Wall clock time and date at job start Wed Apr 1 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.55508 * 2 1 4 4 C 1.53285 * 109.51059 * 120.12134 * 2 1 3 5 5 N 1.47169 * 108.56910 * 172.95294 * 4 2 1 6 6 C 1.34779 * 121.07530 * 128.72767 * 5 4 2 7 7 O 1.21593 * 119.99644 * 175.99483 * 6 5 4 8 8 C 1.47534 * 120.00291 * 356.00312 * 6 5 4 9 9 C 1.39667 * 120.19680 * 52.51490 * 8 6 5 10 10 C 1.37835 * 119.91589 * 180.25246 * 9 8 6 11 11 C 1.38576 * 120.32239 * 359.79688 * 10 9 8 12 12 C 1.38022 * 120.40165 * 359.97438 * 11 10 9 13 13 C 1.38834 * 120.07561 * 359.97438 * 12 11 10 14 14 O 1.35511 * 120.16113 * 179.97438 * 13 12 11 15 15 C 1.34818 * 117.00390 * 5.91932 * 14 13 12 16 16 H 1.07996 * 119.99463 * 354.85442 * 15 14 13 17 17 C 1.38699 * 120.00022 * 174.85918 * 15 14 13 18 18 N 1.31517 * 120.00016 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99720 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46957 * 60.00062 * 19 17 15 21 21 H 1.48500 * 109.47338 * 299.99963 * 19 17 15 22 22 H 1.48501 * 109.46794 * 180.02562 * 19 17 15 23 23 C 1.47345 * 117.84006 * 309.00123 * 5 4 2 24 24 C 1.51847 * 108.64054 * 48.75809 * 23 5 4 25 25 C 1.54445 * 110.55114 * 186.44852 * 24 23 5 26 26 C 1.54528 * 102.16821 * 209.32255 * 25 24 23 27 27 O 1.43306 * 107.61199 * 20.64497 * 26 25 24 28 28 C 1.43813 * 110.01644 * 1.60109 * 27 26 25 29 29 O 1.41793 * 111.67845 * 310.34548 * 24 23 5 30 30 H 1.08996 * 109.47271 * 299.87666 * 1 2 3 31 31 H 1.09005 * 109.46842 * 59.88218 * 1 2 3 32 32 H 1.09005 * 109.46978 * 179.87204 * 1 2 3 33 33 H 1.09000 * 109.62060 * 53.23335 * 4 2 1 34 34 H 1.09000 * 109.62448 * 292.68064 * 4 2 1 35 35 H 1.07997 * 120.04522 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.83736 * 179.76387 * 10 9 8 37 37 H 1.08002 * 119.79489 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.96031 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99822 * 0.02562 * 18 17 15 40 40 H 1.09004 * 109.67809 * 168.55814 * 23 5 4 41 41 H 1.09002 * 109.67833 * 289.10083 * 23 5 4 42 42 H 1.09006 * 110.86269 * 327.49458 * 25 24 23 43 43 H 1.09005 * 110.86556 * 91.15132 * 25 24 23 44 44 H 1.08994 * 109.82960 * 261.11841 * 26 25 24 45 45 H 1.09005 * 109.90129 * 140.19991 * 26 25 24 46 46 H 1.08998 * 110.32195 * 217.57830 * 28 27 26 47 47 H 1.09000 * 110.31951 * 95.37765 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7251 1.2497 5 7 3.5035 -0.8627 1.1460 6 6 4.3120 -0.4739 2.1518 7 8 5.5108 -0.6632 2.0759 8 6 3.7427 0.1812 3.3448 9 6 2.6905 -0.4184 4.0406 10 6 2.1595 0.2012 5.1514 11 6 2.6673 1.4156 5.5849 12 6 3.7099 2.0176 4.9100 13 6 4.2580 1.4076 3.7897 14 8 5.2814 1.9973 3.1255 15 6 5.8037 3.1135 3.6724 16 1 5.3523 3.5452 4.5534 17 6 6.9206 3.7073 3.1034 18 7 7.4704 3.1812 2.0307 19 14 7.6437 5.2542 3.8607 20 1 8.0595 4.9733 5.2584 21 1 6.6223 6.3321 3.8553 22 1 8.8238 5.6872 3.0701 23 6 4.0545 -1.4337 -0.0956 24 6 3.4210 -0.7240 -1.2791 25 6 3.8448 -1.3950 -2.6040 26 6 3.7962 -0.2129 -3.5980 27 8 3.8761 0.9981 -2.8358 28 6 4.0096 0.6914 -1.4371 29 8 2.0083 -0.6772 -1.1669 30 1 -0.3633 0.5119 0.8910 31 1 -0.3633 0.5157 -0.8890 32 1 -0.3633 -1.0277 -0.0023 33 1 1.5849 -1.7126 1.3129 34 1 1.7911 -0.1452 2.1379 35 1 2.2910 -1.3646 3.7066 36 1 1.3434 -0.2617 5.6863 37 1 2.2445 1.8938 6.4561 38 1 4.0999 2.9642 5.2538 39 1 7.0947 2.3782 1.6373 40 1 5.1347 -1.2899 -0.1180 41 1 3.8243 -2.4981 -0.1438 42 1 4.8548 -1.7982 -2.5293 43 1 3.1357 -2.1720 -2.8899 44 1 2.8604 -0.2374 -4.1562 45 1 4.6390 -0.2724 -4.2868 46 1 3.4450 1.4054 -0.8375 47 1 5.0602 0.6991 -1.1466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279929445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:17 Heat of formation + Delta-G solvation = -111.548942 kcal Electronic energy + Delta-G solvation = -32560.502631 eV Core-core repulsion = 28288.692881 eV Total energy + Delta-G solvation = -4271.809751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.02296 -39.67036 -38.38975 -37.47190 -36.60759 -34.53971 -33.57756 -32.40071 -30.94587 -30.71115 -29.25175 -29.01509 -26.71591 -25.85979 -25.04427 -23.20402 -22.73259 -21.76568 -21.60124 -20.21694 -19.23928 -18.51194 -17.44753 -17.41006 -16.56643 -16.31883 -15.87979 -15.49579 -15.32877 -15.03313 -14.71353 -14.58123 -14.30676 -14.14852 -13.83754 -13.80886 -13.62090 -13.34320 -13.15992 -13.07206 -12.70831 -12.59123 -12.28595 -12.15670 -11.74405 -11.63547 -11.53919 -11.42883 -11.35183 -11.22664 -11.02745 -10.88251 -10.62125 -10.58888 -10.33363 -10.00953 -9.70063 -9.44369 -9.25531 -8.87712 -8.44302 -8.32897 -7.49920 -6.86115 -4.15652 1.63776 2.12934 2.98849 3.19555 3.24533 3.27544 3.36401 3.41505 3.81027 4.03135 4.30539 4.34435 4.52065 4.61521 4.80660 4.84924 4.87372 4.96220 5.03405 5.08813 5.10747 5.21476 5.35620 5.36938 5.41625 5.44866 5.55457 5.57576 5.59814 5.66104 5.67254 5.78020 5.80779 5.85077 5.87806 5.96055 6.01120 6.04386 6.37290 6.44597 6.59842 6.81125 6.91233 6.92169 7.09897 7.12770 7.37036 7.48989 7.62297 8.29100 8.61596 8.80151 9.46061 10.57231 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.004545 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.773759 B = 6158.964623 C = 7971.493997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.067 3.933 3 H 0.069 0.931 4 C 0.075 3.925 5 N -0.621 5.621 6 C 0.581 3.419 7 O -0.520 6.520 8 C -0.222 4.222 9 C -0.045 4.045 10 C -0.222 4.222 11 C -0.053 4.053 12 C -0.229 4.229 13 C 0.191 3.809 14 O -0.173 6.173 15 C -0.477 4.477 16 H 0.087 0.913 17 C 0.015 3.985 18 N -0.864 5.864 19 Si 1.096 2.904 20 H -0.280 1.280 21 H -0.280 1.280 22 H -0.272 1.272 23 C 0.100 3.900 24 C 0.075 3.925 25 C -0.138 4.138 26 C 0.055 3.945 27 O -0.378 6.378 28 C 0.033 3.967 29 O -0.356 6.356 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.288 0.712 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 -8.109 -4.381 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 H 0.087 0.913 4 C -0.048 4.048 5 N -0.356 5.356 6 C 0.371 3.629 7 O -0.394 6.394 8 C -0.227 4.227 9 C -0.064 4.064 10 C -0.241 4.241 11 C -0.072 4.072 12 C -0.249 4.249 13 C 0.133 3.867 14 O -0.074 6.074 15 C -0.552 4.552 16 H 0.104 0.896 17 C -0.193 4.193 18 N -0.493 5.493 19 Si 0.919 3.081 20 H -0.206 1.206 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.023 4.023 24 C 0.034 3.966 25 C -0.176 4.176 26 C -0.021 4.021 27 O -0.297 6.297 28 C -0.044 4.044 29 O -0.275 6.275 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.329 -6.994 -5.057 14.242 hybrid contribution -1.252 -1.258 0.669 1.896 sum -12.581 -8.252 -4.388 15.673 Atomic orbital electron populations 1.21697 0.91925 1.03049 1.03041 1.22629 0.95563 0.96140 0.84721 0.91334 1.22645 0.80466 1.01637 1.00043 1.48104 1.06556 1.64594 1.16389 1.18266 0.85705 0.76712 0.82201 1.90785 1.14790 1.54110 1.79757 1.18653 1.04771 0.97731 1.01499 1.20736 0.93079 0.97872 0.94669 1.20503 1.04745 0.98349 1.00491 1.20923 0.94350 0.94426 0.97480 1.21159 1.01276 1.03278 0.99137 1.18986 0.87970 0.89810 0.89885 1.83672 1.40419 1.38376 1.44917 1.22312 1.15107 1.02513 1.15304 0.89553 1.26628 0.92527 1.03988 0.96184 1.70508 1.39729 1.21172 1.17890 0.83121 0.76792 0.72681 0.75509 1.20564 1.20593 1.19624 1.21804 1.00711 0.97224 0.82577 1.22598 0.82763 0.95636 0.95573 1.23017 1.02989 0.99102 0.92487 1.23112 1.01515 0.83427 0.94093 1.88456 1.95070 1.28889 1.17332 1.23899 1.01571 0.96013 0.82880 1.87747 1.18847 1.77478 1.43468 0.90484 0.91431 0.91624 0.90864 0.87359 0.86605 0.86937 0.86921 0.84857 0.90162 0.87748 0.90768 0.88704 0.88675 0.91143 0.91315 0.89286 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.57 37.16 0.36 -0.98 16 2 C 0.07 0.87 3.21 -26.58 -0.09 0.78 16 3 H 0.07 1.01 6.28 -51.93 -0.33 0.69 16 4 C 0.08 1.00 4.88 -3.53 -0.02 0.98 16 5 N -0.62 -10.33 2.97 -174.21 -0.52 -10.85 16 6 C 0.58 12.33 6.91 -12.47 -0.09 12.24 16 7 O -0.52 -13.21 16.19 -0.06 0.00 -13.21 16 8 C -0.22 -4.63 4.95 -104.81 -0.52 -5.15 16 9 C -0.04 -0.74 7.43 -39.20 -0.29 -1.03 16 10 C -0.22 -3.43 10.03 -39.60 -0.40 -3.83 16 11 C -0.05 -0.90 10.03 -39.54 -0.40 -1.29 16 12 C -0.23 -4.78 9.16 -39.44 -0.36 -5.14 16 13 C 0.19 4.56 6.64 -38.60 -0.26 4.30 16 14 O -0.17 -4.88 8.31 -4.53 -0.04 -4.92 16 15 C -0.48 -13.29 9.49 30.90 0.29 -12.99 16 16 H 0.09 2.22 5.21 -52.49 -0.27 1.94 16 17 C 0.01 0.41 5.49 -17.52 -0.10 0.32 16 18 N -0.86 -26.10 13.70 55.48 0.76 -25.34 16 19 Si 1.10 23.51 29.92 -169.99 -5.09 18.42 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 C 0.10 1.48 5.25 -4.17 -0.02 1.46 16 24 C 0.08 1.04 0.85 -89.87 -0.08 0.96 16 25 C -0.14 -1.50 6.20 -25.17 -0.16 -1.65 16 26 C 0.06 0.66 7.81 37.96 0.30 0.96 16 27 O -0.38 -6.18 11.36 -35.23 -0.40 -6.58 16 28 C 0.03 0.54 6.76 37.74 0.25 0.80 16 29 O -0.36 -4.85 9.93 -35.21 -0.35 -5.20 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.47 4.85 -51.93 -0.25 1.22 16 35 H 0.12 1.58 7.26 -52.49 -0.38 1.20 16 36 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 39 H 0.29 9.13 7.97 -40.82 -0.33 8.80 16 40 H 0.10 1.73 6.85 -51.93 -0.36 1.37 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 0.90 7.99 -51.93 -0.41 0.49 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.59 6.12 -51.93 -0.32 1.28 16 47 H 0.08 1.39 7.78 -51.93 -0.40 0.98 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -34.12 375.55 -7.90 -42.02 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.37 Total: 9.26 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.56 Total: -9.27 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.24 Total: -36.19 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.79 Total: -29.90 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.09 Total: 18.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.12 -7.90 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279929445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.529 kcal (2) G-P(sol) polarization free energy of solvation -34.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds