Wall clock time and date at job start Wed Apr 1 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46978 * 2 1 4 4 C 1.34232 * 116.99821 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00114 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99476 * 180.02562 * 4 3 2 7 7 H 1.09000 * 110.00102 * 301.09039 * 6 4 3 8 8 C 1.54313 * 109.77766 * 62.25166 * 6 4 3 9 9 C 1.55160 * 102.86563 * 141.88228 * 8 6 4 10 10 C 1.54913 * 101.58217 * 324.30581 * 9 8 6 11 11 N 1.47028 * 109.88103 * 180.02562 * 6 4 3 12 12 C 1.34775 * 125.65246 * 61.67098 * 11 6 4 13 13 O 1.21282 * 119.99401 * 359.72795 * 12 11 6 14 14 C 1.50699 * 120.00293 * 179.44212 * 12 11 6 15 15 C 1.50701 * 109.47059 * 180.27709 * 14 12 11 16 16 C 1.38301 * 119.93218 * 269.73346 * 15 14 12 17 17 C 1.38105 * 120.06674 * 179.72959 * 16 15 14 18 18 C 1.38881 * 119.92714 * 0.56496 * 17 16 15 19 19 O 1.35745 * 120.06446 * 179.68818 * 18 17 16 20 20 C 1.34831 * 117.00312 * 174.48531 * 19 18 17 21 21 H 1.08007 * 119.99390 * 5.05163 * 20 19 18 22 22 C 1.38650 * 120.00734 * 185.05737 * 20 19 18 23 23 N 1.31553 * 120.00243 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99649 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47145 * 90.00390 * 24 22 20 26 26 H 1.48507 * 109.47211 * 210.00378 * 24 22 20 27 27 H 1.48497 * 109.47210 * 330.00182 * 24 22 20 28 28 C 1.38874 * 119.86582 * 359.70135 * 18 17 16 29 29 C 1.38096 * 119.93103 * 0.02562 * 28 18 17 30 30 H 1.08995 * 109.47519 * 299.99844 * 1 2 3 31 31 H 1.09003 * 109.46856 * 60.00413 * 1 2 3 32 32 H 1.09001 * 109.46640 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47519 * 240.00156 * 2 1 3 34 34 H 1.09003 * 109.46856 * 119.99587 * 2 1 3 35 35 H 1.08998 * 110.92431 * 23.46740 * 8 6 4 36 36 H 1.09000 * 110.59207 * 260.14372 * 8 6 4 37 37 H 1.08996 * 111.00759 * 206.23250 * 9 8 6 38 38 H 1.08999 * 111.03548 * 82.39220 * 9 8 6 39 39 H 1.09006 * 110.36671 * 278.17250 * 10 9 8 40 40 H 1.08999 * 110.45978 * 155.89579 * 10 9 8 41 41 H 1.09000 * 109.47330 * 300.28221 * 14 12 11 42 42 H 1.09001 * 109.46857 * 60.27918 * 14 12 11 43 43 H 1.07997 * 119.96355 * 359.97339 * 16 15 14 44 44 H 1.07993 * 120.03458 * 180.27097 * 17 16 15 45 45 H 0.97006 * 119.99820 * 180.02562 * 23 22 20 46 46 H 1.08004 * 120.03768 * 179.97438 * 28 18 17 47 47 H 1.08007 * 119.96958 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9374 0.0012 7 1 3.5746 3.4844 -0.8759 8 6 3.4949 3.6779 1.2863 9 6 4.7644 4.4912 1.6531 10 6 5.8914 3.5169 1.2282 11 7 5.3894 2.8711 0.0010 12 6 6.1506 2.3170 -0.9632 13 8 5.6271 1.8118 -1.9336 14 6 7.6524 2.3308 -0.8388 15 6 8.2624 1.6593 -2.0422 16 6 8.5093 0.2987 -2.0220 17 6 9.0630 -0.3205 -3.1254 18 6 9.3828 0.4268 -4.2515 19 8 9.9330 -0.1778 -5.3352 20 6 10.1132 0.5818 -6.4344 21 1 9.9000 1.6401 -6.4002 22 6 10.5719 0.0047 -7.6086 23 7 10.7482 0.7461 -8.6810 24 14 10.9410 -1.8256 -7.6675 25 1 9.7187 -2.5642 -8.0743 26 1 12.0239 -2.0808 -8.6512 27 1 11.3740 -2.2867 -6.3240 28 6 9.1387 1.7938 -4.2665 29 6 8.5796 2.4062 -3.1622 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2471 2.9716 2.0786 36 1 2.6554 4.3434 1.0851 37 1 4.8043 4.6915 2.7237 38 1 4.8136 5.4183 1.0821 39 1 6.0626 2.7726 2.0059 40 1 6.8102 4.0649 1.0196 41 1 8.0028 3.3613 -0.7811 42 1 7.9471 1.7958 0.0641 43 1 8.2652 -0.2809 -1.1440 44 1 9.2515 -1.3837 -3.1107 45 1 11.0688 0.3421 -9.5026 46 1 9.3866 2.3777 -5.1407 47 1 8.3899 3.4694 -3.1731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180989293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:46 Heat of formation + Delta-G solvation = -115.435730 kcal Electronic energy + Delta-G solvation = -30147.362688 eV Core-core repulsion = 25875.384394 eV Total energy + Delta-G solvation = -4271.978295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.14066 -39.73201 -39.00295 -37.65282 -36.60577 -36.44374 -32.62702 -32.31703 -31.93875 -31.18624 -30.16760 -29.99187 -26.87738 -25.08065 -24.64759 -23.31039 -22.13710 -22.02565 -21.56449 -20.41988 -19.20984 -18.17020 -17.81621 -17.30220 -17.18611 -16.86432 -16.51153 -15.98950 -15.16895 -14.85396 -14.62859 -14.44433 -14.28634 -13.91247 -13.80170 -13.66507 -13.64320 -13.45807 -13.22226 -13.06536 -12.67474 -12.59812 -12.45666 -12.36452 -12.14452 -12.01995 -11.83639 -11.78045 -11.58406 -11.39620 -11.23327 -10.86098 -10.75349 -10.69647 -10.60911 -10.55430 -10.09874 -9.73476 -9.31831 -8.93606 -8.80245 -8.15436 -7.23562 -6.35992 -4.02066 2.06575 2.09726 2.24034 2.29990 2.82199 2.96588 3.26366 3.30738 3.45259 3.95461 4.02409 4.29211 4.35109 4.49586 4.57278 4.63719 4.70468 4.71975 4.90002 4.92906 4.98035 4.99020 5.15159 5.17483 5.22561 5.26377 5.29841 5.34733 5.37563 5.43854 5.46804 5.63958 5.64306 5.66401 5.72324 5.84521 5.96188 6.20738 6.25745 6.40947 6.64505 6.87352 7.09682 7.30031 7.32955 7.37749 7.62421 7.69050 7.86982 8.10415 8.26917 8.99691 9.63037 10.71823 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002345 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.627086 B =11937.046967 C =13118.255554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.361 6.361 4 C 0.450 3.550 5 O -0.483 6.483 6 C 0.148 3.852 7 H 0.113 0.887 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.098 3.902 11 N -0.616 5.616 12 C 0.533 3.467 13 O -0.505 6.505 14 C -0.072 4.072 15 C -0.162 4.162 16 C -0.059 4.059 17 C -0.191 4.191 18 C 0.163 3.837 19 O -0.219 6.219 20 C -0.388 4.388 21 H 0.106 0.894 22 C 0.062 3.938 23 N -0.881 5.881 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.220 4.220 29 C -0.058 4.058 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.133 0.867 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 7.694 25.389 31.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.290 3.710 5 O -0.368 6.368 6 C 0.042 3.958 7 H 0.130 0.870 8 C -0.155 4.155 9 C -0.170 4.170 10 C -0.024 4.024 11 N -0.354 5.354 12 C 0.323 3.677 13 O -0.377 6.377 14 C -0.112 4.112 15 C -0.163 4.163 16 C -0.077 4.077 17 C -0.210 4.210 18 C 0.111 3.889 19 O -0.124 6.124 20 C -0.463 4.463 21 H 0.124 0.876 22 C -0.140 4.140 23 N -0.520 5.520 24 Si 0.731 3.269 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.239 4.239 29 C -0.076 4.076 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.677 6.791 24.467 30.379 hybrid contribution 0.085 -0.878 -0.274 0.924 sum -16.592 5.914 24.193 29.926 Atomic orbital electron populations 1.21798 0.92549 1.03002 1.03440 1.23019 0.95278 0.80199 1.02718 1.86464 1.24391 1.32501 1.84411 1.24032 0.80794 0.93079 0.73133 1.90707 1.60276 1.42546 1.43232 1.21052 0.82725 0.89938 1.02071 0.86988 1.22596 0.99126 0.99079 0.94719 1.22834 0.93315 0.98284 1.02601 1.22399 0.98101 0.95347 0.86591 1.48554 1.03917 1.60347 1.22577 1.20779 0.89545 0.76445 0.80956 1.90758 1.74392 1.42302 1.30252 1.20384 0.89577 1.02298 0.98944 1.18703 1.07981 0.94080 0.95569 1.20419 0.96944 0.93426 0.96912 1.20149 1.08311 0.99376 0.93167 1.19115 0.90912 0.91220 0.87695 1.83569 1.69823 1.39392 1.19582 1.20776 1.45462 0.93860 0.86238 0.87640 1.24459 0.95961 1.00030 0.93591 1.69650 1.44474 1.36490 1.01342 0.86183 0.78382 0.83571 0.78776 1.19910 1.20823 1.18360 1.21210 1.07616 0.94871 1.00181 1.20556 0.96478 0.98307 0.92274 0.91565 0.91387 0.90235 0.91084 0.91410 0.90035 0.88465 0.89150 0.89777 0.91128 0.89518 0.88842 0.88864 0.87196 0.86564 0.91126 0.84952 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.04 10.19 -39.26 -0.40 -4.44 16 4 C 0.45 5.90 6.76 36.00 0.24 6.14 16 5 O -0.48 -8.20 14.81 -23.95 -0.35 -8.55 16 6 C 0.15 1.50 3.37 -68.11 -0.23 1.27 16 7 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 8 C -0.12 -0.65 6.44 -24.90 -0.16 -0.81 16 9 C -0.13 -0.54 7.08 -24.58 -0.17 -0.72 16 10 C 0.10 0.64 6.70 -2.50 -0.02 0.63 16 11 N -0.62 -6.93 2.84 -164.28 -0.47 -7.39 16 12 C 0.53 8.17 7.02 -10.99 -0.08 8.10 16 13 O -0.51 -10.34 15.31 -8.47 -0.13 -10.47 16 14 C -0.07 -0.97 4.84 -29.04 -0.14 -1.11 16 15 C -0.16 -2.92 4.38 -104.57 -0.46 -3.38 16 16 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 17 C -0.19 -4.14 9.99 -39.39 -0.39 -4.53 16 18 C 0.16 4.01 6.65 -39.11 -0.26 3.75 16 19 O -0.22 -6.06 8.59 0.06 0.00 -6.06 16 20 C -0.39 -11.36 9.95 30.88 0.31 -11.06 16 21 H 0.11 3.15 5.44 -52.48 -0.29 2.86 16 22 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16 23 N -0.88 -26.18 13.96 55.48 0.77 -25.41 16 24 Si 0.91 22.48 28.62 -169.99 -4.86 17.61 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16 28 C -0.22 -5.06 9.17 -39.40 -0.36 -5.42 16 29 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 35 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.44 7.46 -51.93 -0.39 0.05 16 41 H 0.09 0.98 7.78 -51.93 -0.40 0.57 16 42 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16 43 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 45 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.13 3.16 5.64 -52.48 -0.30 2.86 16 47 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -37.50 395.47 -8.28 -45.79 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.83 Total: 1.15 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.97 Total: -8.19 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.31 Total: -32.80 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.88 Total: -29.52 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.86 Total: 17.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.50 -8.28 -45.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180989293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.650 kcal (2) G-P(sol) polarization free energy of solvation -37.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds