Wall clock time and date at job start Wed Apr 1 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35970 * 116.99972 * 179.97438 * 3 2 1 5 5 C 1.38551 * 120.08510 * 359.72552 * 4 3 2 6 6 C 1.38237 * 120.01537 * 179.78694 * 5 4 3 7 7 C 1.38285 * 120.18011 * 0.46934 * 6 5 4 8 8 C 1.38201 * 120.16112 * 359.78511 * 7 6 5 9 9 C 1.38722 * 119.98586 * 359.97438 * 8 7 6 10 10 N 1.40121 * 120.09024 * 179.97438 * 9 8 7 11 11 C 1.46758 * 124.35282 * 269.75357 * 10 9 8 12 12 C 1.54661 * 105.38286 * 162.85618 * 11 10 9 13 13 H 1.08998 * 111.19065 * 267.58833 * 12 11 10 14 14 C 1.50707 * 110.85680 * 143.79222 * 12 11 10 15 15 O 1.20826 * 119.99598 * 6.32661 * 14 12 11 16 16 O 1.34228 * 120.00232 * 186.32826 * 14 12 11 17 17 C 1.45197 * 116.99786 * 179.97438 * 16 14 12 18 18 C 1.53007 * 109.46781 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47148 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99978 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99772 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99988 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.47063 * 89.99958 * 23 21 19 25 25 H 1.48504 * 109.47298 * 209.99766 * 23 21 19 26 26 H 1.48498 * 109.47226 * 330.00071 * 23 21 19 27 27 C 1.54623 * 101.68825 * 25.76577 * 12 11 10 28 28 C 1.34425 * 124.34544 * 90.05099 * 10 9 8 29 29 O 1.21290 * 124.94137 * 0.43036 * 28 10 9 30 30 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 31 31 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 34 34 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 35 35 H 1.08000 * 119.99356 * 0.02562 * 5 4 3 36 36 H 1.08000 * 119.91484 * 180.20897 * 6 5 4 37 37 H 1.07991 * 119.91871 * 179.76682 * 7 6 5 38 38 H 1.07999 * 120.00240 * 180.02562 * 8 7 6 39 39 H 1.08999 * 110.24653 * 281.98268 * 11 10 9 40 40 H 1.08994 * 110.24864 * 43.98377 * 11 10 9 41 41 H 1.08998 * 109.47125 * 299.99785 * 17 16 14 42 42 H 1.08994 * 109.47087 * 60.00358 * 17 16 14 43 43 H 1.08998 * 109.46983 * 299.99710 * 18 17 16 44 44 H 1.09002 * 109.47007 * 59.99886 * 18 17 16 45 45 H 0.96999 * 119.99732 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.48854 * 216.31465 * 27 12 11 47 47 H 1.08994 * 110.48781 * 93.66714 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3543 1.5254 0.0005 5 6 4.1999 0.4279 0.0068 6 6 5.5702 0.6106 0.0029 7 6 6.1013 1.8874 0.0025 8 6 5.2646 2.9874 0.0016 9 6 3.8886 2.8119 0.0005 10 7 3.0383 3.9257 0.0001 11 6 2.5307 4.5805 1.2114 12 6 2.0277 5.9676 0.7478 13 1 2.8085 6.7221 0.8438 14 6 0.7931 6.3733 1.5110 15 8 0.4016 5.6949 2.4311 16 8 0.1285 7.4880 1.1687 17 6 -1.0522 7.8168 1.9473 18 6 -1.6713 9.1102 1.4133 19 6 -2.8970 9.4512 2.2210 20 1 -3.2035 8.8098 3.0341 21 6 -3.6265 10.5824 1.9226 22 7 -4.6965 10.8797 2.6271 23 14 -3.0958 11.6920 0.5167 24 1 -3.7457 11.2428 -0.7408 25 1 -3.4996 13.0906 0.8103 26 1 -1.6204 11.6247 0.3627 27 6 1.6964 5.7000 -0.7386 28 6 2.5782 4.5282 -1.1101 29 8 2.8326 4.1823 -2.2444 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.7885 -0.5706 0.0108 36 1 6.2278 -0.2461 0.0044 37 1 7.1723 2.0253 0.0033 38 1 5.6822 3.9835 0.0009 39 1 1.7110 4.0021 1.6375 40 1 3.3315 4.6957 1.9417 41 1 -1.7774 7.0071 1.8671 42 1 -0.7724 7.9519 2.9921 43 1 -0.9462 9.9201 1.4933 44 1 -1.9511 8.9747 0.3686 45 1 -5.2095 11.6758 2.4174 46 1 1.9422 6.5703 -1.3470 47 1 0.6447 5.4376 -0.8537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194208238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:19 Heat of formation + Delta-G solvation = -128.970363 kcal Electronic energy + Delta-G solvation = -30063.236897 eV Core-core repulsion = 25790.671697 eV Total energy + Delta-G solvation = -4272.565200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44680 -40.37852 -39.56249 -37.83795 -36.81761 -36.07749 -33.67571 -33.28234 -32.12198 -30.85820 -30.42295 -29.16561 -27.99562 -25.69522 -24.50572 -23.92922 -22.83043 -22.03069 -20.80108 -20.45567 -20.01798 -18.60062 -17.94216 -17.52457 -17.07969 -16.50041 -16.45337 -16.27502 -15.88991 -15.61287 -15.51527 -14.79640 -14.77918 -14.25278 -14.08918 -13.98277 -13.87970 -13.59693 -13.40369 -13.10541 -13.00461 -12.94059 -12.50244 -12.37880 -12.28656 -12.05686 -11.90480 -11.63699 -11.55254 -11.41707 -11.30295 -11.12922 -10.75141 -10.70513 -10.23582 -10.01193 -9.94875 -9.76965 -9.38623 -9.30054 -9.16373 -8.65107 -8.55258 -6.15679 -4.17286 0.79055 1.02086 2.27327 2.34894 2.49352 2.80604 2.95907 3.26346 3.28307 3.34021 3.37641 3.94068 4.19789 4.36143 4.38847 4.45694 4.54411 4.58440 4.63348 4.67358 4.74951 4.85123 4.95319 5.05603 5.06240 5.14230 5.17879 5.29169 5.34934 5.37435 5.45356 5.53762 5.63010 5.72520 5.82674 5.88192 5.90496 5.92446 6.05827 6.20120 6.38808 6.46060 6.67030 6.75723 7.05131 7.11891 7.17110 7.58580 7.93642 7.97589 8.36184 8.85651 9.43675 10.96762 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.002167 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.620281 B =12918.013466 C =13558.990481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.305 6.305 4 C 0.142 3.858 5 C -0.206 4.206 6 C -0.073 4.073 7 C -0.152 4.152 8 C -0.069 4.069 9 C 0.110 3.890 10 N -0.570 5.570 11 C 0.120 3.880 12 C -0.097 4.097 13 H 0.131 0.869 14 C 0.469 3.531 15 O -0.506 6.506 16 O -0.355 6.355 17 C 0.082 3.918 18 C -0.010 4.010 19 C -0.529 4.529 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.139 4.139 28 C 0.528 3.472 29 O -0.518 6.518 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.266 0.734 46 H 0.120 0.880 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.770 -22.060 -5.252 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.218 6.218 4 C 0.095 3.905 5 C -0.226 4.226 6 C -0.091 4.091 7 C -0.171 4.171 8 C -0.089 4.089 9 C 0.019 3.981 10 N -0.301 5.301 11 C -0.001 4.001 12 C -0.116 4.116 13 H 0.149 0.851 14 C 0.311 3.689 15 O -0.395 6.395 16 O -0.271 6.271 17 C 0.010 3.990 18 C -0.047 4.047 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.179 4.179 28 C 0.317 3.683 29 O -0.393 6.393 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.139 0.861 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.434 -22.174 -5.557 31.337 hybrid contribution 0.065 0.354 -0.419 0.553 sum 21.499 -21.820 -5.976 31.210 Atomic orbital electron populations 1.21781 0.92349 1.02947 1.03983 1.22850 0.96309 0.81679 1.01269 1.86183 1.18276 1.29502 1.87842 1.19309 0.83043 0.93271 0.94912 1.21185 0.94307 0.97820 1.09256 1.21030 0.94215 0.97523 0.96319 1.20964 0.99975 0.91924 1.04253 1.21192 0.91017 0.99975 0.96680 1.16663 0.88869 0.83277 1.09251 1.45396 1.47922 1.29066 1.07747 1.22120 1.00621 0.90939 0.86457 1.21900 0.95719 0.98793 0.95211 0.85110 1.22811 0.84331 0.79465 0.82290 1.90673 1.67003 1.52828 1.28947 1.86484 1.41296 1.40500 1.58807 1.23454 0.81650 0.99652 0.94269 1.19635 0.96334 0.91204 0.97531 1.20824 1.08334 1.10102 1.17374 0.90650 1.24942 0.94466 0.97276 0.96352 1.69895 1.16837 1.26602 1.40065 0.86749 0.79844 0.79939 0.82659 1.20033 1.21175 1.18727 1.22303 1.02083 0.98822 0.94698 1.20892 0.79503 0.83803 0.84119 1.90737 1.59630 1.68025 1.20865 0.91212 0.91372 0.90232 0.92005 0.91908 0.84992 0.85357 0.85214 0.84892 0.88621 0.89162 0.91550 0.91488 0.95316 0.95732 0.92405 0.86143 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.74 16 2 C 0.05 0.43 5.46 37.16 0.20 0.63 16 3 O -0.31 -3.57 9.88 -19.65 -0.19 -3.77 16 4 C 0.14 1.59 6.70 -39.07 -0.26 1.32 16 5 C -0.21 -1.75 9.04 -39.47 -0.36 -2.11 16 6 C -0.07 -0.52 10.04 -39.56 -0.40 -0.92 16 7 C -0.15 -1.13 10.04 -39.58 -0.40 -1.53 16 8 C -0.07 -0.64 9.96 -39.42 -0.39 -1.03 16 9 C 0.11 1.26 5.40 -83.49 -0.45 0.81 16 10 N -0.57 -6.70 2.70 -112.02 -0.30 -7.00 16 11 C 0.12 1.25 6.59 -3.03 -0.02 1.23 16 12 C -0.10 -1.02 3.67 -90.04 -0.33 -1.35 16 13 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.47 6.95 7.18 36.01 0.26 7.21 16 15 O -0.51 -8.76 15.32 -18.75 -0.29 -9.05 16 16 O -0.35 -6.10 10.21 -39.25 -0.40 -6.50 16 17 C 0.08 1.66 5.40 37.16 0.20 1.86 16 18 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 16 19 C -0.53 -14.69 9.66 -34.44 -0.33 -15.03 16 20 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 22 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 23 Si 0.88 21.08 27.47 -169.99 -4.67 16.42 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 27 C -0.14 -1.52 6.40 -26.74 -0.17 -1.70 16 28 C 0.53 7.03 7.98 -10.85 -0.09 6.95 16 29 O -0.52 -8.75 17.71 5.55 0.10 -8.65 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 7.68 -51.93 -0.40 0.03 16 34 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 35 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 36 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.10 1.16 7.08 -51.93 -0.37 0.79 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 42 H 0.07 1.36 8.13 -51.93 -0.42 0.93 16 43 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 44 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.11 1.31 7.89 -51.93 -0.41 0.90 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -35.00 398.64 -8.25 -43.25 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.91 Total: -1.70 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.37 Total: -2.79 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.47 Total: -33.22 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.78 Total: -27.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.00 -8.25 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194208238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.717 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds