Wall clock time and date at job start Wed Apr 1 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.46978 * 2 1 4 4 C 1.34232 * 116.99821 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00114 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99476 * 180.02562 * 4 3 2 7 7 H 1.09000 * 110.00102 * 301.09039 * 6 4 3 8 8 C 1.54313 * 109.77766 * 62.25166 * 6 4 3 9 9 C 1.55160 * 102.86563 * 141.88228 * 8 6 4 10 10 C 1.54913 * 101.58217 * 324.30581 * 9 8 6 11 11 N 1.47028 * 109.88103 * 180.02562 * 6 4 3 12 12 C 1.34775 * 125.65246 * 61.67098 * 11 6 4 13 13 O 1.21282 * 119.99401 * 359.72795 * 12 11 6 14 14 C 1.50699 * 120.00293 * 179.44212 * 12 11 6 15 15 C 1.50701 * 109.47059 * 180.27709 * 14 12 11 16 16 C 1.38301 * 119.93218 * 269.73346 * 15 14 12 17 17 C 1.38105 * 120.06674 * 179.72959 * 16 15 14 18 18 C 1.38881 * 119.92714 * 0.56496 * 17 16 15 19 19 O 1.35745 * 120.06446 * 179.68818 * 18 17 16 20 20 C 1.34831 * 117.00312 * 174.48531 * 19 18 17 21 21 H 1.08007 * 119.99390 * 5.05163 * 20 19 18 22 22 C 1.38650 * 120.00734 * 185.05737 * 20 19 18 23 23 N 1.31553 * 120.00243 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99649 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47145 * 90.00390 * 24 22 20 26 26 H 1.48507 * 109.47211 * 210.00378 * 24 22 20 27 27 H 1.48497 * 109.47210 * 330.00182 * 24 22 20 28 28 C 1.38874 * 119.86582 * 359.70135 * 18 17 16 29 29 C 1.38096 * 119.93103 * 0.02562 * 28 18 17 30 30 H 1.08995 * 109.47519 * 299.99844 * 1 2 3 31 31 H 1.09003 * 109.46856 * 60.00413 * 1 2 3 32 32 H 1.09001 * 109.46640 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47519 * 240.00156 * 2 1 3 34 34 H 1.09003 * 109.46856 * 119.99587 * 2 1 3 35 35 H 1.08998 * 110.92431 * 23.46740 * 8 6 4 36 36 H 1.09000 * 110.59207 * 260.14372 * 8 6 4 37 37 H 1.08996 * 111.00759 * 206.23250 * 9 8 6 38 38 H 1.08999 * 111.03548 * 82.39220 * 9 8 6 39 39 H 1.09006 * 110.36671 * 278.17250 * 10 9 8 40 40 H 1.08999 * 110.45978 * 155.89579 * 10 9 8 41 41 H 1.09000 * 109.47330 * 300.28221 * 14 12 11 42 42 H 1.09001 * 109.46857 * 60.27918 * 14 12 11 43 43 H 1.07997 * 119.96355 * 359.97339 * 16 15 14 44 44 H 1.07993 * 120.03458 * 180.27097 * 17 16 15 45 45 H 0.97006 * 119.99820 * 180.02562 * 23 22 20 46 46 H 1.08004 * 120.03768 * 179.97438 * 28 18 17 47 47 H 1.08007 * 119.96958 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9374 0.0012 7 1 3.5746 3.4844 -0.8759 8 6 3.4949 3.6779 1.2863 9 6 4.7644 4.4912 1.6531 10 6 5.8914 3.5169 1.2282 11 7 5.3894 2.8711 0.0010 12 6 6.1506 2.3170 -0.9632 13 8 5.6271 1.8118 -1.9336 14 6 7.6524 2.3308 -0.8388 15 6 8.2624 1.6593 -2.0422 16 6 8.5093 0.2987 -2.0220 17 6 9.0630 -0.3205 -3.1254 18 6 9.3828 0.4268 -4.2515 19 8 9.9330 -0.1778 -5.3352 20 6 10.1132 0.5818 -6.4344 21 1 9.9000 1.6401 -6.4002 22 6 10.5719 0.0047 -7.6086 23 7 10.7482 0.7461 -8.6810 24 14 10.9410 -1.8256 -7.6675 25 1 9.7187 -2.5642 -8.0743 26 1 12.0239 -2.0808 -8.6512 27 1 11.3740 -2.2867 -6.3240 28 6 9.1387 1.7938 -4.2665 29 6 8.5796 2.4062 -3.1622 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2471 2.9716 2.0786 36 1 2.6554 4.3434 1.0851 37 1 4.8043 4.6915 2.7237 38 1 4.8136 5.4183 1.0821 39 1 6.0626 2.7726 2.0059 40 1 6.8102 4.0649 1.0196 41 1 8.0028 3.3613 -0.7811 42 1 7.9471 1.7958 0.0641 43 1 8.2652 -0.2809 -1.1440 44 1 9.2515 -1.3837 -3.1107 45 1 11.0688 0.3421 -9.5026 46 1 9.3866 2.3777 -5.1407 47 1 8.3899 3.4694 -3.1731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180989293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:45 Heat of formation + Delta-G solvation = -138.863701 kcal Electronic energy + Delta-G solvation = -30148.378601 eV Core-core repulsion = 25875.384394 eV Total energy + Delta-G solvation = -4272.994208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.07243 -41.06431 -40.46994 -38.81222 -37.99951 -37.58635 -34.54802 -33.53688 -32.76672 -32.26334 -31.84091 -30.70789 -28.42792 -26.85362 -25.50071 -24.13209 -23.74349 -22.90239 -22.49336 -21.73291 -20.20681 -19.82212 -19.12270 -19.05019 -18.30441 -17.77180 -17.37027 -16.95146 -16.75143 -16.26539 -16.00585 -15.70517 -15.55216 -15.39668 -15.22406 -15.08117 -14.47213 -14.38966 -14.32630 -14.22179 -14.09458 -13.91367 -13.69391 -13.32833 -13.09617 -13.01825 -12.90866 -12.74615 -12.57228 -12.53252 -12.45402 -12.38509 -12.09367 -11.94415 -11.83753 -11.60786 -11.43021 -11.31072 -11.01290 -10.86516 -9.84006 -9.81871 -9.02335 -8.52589 -6.25035 0.54466 0.56287 1.08951 1.27709 1.30220 1.33189 1.49088 1.79374 2.04509 2.25891 2.74273 3.00246 3.14304 3.40658 3.45289 3.75998 3.78554 3.91622 3.96511 4.00325 4.02413 4.10137 4.14762 4.21784 4.26905 4.40837 4.51150 4.53482 4.60357 4.73345 4.75711 4.81620 4.84352 4.87164 4.91625 4.94220 5.08405 5.11420 5.21208 5.25154 5.33413 5.34265 5.39589 5.53374 5.69879 5.76208 5.87809 6.19976 6.41266 6.65640 6.81595 7.19178 7.55919 8.59205 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002345 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.627086 B =11937.046967 C =13118.255554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.446 3.554 5 O -0.530 6.530 6 C 0.139 3.861 7 H 0.110 0.890 8 C -0.108 4.108 9 C -0.120 4.120 10 C 0.085 3.915 11 N -0.612 5.612 12 C 0.528 3.472 13 O -0.573 6.573 14 C -0.070 4.070 15 C -0.139 4.139 16 C -0.061 4.061 17 C -0.195 4.195 18 C 0.120 3.880 19 O -0.246 6.246 20 C -0.401 4.401 21 H 0.081 0.919 22 C 0.010 3.990 23 N -0.922 5.922 24 Si 0.971 3.029 25 H -0.269 1.269 26 H -0.262 1.262 27 H -0.263 1.263 28 C -0.236 4.236 29 C -0.061 4.061 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.142 0.858 44 H 0.126 0.874 45 H 0.285 0.715 46 H 0.110 0.890 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 8.832 29.666 35.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.288 3.712 5 O -0.418 6.418 6 C 0.033 3.967 7 H 0.128 0.872 8 C -0.146 4.146 9 C -0.157 4.157 10 C -0.035 4.035 11 N -0.348 5.348 12 C 0.319 3.681 13 O -0.451 6.451 14 C -0.109 4.109 15 C -0.140 4.140 16 C -0.079 4.079 17 C -0.214 4.214 18 C 0.071 3.929 19 O -0.153 6.153 20 C -0.477 4.477 21 H 0.098 0.902 22 C -0.188 4.188 23 N -0.563 5.563 24 Si 0.793 3.207 25 H -0.194 1.194 26 H -0.187 1.187 27 H -0.188 1.188 28 C -0.255 4.255 29 C -0.079 4.079 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.160 0.840 44 H 0.144 0.856 45 H 0.095 0.905 46 H 0.128 0.872 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.045 7.993 28.840 34.947 hybrid contribution 0.279 -1.079 -1.264 1.685 sum -17.767 6.913 27.576 33.525 Atomic orbital electron populations 1.21805 0.89736 1.04370 1.04018 1.23231 0.97467 0.79471 1.01792 1.86479 1.23659 1.33340 1.83840 1.24750 0.80965 0.93858 0.71630 1.90677 1.61251 1.44202 1.45633 1.21433 0.82174 0.88541 1.04581 0.87236 1.22678 1.00706 0.99081 0.92113 1.22871 0.90861 0.97537 1.04457 1.22834 0.99938 0.96088 0.84681 1.48577 1.04474 1.58798 1.22907 1.20976 0.90351 0.75931 0.80839 1.90745 1.75603 1.45587 1.33116 1.20508 0.88285 1.04618 0.97516 1.19278 1.04435 0.93805 0.96438 1.20878 0.95650 0.94368 0.97011 1.20455 1.07960 0.99999 0.92945 1.19631 0.92875 0.92402 0.87992 1.83510 1.72439 1.39454 1.19940 1.20730 1.46113 0.93274 0.87590 0.90175 1.25281 0.95885 1.04613 0.93063 1.69727 1.46166 1.38370 1.02060 0.85225 0.78775 0.77922 0.78805 1.19399 1.18663 1.18772 1.21261 1.08770 0.94529 1.00975 1.20912 0.95407 1.00074 0.91483 0.90163 0.91543 0.88490 0.93306 0.91150 0.89792 0.86251 0.86324 0.88782 0.90352 0.87313 0.84831 0.85666 0.83989 0.85619 0.90509 0.87184 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.05 1.04 6.19 71.98 0.45 1.48 16 3 O -0.36 -7.80 10.19 -51.44 -0.52 -8.32 16 4 C 0.45 11.46 6.76 71.23 0.48 11.94 16 5 O -0.53 -18.10 14.81 26.94 0.40 -17.70 16 6 C 0.14 2.54 3.37 44.59 0.15 2.69 16 7 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 8 C -0.11 -0.79 6.44 31.78 0.20 -0.58 16 9 C -0.12 -0.37 7.08 31.99 0.23 -0.14 16 10 C 0.09 0.72 6.70 86.85 0.58 1.30 16 11 N -0.61 -12.03 2.84 -792.06 -2.25 -14.28 16 12 C 0.53 15.03 7.02 87.66 0.62 15.65 16 13 O -0.57 -23.36 15.31 10.38 0.16 -23.20 16 14 C -0.07 -1.59 4.84 29.10 0.14 -1.45 16 15 C -0.14 -4.69 4.38 -19.83 -0.09 -4.78 16 16 C -0.06 -2.23 9.69 22.25 0.22 -2.01 16 17 C -0.19 -8.51 9.99 22.39 0.22 -8.28 16 18 C 0.12 6.18 6.65 22.58 0.15 6.33 16 19 O -0.25 -14.37 8.59 -22.70 -0.19 -14.56 16 20 C -0.40 -25.00 9.95 67.92 0.68 -24.32 16 21 H 0.08 5.22 5.44 -2.91 -0.02 5.20 16 22 C 0.01 0.60 5.49 84.83 0.47 1.07 16 23 N -0.92 -57.15 13.96 21.61 0.30 -56.85 16 24 Si 0.97 47.81 28.62 68.60 1.96 49.77 16 25 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.26 -12.98 7.11 99.48 0.71 -12.27 16 28 C -0.24 -11.37 9.17 22.39 0.21 -11.17 16 29 C -0.06 -2.33 9.69 22.25 0.22 -2.11 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 34 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 35 H 0.08 0.61 7.85 -2.39 -0.02 0.60 16 36 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.11 0.47 7.46 -2.39 -0.02 0.46 16 41 H 0.13 2.03 7.78 -2.39 -0.02 2.01 16 42 H 0.13 2.14 8.08 -2.39 -0.02 2.12 16 43 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 44 H 0.13 5.13 8.06 -2.91 -0.02 5.10 16 45 H 0.29 16.15 8.31 -92.70 -0.77 15.38 16 46 H 0.11 5.71 5.64 -2.91 -0.02 5.70 16 47 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -89.85 395.47 6.49 -83.36 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.98 Total: 17.05 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.65 Total: -15.27 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.95 Total: -71.12 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.16 Total: -63.79 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.96 Total: 49.77 kcal Total: -89.85 6.49 -83.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180989293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.502 kcal (2) G-P(sol) polarization free energy of solvation -89.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds