005 22 1 3.0342 -1.3957 3.4607 23 6 2.1752 -0.0325 4.8609 24 7 1.3635 0.9881 5.0313 25 14 3.0671 -0.7713 6.3265 26 1 3.9149 -1.9025 5.8714 27 1 3.9218 0.2649 6.9597 28 1 2.0734 -1.2642 7.3137 29 1 -0.3633 0.6294 0.8124 30 1 -0.3633 -1.0182 0.1389 31 1 -0.3633 0.3889 -0.9513 32 1 2.2129 1.9383 -2.5875 33 1 0.7892 1.3215 -3.4598 34 1 0.7580 1.4515 -1.6848 35 1 2.6373 -0.1625 -4.4071 36 1 3.1002 -1.5605 -3.4074 37 1 -1.8659 -0.7604 -6.7956 38 1 -3.5407 -2.4666 -7.2406 39 1 -3.4254 -4.6589 -6.1284 40 1 -1.6085 -5.1460 -4.5487 41 1 1.8762 -2.6152 0.3647 42 1 1.9051 -2.5656 2.1439 43 1 0.4384 -2.0742 1.2639 44 1 1.9298 1.0869 2.3125 45 1 0.5722 -0.0346 2.5726 46 1 1.2282 1.3574 5.9179 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177187424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:11 Heat of formation + Delta-G solvation = 30.376822 kcal Electronic energy + Delta-G solvation = -28052.985040 eV Core-core repulsion = 24262.375274 eV Total energy + Delta-G solvation = -3790.609766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63690 -41.20509 -38.57303 -37.83678 -36.58283 -34.82536 -32.60248 -32.10503 -31.15353 -29.12986 -28.90661 -27.64125 -26.84177 -25.53247 -24.77436 -23.56932 -22.48874 -21.63496 -19.99721 -19.59258 -18.56702 -18.29166 -17.57872 -17.30737 -16.99874 -16.57668 -16.37964 -16.16590 -15.95292 -15.57610 -15.47647 -15.10655 -14.91894 -14.63802 -14.37145 -14.21613 -13.99245 -13.61300 -13.52068 -13.34576 -13.28013 -12.95493 -12.85895 -12.81584 -12.70366 -12.65001 -12.53252 -12.38096 -12.10272 -11.99990 -11.82559 -11.34628 -11.17242 -10.84811 -10.61173 -10.46211 -9.89287 -9.68097 -9.16808 -8.97369 -8.20583 -6.28947 -0.68960 0.14462 0.20944 0.72117 1.17275 1.40065 1.40779 1.51324 1.54711 1.94737 2.41120 2.69002 2.78168 3.11979 3.33139 3.49050 3.57256 3.85807 4.02368 4.05061 4.06944 4.14813 4.18956 4.27366 4.33279 4.42269 4.53546 4.54446 4.64334 4.65502 4.69508 4.78331 4.89642 4.91396 5.06443 5.12469 5.16841 5.24404 5.25463 5.30700 5.39593 5.43822 5.65391 5.75635 6.01754 6.17430 6.30561 6.48133 6.60750 6.85980 7.10533 7.39965 8.90411 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.002441 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.493377 B =11467.859499 C =11799.991296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 H 0.109 0.891 4 C 0.529 3.471 5 O -0.541 6.541 6 N -0.607 5.607 7 C 0.065 3.935 8 C 0.189 3.811 9 C 0.067 3.933 10 N -0.465 5.465 11 C 0.047 3.953 12 C -0.074 4.074 13 C -0.101 4.101 14 C -0.091 4.091 15 C -0.089 4.089 16 C -0.205 4.205 17 S 0.102 5.898 18 N -0.532 5.532 19 C 0.027 3.973 20 C 0.212 3.788 21 C -0.524 4.524 22 H 0.055 0.945 23 C 0.005 3.995 24 N -0.930 5.930 25 Si 0.965 3.035 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.277 1.277 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.010 0.990 44 H 0.010 0.990 45 H -0.026 1.026 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -4.739 -27.512 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.049 4.049 3 H 0.126 0.874 4 C 0.317 3.683 5 O -0.418 6.418 6 N -0.341 5.341 7 C -0.076 4.076 8 C 0.063 3.937 9 C -0.219 4.219 10 N -0.180 5.180 11 C -0.073 4.073 12 C -0.095 4.095 13 C -0.122 4.122 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.323 4.323 17 S 0.359 5.641 18 N -0.256 5.256 19 C -0.121 4.121 20 C 0.086 3.914 21 C -0.562 4.562 22 H 0.074 0.926 23 C -0.193 4.193 24 N -0.571 5.571 25 Si 0.790 3.210 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.203 1.203 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.164 0.836 38 H 0.188 0.812 39 H 0.187 0.813 40 H 0.160 0.840 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.028 0.972 45 H -0.008 1.008 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.839 -5.332 -26.819 28.186 hybrid contribution -1.085 0.172 0.741 1.325 sum -7.923 -5.160 -26.079 27.740 Atomic orbital electron populations 1.22356 0.94828 1.02528 1.03411 1.21698 0.94661 0.99156 0.89413 0.87364 1.20716 0.77449 0.85518 0.84603 1.90527 1.43593 1.21946 1.85698 1.47837 1.65196 1.16778 1.04297 1.22246 1.00556 0.80504 1.04324 1.20122 0.89991 0.96311 0.87323 1.27362 1.00984 0.96357 0.97218 1.66193 1.03307 1.35007 1.13487 1.19631 0.96849 0.89389 1.01403 1.20725 0.91645 1.01467 0.95701 1.21200 0.98714 0.92527 0.99716 1.21632 0.97214 0.98067 0.94387 1.20738 0.93139 0.98088 0.99176 1.24295 1.02892 1.00855 1.04308 1.84587 1.20970 1.15054 1.43504 1.62031 1.59195 1.02812 1.01518 1.22578 0.96081 0.90387 1.03020 1.19400 0.92833 0.92861 0.86329 1.21473 1.26243 1.16093 0.92419 0.92645 1.25820 0.96204 0.95480 1.01801 1.70059 1.38065 1.25292 1.23678 0.85390 0.78418 0.78492 0.78665 1.19324 1.20104 1.20292 0.91957 0.92981 0.89488 0.89865 0.89573 0.90147 0.84464 0.87690 0.83578 0.81219 0.81319 0.84006 0.88800 0.93321 0.97202 0.97177 1.00845 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 8.05 71.98 0.58 -5.04 16 2 C 0.06 2.26 1.91 44.17 0.08 2.35 16 3 H 0.11 3.65 7.30 -2.39 -0.02 3.63 16 4 C 0.53 17.32 6.80 87.66 0.60 17.92 16 5 O -0.54 -20.73 13.05 -3.03 -0.04 -20.77 16 6 N -0.61 -14.82 2.86 -851.12 -2.43 -17.26 16 7 C 0.07 1.18 9.81 127.77 1.25 2.43 16 8 C 0.19 4.08 6.02 85.63 0.52 4.60 16 9 C 0.07 1.64 6.87 88.68 0.61 2.25 16 10 N -0.47 -11.55 10.57 -182.51 -1.93 -13.48 16 11 C 0.05 1.11 7.00 39.78 0.28 1.39 16 12 C -0.07 -1.25 10.05 22.46 0.23 -1.02 16 13 C -0.10 -1.14 9.94 21.92 0.22 -0.92 16 14 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 15 C -0.09 -1.54 10.07 22.40 0.23 -1.32 16 16 C -0.20 -4.78 6.56 22.94 0.15 -4.63 16 17 S 0.10 2.63 23.11 -56.49 -1.31 1.33 16 18 N -0.53 -24.50 4.61 -906.03 -4.18 -28.68 16 19 C 0.03 1.21 8.60 127.69 1.10 2.31 16 20 C 0.21 11.37 4.17 85.56 0.36 11.72 16 21 C -0.52 -30.61 8.46 25.60 0.22 -30.39 16 22 H 0.06 3.28 7.12 -2.91 -0.02 3.26 16 23 C 0.01 0.30 5.46 84.66 0.46 0.76 16 24 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 25 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 H 0.06 2.19 7.16 -2.39 -0.02 2.18 16 30 H 0.05 1.83 5.99 -2.39 -0.01 1.81 16 31 H 0.09 2.26 6.03 -2.38 -0.01 2.25 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.37 8.11 -2.39 -0.02 1.35 16 34 H 0.08 1.53 4.45 -2.39 -0.01 1.52 16 35 H 0.14 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.10 2.42 7.36 -2.39 -0.02 2.40 16 37 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 39 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.09 4.05 5.06 -2.38 -0.01 4.04 16 42 H 0.05 2.32 6.76 -2.39 -0.02 2.31 16 43 H 0.01 0.42 6.12 -2.39 -0.01 0.40 16 44 H 0.01 0.57 8.00 -2.39 -0.02 0.55 16 45 H -0.03 -1.49 7.12 -2.38 -0.02 -1.51 16 46 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -74.51 381.48 0.53 -73.98 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.01 Total: 11.51 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 7.09 Total: 1.57 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -8.25 Total: -114.97 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.04 Total: -20.77 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.31 Total: 1.33 kcal Total: -74.51 0.53 -73.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177187424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.356 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds