Wall clock time and date at job start Wed Apr 1 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35970 * 116.99972 * 179.97438 * 3 2 1 5 5 C 1.38551 * 120.08510 * 359.72552 * 4 3 2 6 6 C 1.38237 * 120.01537 * 179.78694 * 5 4 3 7 7 C 1.38285 * 120.18011 * 0.46934 * 6 5 4 8 8 C 1.38201 * 120.16112 * 359.78511 * 7 6 5 9 9 C 1.38722 * 119.98586 * 359.97438 * 8 7 6 10 10 N 1.40121 * 120.09024 * 179.97438 * 9 8 7 11 11 C 1.46758 * 124.35282 * 269.75357 * 10 9 8 12 12 C 1.54661 * 105.38286 * 162.85618 * 11 10 9 13 13 H 1.08998 * 111.19065 * 267.58833 * 12 11 10 14 14 C 1.50707 * 110.85680 * 143.79222 * 12 11 10 15 15 O 1.20826 * 119.99598 * 6.32661 * 14 12 11 16 16 O 1.34228 * 120.00232 * 186.32826 * 14 12 11 17 17 C 1.45197 * 116.99786 * 179.97438 * 16 14 12 18 18 C 1.53007 * 109.46781 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47148 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99978 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99772 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99988 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.47063 * 89.99958 * 23 21 19 25 25 H 1.48504 * 109.47298 * 209.99766 * 23 21 19 26 26 H 1.48498 * 109.47226 * 330.00071 * 23 21 19 27 27 C 1.54623 * 101.68825 * 25.76577 * 12 11 10 28 28 C 1.34425 * 124.34544 * 90.05099 * 10 9 8 29 29 O 1.21290 * 124.94137 * 0.43036 * 28 10 9 30 30 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 31 31 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 34 34 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 35 35 H 1.08000 * 119.99356 * 0.02562 * 5 4 3 36 36 H 1.08000 * 119.91484 * 180.20897 * 6 5 4 37 37 H 1.07991 * 119.91871 * 179.76682 * 7 6 5 38 38 H 1.07999 * 120.00240 * 180.02562 * 8 7 6 39 39 H 1.08999 * 110.24653 * 281.98268 * 11 10 9 40 40 H 1.08994 * 110.24864 * 43.98377 * 11 10 9 41 41 H 1.08998 * 109.47125 * 299.99785 * 17 16 14 42 42 H 1.08994 * 109.47087 * 60.00358 * 17 16 14 43 43 H 1.08998 * 109.46983 * 299.99710 * 18 17 16 44 44 H 1.09002 * 109.47007 * 59.99886 * 18 17 16 45 45 H 0.96999 * 119.99732 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.48854 * 216.31465 * 27 12 11 47 47 H 1.08994 * 110.48781 * 93.66714 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3543 1.5254 0.0005 5 6 4.1999 0.4279 0.0068 6 6 5.5702 0.6106 0.0029 7 6 6.1013 1.8874 0.0025 8 6 5.2646 2.9874 0.0016 9 6 3.8886 2.8119 0.0005 10 7 3.0383 3.9257 0.0001 11 6 2.5307 4.5805 1.2114 12 6 2.0277 5.9676 0.7478 13 1 2.8085 6.7221 0.8438 14 6 0.7931 6.3733 1.5110 15 8 0.4016 5.6949 2.4311 16 8 0.1285 7.4880 1.1687 17 6 -1.0522 7.8168 1.9473 18 6 -1.6713 9.1102 1.4133 19 6 -2.8970 9.4512 2.2210 20 1 -3.2035 8.8098 3.0341 21 6 -3.6265 10.5824 1.9226 22 7 -4.6965 10.8797 2.6271 23 14 -3.0958 11.6920 0.5167 24 1 -3.7457 11.2428 -0.7408 25 1 -3.4996 13.0906 0.8103 26 1 -1.6204 11.6247 0.3627 27 6 1.6964 5.7000 -0.7386 28 6 2.5782 4.5282 -1.1101 29 8 2.8326 4.1823 -2.2444 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.7885 -0.5706 0.0108 36 1 6.2278 -0.2461 0.0044 37 1 7.1723 2.0253 0.0033 38 1 5.6822 3.9835 0.0009 39 1 1.7110 4.0021 1.6375 40 1 3.3315 4.6957 1.9417 41 1 -1.7774 7.0071 1.8671 42 1 -0.7724 7.9519 2.9921 43 1 -0.9462 9.9201 1.4933 44 1 -1.9511 8.9747 0.3686 45 1 -5.2095 11.6758 2.4174 46 1 1.9422 6.5703 -1.3470 47 1 0.6447 5.4376 -0.8537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194208238.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:17 Heat of formation + Delta-G solvation = -149.582566 kcal Electronic energy + Delta-G solvation = -30064.130709 eV Core-core repulsion = 25790.671697 eV Total energy + Delta-G solvation = -4273.459012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38665 -41.40683 -40.55057 -38.52781 -38.06003 -37.28202 -35.39390 -34.42389 -32.82459 -32.66513 -31.13235 -29.92864 -28.93565 -27.40060 -25.25360 -24.99987 -23.65332 -22.66730 -22.61713 -21.62118 -20.89894 -19.42333 -19.23479 -18.70224 -18.37241 -17.82034 -17.45682 -17.17564 -16.96712 -16.65763 -16.29105 -16.18192 -15.76347 -15.48567 -15.35692 -14.87908 -14.76598 -14.66195 -14.44022 -14.29875 -14.19446 -14.04943 -13.48211 -13.28670 -13.16436 -13.02804 -12.88622 -12.76095 -12.70722 -12.55357 -12.47056 -12.31758 -12.05365 -11.80022 -11.74073 -11.60672 -11.49523 -11.42949 -11.13212 -10.79790 -10.07223 -9.96097 -9.23396 -8.33059 -6.41014 0.13924 0.37606 1.06473 1.33706 1.40206 1.41208 1.45451 1.53981 1.88417 2.18312 2.35612 2.63745 3.00103 3.02179 3.27467 3.60169 3.69590 3.79995 3.88870 3.96058 4.01221 4.11971 4.18074 4.20244 4.21554 4.27334 4.32130 4.42249 4.49089 4.50877 4.63693 4.65813 4.70419 4.77551 4.81179 4.83091 5.06080 5.10943 5.23854 5.28038 5.31930 5.45633 5.50894 5.52610 5.54692 5.77142 5.85894 6.16823 6.35816 6.63608 6.65775 6.99693 7.24055 8.82876 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.002167 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.620281 B =12918.013466 C =13558.990481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.336 6.336 4 C 0.115 3.885 5 C -0.210 4.210 6 C -0.069 4.069 7 C -0.150 4.150 8 C -0.077 4.077 9 C 0.072 3.928 10 N -0.562 5.562 11 C 0.122 3.878 12 C -0.079 4.079 13 H 0.171 0.829 14 C 0.472 3.528 15 O -0.533 6.533 16 O -0.352 6.352 17 C 0.093 3.907 18 C -0.005 4.005 19 C -0.541 4.541 20 H 0.035 0.965 21 C 0.010 3.990 22 N -0.945 5.945 23 Si 0.953 3.047 24 H -0.265 1.265 25 H -0.283 1.283 26 H -0.240 1.240 27 C -0.135 4.135 28 C 0.523 3.477 29 O -0.562 6.562 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.144 0.856 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.270 0.730 46 H 0.142 0.858 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.947 -22.467 -6.413 34.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.250 6.250 4 C 0.068 3.932 5 C -0.229 4.229 6 C -0.087 4.087 7 C -0.168 4.168 8 C -0.096 4.096 9 C -0.017 4.017 10 N -0.292 5.292 11 C 0.001 3.999 12 C -0.098 4.098 13 H 0.188 0.812 14 C 0.315 3.685 15 O -0.422 6.422 16 O -0.268 6.268 17 C 0.020 3.980 18 C -0.042 4.042 19 C -0.579 4.579 20 H 0.054 0.946 21 C -0.188 4.188 22 N -0.584 5.584 23 Si 0.776 3.224 24 H -0.190 1.190 25 H -0.208 1.208 26 H -0.163 1.163 27 C -0.174 4.174 28 C 0.313 3.687 29 O -0.440 6.440 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.168 0.832 36 H 0.179 0.821 37 H 0.176 0.824 38 H 0.162 0.838 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.160 0.840 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 24.638 -22.614 -6.686 34.104 hybrid contribution -0.898 0.299 0.041 0.947 sum 23.740 -22.314 -6.645 33.252 Atomic orbital electron populations 1.21809 0.92317 1.04198 1.02558 1.23056 0.96375 0.80676 1.02515 1.86135 1.19066 1.31496 1.88283 1.19618 0.83184 0.94114 0.96261 1.21488 0.94849 0.97970 1.08598 1.21471 0.94033 0.98651 0.94521 1.21360 1.01250 0.91505 1.02714 1.21418 0.90294 1.01319 0.96599 1.17105 0.89851 0.83332 1.11458 1.45425 1.47314 1.28935 1.07499 1.22143 1.00842 0.90365 0.86549 1.21965 0.94210 0.99725 0.93921 0.81180 1.23582 0.84713 0.78148 0.82051 1.90677 1.67782 1.53318 1.30430 1.86462 1.40284 1.41810 1.58251 1.22979 0.82757 0.98144 0.94122 1.19477 0.94742 0.92866 0.97156 1.21127 1.10197 1.09655 1.16910 0.94645 1.25963 0.94328 0.99082 0.99413 1.70047 1.18459 1.27601 1.42340 0.85616 0.80685 0.77380 0.78766 1.19028 1.20832 1.16343 1.22315 1.01201 0.98783 0.95145 1.21222 0.79361 0.84244 0.83846 1.90702 1.61378 1.69448 1.22497 0.92483 0.92859 0.87638 0.90983 0.90253 0.83150 0.82141 0.82378 0.83786 0.90736 0.86569 0.92477 0.92033 0.94347 0.94733 0.92139 0.84031 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.05 0.75 5.46 71.98 0.39 1.15 16 3 O -0.34 -8.08 9.88 -93.21 -0.92 -9.00 16 4 C 0.12 2.54 6.70 22.60 0.15 2.69 16 5 C -0.21 -3.23 9.04 22.34 0.20 -3.03 16 6 C -0.07 -0.79 10.04 22.28 0.22 -0.57 16 7 C -0.15 -1.82 10.04 22.27 0.22 -1.59 16 8 C -0.08 -1.30 9.96 22.38 0.22 -1.08 16 9 C 0.07 1.63 5.40 38.19 0.21 1.83 16 10 N -0.56 -12.96 2.70 -626.91 -1.69 -14.65 16 11 C 0.12 2.42 6.59 86.90 0.57 3.00 16 12 C -0.08 -1.50 3.67 -10.42 -0.04 -1.54 16 13 H 0.17 1.99 8.14 -2.39 -0.02 1.97 16 14 C 0.47 13.39 7.18 71.24 0.51 13.91 16 15 O -0.53 -18.38 15.32 21.96 0.34 -18.04 16 16 O -0.35 -11.56 10.21 -51.40 -0.52 -12.09 16 17 C 0.09 3.75 5.40 71.98 0.39 4.14 16 18 C 0.00 -0.23 4.42 29.85 0.13 -0.09 16 19 C -0.54 -30.66 9.66 25.60 0.25 -30.41 16 20 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 21 C 0.01 0.58 5.47 84.65 0.46 1.04 16 22 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 23 Si 0.95 42.74 27.47 68.60 1.88 44.63 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 27 C -0.13 -2.77 6.40 30.59 0.20 -2.58 16 28 C 0.52 13.81 7.98 87.90 0.70 14.51 16 29 O -0.56 -19.27 17.71 -3.06 -0.05 -19.33 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.94 7.68 -2.39 -0.02 0.92 16 34 H 0.08 0.93 7.65 -2.38 -0.02 0.92 16 35 H 0.15 1.59 6.30 -2.91 -0.02 1.58 16 36 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 37 H 0.16 0.97 8.06 -2.92 -0.02 0.94 16 38 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.07 1.83 7.08 -2.39 -0.02 1.81 16 40 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 42 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 43 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 44 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.11 2.41 7.89 -2.39 -0.02 2.39 16 Total: -1.00 -79.18 398.64 5.79 -73.39 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.92 Total: 13.19 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 5.54 Total: -0.15 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.39 Total: -72.59 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -1.16 Total: -58.46 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.63 kcal Total: -79.18 5.79 -73.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194208238.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.188 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds