Wall clock time and date at job start Wed Apr 1 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35945 * 116.99830 * 2 1 4 4 C 1.38071 * 120.00404 * 359.73335 * 3 2 1 5 5 C 1.39979 * 119.84162 * 179.79514 * 4 3 2 6 6 C 1.46963 * 120.08087 * 180.20571 * 5 4 3 7 7 C 1.35031 * 120.00162 * 180.27182 * 6 5 4 8 8 C 1.46259 * 119.99841 * 179.97438 * 7 6 5 9 9 O 1.21720 * 120.00249 * 4.95590 * 8 7 6 10 10 N 1.34772 * 119.99529 * 184.95404 * 8 7 6 11 11 C 1.47159 * 120.98624 * 354.36423 * 10 8 7 12 12 C 1.52878 * 108.60470 * 230.49812 * 11 10 8 13 13 O 1.42954 * 109.30432 * 307.93274 * 12 11 10 14 14 C 1.42969 * 114.16679 * 62.44450 * 13 12 11 15 15 H 1.09002 * 109.50774 * 57.34969 * 14 13 12 16 16 C 1.52996 * 109.51198 * 177.49974 * 14 13 12 17 17 C 1.47158 * 120.98074 * 174.64316 * 10 8 7 18 18 C 1.40030 * 119.83985 * 0.47265 * 5 4 3 19 19 C 1.37646 * 120.00150 * 359.75250 * 18 5 4 20 20 C 1.39052 * 120.16112 * 0.02562 * 19 18 5 21 21 O 1.35609 * 119.92131 * 179.97438 * 20 19 18 22 22 C 1.34759 * 116.99978 * 354.65307 * 21 20 19 23 23 H 1.07993 * 120.00259 * 5.03839 * 22 21 20 24 24 C 1.38705 * 120.00057 * 185.03738 * 22 21 20 25 25 N 1.31526 * 120.00212 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00199 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47354 * 59.99780 * 26 24 22 28 28 H 1.48503 * 109.47619 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47138 * 300.00021 * 26 24 22 30 30 H 1.09001 * 109.47605 * 59.99312 * 1 2 3 31 31 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47174 * 299.99284 * 1 2 3 33 33 H 1.08005 * 120.08110 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00188 * 0.26397 * 6 5 4 35 35 H 1.07994 * 119.99960 * 359.97438 * 7 6 5 36 36 H 1.09002 * 109.67491 * 350.27625 * 11 10 8 37 37 H 1.09000 * 109.68167 * 110.83163 * 11 10 8 38 38 H 1.09000 * 109.57912 * 187.91333 * 12 11 10 39 39 H 1.09003 * 109.40544 * 67.84457 * 12 11 10 40 40 H 1.09005 * 109.47178 * 179.75466 * 16 14 13 41 41 H 1.09002 * 109.47367 * 299.74573 * 16 14 13 42 42 H 1.08993 * 109.47145 * 59.75065 * 16 14 13 43 43 H 1.09001 * 109.68189 * 249.16569 * 17 10 8 44 44 H 1.08996 * 109.67827 * 9.71618 * 17 10 8 45 45 H 1.08008 * 119.99734 * 179.77825 * 18 5 4 46 46 H 1.08001 * 119.91736 * 179.97438 * 19 18 5 47 47 H 0.96995 * 119.99895 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2942 2.3693 -0.0056 5 6 1.9332 3.6147 -0.0012 6 6 1.1379 4.8506 -0.0025 7 6 1.7560 6.0512 -0.0039 8 6 0.9645 7.2811 -0.0057 9 8 -0.2480 7.2247 0.0850 10 7 1.5778 8.4768 -0.1079 11 6 3.0458 8.5789 -0.0949 12 6 3.4524 9.6320 0.9360 13 8 2.7337 10.8418 0.6845 14 6 1.3152 10.7176 0.8133 15 1 1.0706 10.3586 1.8130 16 6 0.6599 12.0809 0.5842 17 6 0.7992 9.7196 -0.2295 18 6 3.3319 3.6802 -0.0012 19 6 4.0752 2.5217 -0.0004 20 6 3.4405 1.2844 -0.0001 21 8 4.1775 0.1461 0.0002 22 6 5.5135 0.2823 -0.1117 23 1 5.9577 1.2666 -0.1145 24 6 6.3183 -0.8419 -0.2234 25 7 5.7775 -2.0408 -0.2206 26 14 8.1703 -0.6532 -0.3779 27 1 8.6980 0.0481 0.8199 28 1 8.7977 -1.9952 -0.4828 29 1 8.4876 0.1374 -1.5943 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 0.2156 2.3143 -0.0103 34 1 0.0592 4.7987 -0.0026 35 1 2.8347 6.1032 -0.0035 36 1 3.4783 7.6157 0.1757 37 1 3.4017 8.8779 -1.0808 38 1 4.5231 9.8222 0.8611 39 1 3.2162 9.2695 1.9365 40 1 -0.4218 11.9845 0.6782 41 1 1.0272 12.7900 1.3261 42 1 0.9072 12.4396 -0.4149 43 1 0.9251 10.1353 -1.2292 44 1 -0.2552 9.5113 -0.0482 45 1 3.8276 4.6398 -0.0015 46 1 5.1539 2.5737 -0.0009 47 1 6.3402 -2.8269 -0.2990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198296253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:32 Heat of formation + Delta-G solvation = -90.017351 kcal Electronic energy + Delta-G solvation = -29552.995833 eV Core-core repulsion = 25282.119762 eV Total energy + Delta-G solvation = -4270.876071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.48119 -39.74270 -38.53440 -37.71374 -36.59812 -34.90454 -33.51857 -32.94971 -32.25217 -29.80031 -29.07265 -28.88144 -27.18072 -26.30189 -25.48632 -23.71031 -23.30764 -21.86579 -21.50688 -20.34692 -18.63322 -18.23833 -18.00516 -17.18863 -16.93048 -16.36723 -15.80594 -15.74329 -15.41637 -15.24570 -15.22113 -14.90548 -14.71986 -14.22961 -14.02914 -13.75275 -13.63741 -13.49535 -13.43163 -13.16211 -12.64704 -12.51055 -12.42263 -12.11931 -11.92075 -11.84612 -11.69936 -11.55758 -11.47424 -11.12461 -11.06058 -10.98309 -10.82426 -10.74827 -10.55074 -10.40667 -9.80778 -9.61919 -9.46789 -8.90972 -8.70359 -8.02659 -6.95879 -6.65427 -4.16660 0.95525 2.07159 2.46849 2.76527 3.02450 3.04202 3.07121 3.36315 3.46605 3.79903 3.90889 4.32583 4.42251 4.52131 4.65697 4.72093 4.79111 4.84438 4.87427 4.95149 4.97526 5.19456 5.22273 5.24733 5.36238 5.40434 5.46196 5.47876 5.51751 5.53696 5.58952 5.61662 5.66547 5.77320 5.80515 5.95588 6.13600 6.18991 6.39047 6.43536 6.53472 6.79222 6.80010 6.95088 7.04187 7.20445 7.29593 7.42982 7.74812 8.03893 8.19057 8.77300 9.45760 10.50135 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.002212 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.801687 B =12654.503121 C =14642.873531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.135 4.135 5 C -0.169 4.169 6 C 0.040 3.960 7 C -0.284 4.284 8 C 0.561 3.439 9 O -0.557 6.557 10 N -0.620 5.620 11 C 0.072 3.928 12 C 0.048 3.952 13 O -0.379 6.379 14 C 0.073 3.927 15 H 0.063 0.937 16 C -0.143 4.143 17 C 0.084 3.916 18 C -0.058 4.058 19 C -0.225 4.225 20 C 0.149 3.851 21 O -0.146 6.146 22 C -0.391 4.391 23 H 0.097 0.903 24 C 0.042 3.958 25 N -0.844 5.844 26 Si 0.945 3.055 27 H -0.267 1.267 28 H -0.276 1.276 29 H -0.267 1.267 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.138 0.862 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.770 19.816 0.887 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.170 4.170 6 C 0.021 3.979 7 C -0.305 4.305 8 C 0.355 3.645 9 O -0.437 6.437 10 N -0.355 5.355 11 C -0.051 4.051 12 C -0.030 4.030 13 O -0.298 6.298 14 C 0.014 3.986 15 H 0.081 0.919 16 C -0.201 4.201 17 C -0.039 4.039 18 C -0.076 4.076 19 C -0.245 4.245 20 C 0.092 3.908 21 O -0.046 6.046 22 C -0.466 4.466 23 H 0.115 0.885 24 C -0.166 4.166 25 N -0.475 5.475 26 Si 0.769 3.231 27 H -0.192 1.192 28 H -0.201 1.201 29 H -0.192 1.192 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.133 0.867 46 H 0.155 0.845 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.189 19.209 0.880 20.200 hybrid contribution 0.707 0.007 -0.043 0.708 sum -5.483 19.216 0.837 20.000 Atomic orbital electron populations 1.22922 0.80137 1.03102 1.00429 1.86235 1.19598 1.26174 1.89695 1.18042 0.89380 0.84621 1.07257 1.20878 0.98613 0.90904 1.05083 1.18151 0.92775 0.91363 1.14707 1.22257 0.99132 0.90956 0.85599 1.22493 0.99824 0.91475 1.16717 1.18424 0.87422 0.83561 0.75075 1.90760 1.14490 1.87099 1.51384 1.47960 1.06628 1.06264 1.74619 1.22411 0.80530 1.01407 1.00744 1.22917 0.97296 0.85079 0.97700 1.87953 1.17842 1.32598 1.91390 1.22498 0.81554 0.96333 0.98171 0.91922 1.21724 1.00222 0.94924 1.03186 1.22270 0.97964 0.84151 0.99487 1.20906 0.92469 0.97290 0.96975 1.20822 1.00712 0.90725 1.12237 1.18884 0.88271 0.87646 0.96023 1.83987 1.19707 1.25866 1.75048 1.21476 0.78307 0.95088 1.51763 0.88527 1.25426 1.00955 0.94142 0.96041 1.70038 1.36829 0.97862 1.42788 0.85709 0.79688 0.78256 0.79437 1.19207 1.20061 1.19205 0.93430 0.88939 0.93433 0.85842 0.85995 0.85542 0.88018 0.90542 0.87413 0.92546 0.90697 0.91442 0.91527 0.90920 0.88158 0.86748 0.84480 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.39 10.28 -34.18 -0.35 -6.74 16 3 C 0.05 1.10 6.70 -39.12 -0.26 0.84 16 4 C -0.14 -2.41 8.77 -38.99 -0.34 -2.75 16 5 C -0.17 -2.86 5.87 -105.04 -0.62 -3.48 16 6 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 7 C -0.28 -3.92 8.72 -37.50 -0.33 -4.24 16 8 C 0.56 8.13 7.62 -13.04 -0.10 8.03 16 9 O -0.56 -9.75 15.71 5.17 0.08 -9.67 16 10 N -0.62 -7.22 3.03 -174.22 -0.53 -7.75 16 11 C 0.07 0.64 6.48 -3.74 -0.02 0.61 16 12 C 0.05 0.38 6.97 37.09 0.26 0.64 16 13 O -0.38 -3.71 10.39 -35.23 -0.37 -4.07 16 14 C 0.07 0.65 3.40 -26.58 -0.09 0.56 16 15 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 16 C -0.14 -0.95 9.57 37.16 0.36 -0.59 16 17 C 0.08 0.86 5.94 -3.53 -0.02 0.84 16 18 C -0.06 -0.99 9.40 -39.13 -0.37 -1.36 16 19 C -0.23 -4.55 9.14 -39.50 -0.36 -4.91 16 20 C 0.15 3.49 6.67 -38.76 -0.26 3.23 16 21 O -0.15 -4.03 9.52 -13.93 -0.13 -4.16 16 22 C -0.39 -10.33 9.48 30.91 0.29 -10.03 16 23 H 0.10 2.29 5.18 -52.49 -0.27 2.02 16 24 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 25 N -0.84 -23.69 13.67 55.48 0.76 -22.93 16 26 Si 0.95 19.23 29.55 -169.99 -5.02 14.21 16 27 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 28 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 29 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 30 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.61 7.67 -51.93 -0.40 0.21 16 33 H 0.12 1.85 6.28 -52.48 -0.33 1.52 16 34 H 0.12 1.82 7.53 -52.49 -0.40 1.43 16 35 H 0.13 1.49 3.98 -52.49 -0.21 1.28 16 36 H 0.10 0.81 5.51 -51.93 -0.29 0.52 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 1.12 7.06 -51.93 -0.37 0.75 16 45 H 0.11 1.58 6.15 -52.48 -0.32 1.26 16 46 H 0.14 2.67 5.61 -52.49 -0.29 2.38 16 47 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -32.86 387.16 -7.26 -40.12 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.21 Total: 5.11 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.32 Total: -9.94 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.23 Total: -30.68 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.77 Total: -24.65 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.86 -7.26 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198296253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.898 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds