Wall clock time and date at job start Wed Apr 1 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35945 * 116.99830 * 2 1 4 4 C 1.38071 * 120.00404 * 359.73335 * 3 2 1 5 5 C 1.39979 * 119.84162 * 179.79514 * 4 3 2 6 6 C 1.46963 * 120.08087 * 180.20571 * 5 4 3 7 7 C 1.35031 * 120.00162 * 180.27182 * 6 5 4 8 8 C 1.46259 * 119.99841 * 179.97438 * 7 6 5 9 9 O 1.21720 * 120.00249 * 4.95590 * 8 7 6 10 10 N 1.34772 * 119.99529 * 184.95404 * 8 7 6 11 11 C 1.47159 * 120.98624 * 354.36423 * 10 8 7 12 12 C 1.52878 * 108.60470 * 230.49812 * 11 10 8 13 13 O 1.42954 * 109.30432 * 307.93274 * 12 11 10 14 14 C 1.42969 * 114.16679 * 62.44450 * 13 12 11 15 15 H 1.09002 * 109.50774 * 57.34969 * 14 13 12 16 16 C 1.52996 * 109.51198 * 177.49974 * 14 13 12 17 17 C 1.47158 * 120.98074 * 174.64316 * 10 8 7 18 18 C 1.40030 * 119.83985 * 0.47265 * 5 4 3 19 19 C 1.37646 * 120.00150 * 359.75250 * 18 5 4 20 20 C 1.39052 * 120.16112 * 0.02562 * 19 18 5 21 21 O 1.35609 * 119.92131 * 179.97438 * 20 19 18 22 22 C 1.34759 * 116.99978 * 354.65307 * 21 20 19 23 23 H 1.07993 * 120.00259 * 5.03839 * 22 21 20 24 24 C 1.38705 * 120.00057 * 185.03738 * 22 21 20 25 25 N 1.31526 * 120.00212 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00199 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47354 * 59.99780 * 26 24 22 28 28 H 1.48503 * 109.47619 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47138 * 300.00021 * 26 24 22 30 30 H 1.09001 * 109.47605 * 59.99312 * 1 2 3 31 31 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47174 * 299.99284 * 1 2 3 33 33 H 1.08005 * 120.08110 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00188 * 0.26397 * 6 5 4 35 35 H 1.07994 * 119.99960 * 359.97438 * 7 6 5 36 36 H 1.09002 * 109.67491 * 350.27625 * 11 10 8 37 37 H 1.09000 * 109.68167 * 110.83163 * 11 10 8 38 38 H 1.09000 * 109.57912 * 187.91333 * 12 11 10 39 39 H 1.09003 * 109.40544 * 67.84457 * 12 11 10 40 40 H 1.09005 * 109.47178 * 179.75466 * 16 14 13 41 41 H 1.09002 * 109.47367 * 299.74573 * 16 14 13 42 42 H 1.08993 * 109.47145 * 59.75065 * 16 14 13 43 43 H 1.09001 * 109.68189 * 249.16569 * 17 10 8 44 44 H 1.08996 * 109.67827 * 9.71618 * 17 10 8 45 45 H 1.08008 * 119.99734 * 179.77825 * 18 5 4 46 46 H 1.08001 * 119.91736 * 179.97438 * 19 18 5 47 47 H 0.96995 * 119.99895 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2942 2.3693 -0.0056 5 6 1.9332 3.6147 -0.0012 6 6 1.1379 4.8506 -0.0025 7 6 1.7560 6.0512 -0.0039 8 6 0.9645 7.2811 -0.0057 9 8 -0.2480 7.2247 0.0850 10 7 1.5778 8.4768 -0.1079 11 6 3.0458 8.5789 -0.0949 12 6 3.4524 9.6320 0.9360 13 8 2.7337 10.8418 0.6845 14 6 1.3152 10.7176 0.8133 15 1 1.0706 10.3586 1.8130 16 6 0.6599 12.0809 0.5842 17 6 0.7992 9.7196 -0.2295 18 6 3.3319 3.6802 -0.0012 19 6 4.0752 2.5217 -0.0004 20 6 3.4405 1.2844 -0.0001 21 8 4.1775 0.1461 0.0002 22 6 5.5135 0.2823 -0.1117 23 1 5.9577 1.2666 -0.1145 24 6 6.3183 -0.8419 -0.2234 25 7 5.7775 -2.0408 -0.2206 26 14 8.1703 -0.6532 -0.3779 27 1 8.6980 0.0481 0.8199 28 1 8.7977 -1.9952 -0.4828 29 1 8.4876 0.1374 -1.5943 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 0.2156 2.3143 -0.0103 34 1 0.0592 4.7987 -0.0026 35 1 2.8347 6.1032 -0.0035 36 1 3.4783 7.6157 0.1757 37 1 3.4017 8.8779 -1.0808 38 1 4.5231 9.8222 0.8611 39 1 3.2162 9.2695 1.9365 40 1 -0.4218 11.9845 0.6782 41 1 1.0272 12.7900 1.3261 42 1 0.9072 12.4396 -0.4149 43 1 0.9251 10.1353 -1.2292 44 1 -0.2552 9.5113 -0.0482 45 1 3.8276 4.6398 -0.0015 46 1 5.1539 2.5737 -0.0009 47 1 6.3402 -2.8269 -0.2990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198296253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:30 Heat of formation + Delta-G solvation = -111.479522 kcal Electronic energy + Delta-G solvation = -29553.926502 eV Core-core repulsion = 25282.119762 eV Total energy + Delta-G solvation = -4271.806740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47507 -41.23899 -39.50282 -39.32065 -38.08722 -35.85187 -34.70841 -34.15930 -33.68932 -31.30329 -30.28787 -29.76308 -28.26325 -27.60866 -27.09647 -24.62868 -24.37527 -23.33211 -22.53748 -21.47983 -19.97113 -19.70702 -19.42013 -18.44760 -17.88903 -17.47030 -17.10202 -16.75934 -16.68932 -16.57646 -16.32423 -16.05265 -15.75953 -15.57919 -15.35050 -15.28719 -15.03267 -14.92717 -14.38805 -13.96162 -13.88656 -13.60204 -13.33945 -13.30482 -13.17584 -12.92154 -12.88513 -12.68433 -12.65151 -12.41372 -12.20967 -12.17954 -12.14315 -12.02719 -11.74891 -11.35123 -11.19587 -10.99503 -10.88295 -10.53446 -9.65381 -9.46921 -8.54561 -8.47256 -6.11594 -0.35848 0.53713 1.06476 1.37712 1.49545 1.54394 1.84576 2.17518 2.24973 2.54354 2.73338 2.85087 3.13641 3.34159 3.46970 3.66308 3.84751 3.93505 3.98734 4.03057 4.10456 4.17827 4.20170 4.29003 4.31923 4.41143 4.43012 4.50907 4.52418 4.61638 4.67945 4.70237 4.73640 4.85046 4.88876 4.90790 4.98944 5.04917 5.07685 5.22181 5.25649 5.35838 5.47633 5.50042 5.74254 5.91080 5.97158 6.13721 6.27760 6.58535 6.95214 7.07062 7.75041 8.74309 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.002212 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.801687 B =12654.503121 C =14642.873531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.037 3.963 4 C -0.133 4.133 5 C -0.136 4.136 6 C 0.020 3.980 7 C -0.246 4.246 8 C 0.552 3.448 9 O -0.591 6.591 10 N -0.616 5.616 11 C 0.065 3.935 12 C 0.045 3.955 13 O -0.390 6.390 14 C 0.075 3.925 15 H 0.055 0.945 16 C -0.140 4.140 17 C 0.081 3.919 18 C -0.063 4.063 19 C -0.218 4.218 20 C 0.103 3.897 21 O -0.211 6.211 22 C -0.415 4.415 23 H 0.111 0.889 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.021 2.979 27 H -0.254 1.254 28 H -0.276 1.276 29 H -0.254 1.254 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.158 0.842 46 H 0.139 0.861 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 24.444 0.775 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C -0.008 4.008 4 C -0.152 4.152 5 C -0.137 4.137 6 C 0.000 4.000 7 C -0.266 4.266 8 C 0.346 3.654 9 O -0.474 6.474 10 N -0.348 5.348 11 C -0.056 4.056 12 C -0.032 4.032 13 O -0.309 6.309 14 C 0.017 3.983 15 H 0.073 0.927 16 C -0.197 4.197 17 C -0.041 4.041 18 C -0.081 4.081 19 C -0.237 4.237 20 C 0.050 3.950 21 O -0.116 6.116 22 C -0.491 4.491 23 H 0.129 0.871 24 C -0.221 4.221 25 N -0.551 5.551 26 Si 0.840 3.160 27 H -0.178 1.178 28 H -0.200 1.200 29 H -0.178 1.178 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.172 0.828 34 H 0.144 0.856 35 H 0.172 0.828 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.151 0.849 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.175 0.825 46 H 0.157 0.843 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.327 23.946 0.771 24.780 hybrid contribution 0.285 -0.811 0.005 0.860 sum -6.042 23.135 0.776 23.924 Atomic orbital electron populations 1.23275 0.77114 1.04985 1.02060 1.86190 1.22929 1.26850 1.89875 1.18379 0.89173 0.85791 1.07424 1.21246 1.00092 0.90059 1.03784 1.18506 0.93076 0.91873 1.10211 1.22153 0.99291 0.90404 0.88156 1.22815 1.01139 0.90769 1.11877 1.18574 0.87048 0.84583 0.75207 1.90760 1.15989 1.87706 1.52909 1.48095 1.08165 1.05869 1.72702 1.22695 0.78520 1.02519 1.01912 1.23078 0.98538 0.84326 0.97236 1.87956 1.18085 1.33537 1.91370 1.22514 0.81508 0.97055 0.97218 0.92663 1.21733 1.00764 0.93696 1.03528 1.22395 0.97306 0.83854 1.00586 1.21279 0.92479 0.97933 0.96403 1.21039 1.01190 0.90706 1.10756 1.19594 0.89521 0.88194 0.97670 1.83978 1.20241 1.27826 1.79563 1.21956 0.78728 0.95958 1.52445 0.87139 1.26704 1.06240 0.93546 0.95630 1.70202 1.38637 0.98843 1.47381 0.84611 0.72970 0.78296 0.80131 1.17759 1.20038 1.17840 0.91666 0.87235 0.91608 0.82808 0.85593 0.82842 0.86707 0.89219 0.84913 0.92754 0.89605 0.91001 0.91164 0.89864 0.89354 0.82472 0.84321 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.34 -15.03 10.28 -78.95 -0.81 -15.84 16 3 C 0.04 1.61 6.70 22.57 0.15 1.76 16 4 C -0.13 -4.48 8.77 22.65 0.20 -4.29 16 5 C -0.14 -4.16 5.87 -20.14 -0.12 -4.28 16 6 C 0.02 0.52 9.45 23.82 0.23 0.74 16 7 C -0.25 -5.59 8.72 23.62 0.21 -5.39 16 8 C 0.55 14.02 7.62 86.33 0.66 14.67 16 9 O -0.59 -19.20 15.71 -4.41 -0.07 -19.27 16 10 N -0.62 -12.07 3.03 -823.33 -2.49 -14.56 16 11 C 0.07 0.85 6.48 86.21 0.56 1.41 16 12 C 0.05 0.54 6.97 71.94 0.50 1.05 16 13 O -0.39 -6.33 10.39 -148.98 -1.55 -7.87 16 14 C 0.08 1.14 3.40 30.69 0.10 1.25 16 15 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 16 C -0.14 -1.48 9.57 71.98 0.69 -0.79 16 17 C 0.08 1.43 5.94 86.35 0.51 1.95 16 18 C -0.06 -1.95 9.40 22.56 0.21 -1.74 16 19 C -0.22 -8.70 9.14 22.33 0.20 -8.50 16 20 C 0.10 5.01 6.67 22.80 0.15 5.16 16 21 O -0.21 -12.56 9.52 -6.49 -0.06 -12.63 16 22 C -0.42 -23.31 9.48 67.93 0.64 -22.66 16 23 H 0.11 5.47 5.18 -2.91 -0.02 5.46 16 24 C -0.02 -1.25 5.49 84.85 0.47 -0.79 16 25 N -0.91 -55.50 13.67 21.62 0.30 -55.21 16 26 Si 1.02 41.05 29.55 68.60 2.03 43.08 16 27 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 28 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 29 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 30 H 0.06 1.60 7.65 -2.39 -0.02 1.58 16 31 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.07 1.60 7.67 -2.38 -0.02 1.58 16 33 H 0.15 4.16 6.28 -2.91 -0.02 4.14 16 34 H 0.13 3.31 7.53 -2.91 -0.02 3.29 16 35 H 0.15 2.64 3.98 -2.91 -0.01 2.63 16 36 H 0.11 1.17 5.51 -2.39 -0.01 1.15 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.80 7.06 -2.39 -0.02 1.78 16 45 H 0.16 3.46 6.15 -2.91 -0.02 3.44 16 46 H 0.14 5.40 5.61 -2.91 -0.02 5.38 16 47 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.10 387.16 4.83 -74.27 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 1.01 Total: 26.79 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 6.48 Total: -18.76 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -2.20 Total: -69.77 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -2.49 Total: -55.61 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -79.10 4.83 -74.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198296253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.208 kcal (2) G-P(sol) polarization free energy of solvation -79.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds