Wall clock time and date at job start Wed Apr 1 2020 04:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.55508 * 2 1 4 4 C 1.53285 * 109.51059 * 120.12134 * 2 1 3 5 5 N 1.47169 * 108.56910 * 172.95294 * 4 2 1 6 6 C 1.34779 * 121.07530 * 128.72767 * 5 4 2 7 7 O 1.21593 * 119.99644 * 175.99483 * 6 5 4 8 8 C 1.47534 * 120.00291 * 356.00312 * 6 5 4 9 9 C 1.39667 * 120.19680 * 52.51490 * 8 6 5 10 10 C 1.37835 * 119.91589 * 180.25246 * 9 8 6 11 11 C 1.38576 * 120.32239 * 359.79688 * 10 9 8 12 12 C 1.38022 * 120.40165 * 359.97438 * 11 10 9 13 13 C 1.38834 * 120.07561 * 359.97438 * 12 11 10 14 14 O 1.35511 * 120.16113 * 179.97438 * 13 12 11 15 15 C 1.34818 * 117.00390 * 5.91932 * 14 13 12 16 16 H 1.07996 * 119.99463 * 354.85442 * 15 14 13 17 17 C 1.38699 * 120.00022 * 174.85918 * 15 14 13 18 18 N 1.31517 * 120.00016 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99720 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46957 * 60.00062 * 19 17 15 21 21 H 1.48500 * 109.47338 * 299.99963 * 19 17 15 22 22 H 1.48501 * 109.46794 * 180.02562 * 19 17 15 23 23 C 1.47345 * 117.84006 * 309.00123 * 5 4 2 24 24 C 1.51847 * 108.64054 * 48.75809 * 23 5 4 25 25 C 1.54445 * 110.55114 * 186.44852 * 24 23 5 26 26 C 1.54528 * 102.16821 * 209.32255 * 25 24 23 27 27 O 1.43306 * 107.61199 * 20.64497 * 26 25 24 28 28 C 1.43813 * 110.01644 * 1.60109 * 27 26 25 29 29 O 1.41793 * 111.67845 * 310.34548 * 24 23 5 30 30 H 1.08996 * 109.47271 * 299.87666 * 1 2 3 31 31 H 1.09005 * 109.46842 * 59.88218 * 1 2 3 32 32 H 1.09005 * 109.46978 * 179.87204 * 1 2 3 33 33 H 1.09000 * 109.62060 * 53.23335 * 4 2 1 34 34 H 1.09000 * 109.62448 * 292.68064 * 4 2 1 35 35 H 1.07997 * 120.04522 * 0.02562 * 9 8 6 36 36 H 1.07997 * 119.83736 * 179.76387 * 10 9 8 37 37 H 1.08002 * 119.79489 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.96031 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99822 * 0.02562 * 18 17 15 40 40 H 1.09004 * 109.67809 * 168.55814 * 23 5 4 41 41 H 1.09002 * 109.67833 * 289.10083 * 23 5 4 42 42 H 1.09006 * 110.86269 * 327.49458 * 25 24 23 43 43 H 1.09005 * 110.86556 * 91.15132 * 25 24 23 44 44 H 1.08994 * 109.82960 * 261.11841 * 26 25 24 45 45 H 1.09005 * 109.90129 * 140.19991 * 26 25 24 46 46 H 1.08998 * 110.32195 * 217.57830 * 28 27 26 47 47 H 1.09000 * 110.31951 * 95.37765 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7251 1.2497 5 7 3.5035 -0.8627 1.1460 6 6 4.3120 -0.4739 2.1518 7 8 5.5108 -0.6632 2.0759 8 6 3.7427 0.1812 3.3448 9 6 2.6905 -0.4184 4.0406 10 6 2.1595 0.2012 5.1514 11 6 2.6673 1.4156 5.5849 12 6 3.7099 2.0176 4.9100 13 6 4.2580 1.4076 3.7897 14 8 5.2814 1.9973 3.1255 15 6 5.8037 3.1135 3.6724 16 1 5.3523 3.5452 4.5534 17 6 6.9206 3.7073 3.1034 18 7 7.4704 3.1812 2.0307 19 14 7.6437 5.2542 3.8607 20 1 8.0595 4.9733 5.2584 21 1 6.6223 6.3321 3.8553 22 1 8.8238 5.6872 3.0701 23 6 4.0545 -1.4337 -0.0956 24 6 3.4210 -0.7240 -1.2791 25 6 3.8448 -1.3950 -2.6040 26 6 3.7962 -0.2129 -3.5980 27 8 3.8761 0.9981 -2.8358 28 6 4.0096 0.6914 -1.4371 29 8 2.0083 -0.6772 -1.1669 30 1 -0.3633 0.5119 0.8910 31 1 -0.3633 0.5157 -0.8890 32 1 -0.3633 -1.0277 -0.0023 33 1 1.5849 -1.7126 1.3129 34 1 1.7911 -0.1452 2.1379 35 1 2.2910 -1.3646 3.7066 36 1 1.3434 -0.2617 5.6863 37 1 2.2445 1.8938 6.4561 38 1 4.0999 2.9642 5.2538 39 1 7.0947 2.3782 1.6373 40 1 5.1347 -1.2899 -0.1180 41 1 3.8243 -2.4981 -0.1438 42 1 4.8548 -1.7982 -2.5293 43 1 3.1357 -2.1720 -2.8899 44 1 2.8604 -0.2374 -4.1562 45 1 4.6390 -0.2724 -4.2868 46 1 3.4450 1.4054 -0.8375 47 1 5.0602 0.6991 -1.1466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279929445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:15 Heat of formation + Delta-G solvation = -136.518554 kcal Electronic energy + Delta-G solvation = -32561.585395 eV Core-core repulsion = 28288.692881 eV Total energy + Delta-G solvation = -4272.892514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.29513 -41.22015 -39.96680 -38.76810 -38.26054 -35.94476 -34.68884 -34.38891 -32.37392 -31.77532 -30.71705 -30.35380 -27.86437 -27.24698 -26.95885 -24.46430 -24.06247 -23.27542 -22.72515 -21.53853 -20.62753 -20.30800 -18.95267 -18.62877 -18.12373 -17.60529 -17.33312 -16.96190 -16.62294 -16.34980 -16.17920 -15.81868 -15.80718 -15.65038 -15.52497 -15.34298 -14.94962 -14.79587 -14.57735 -14.22758 -14.13918 -13.67848 -13.31280 -13.21354 -13.11576 -12.89454 -12.75047 -12.65539 -12.56707 -12.46963 -12.42425 -12.39229 -12.27968 -11.98411 -11.82686 -11.53433 -11.23185 -10.88729 -10.82833 -10.65195 -9.92877 -9.68462 -9.19322 -9.00068 -6.31029 0.10793 0.58507 1.43327 1.49725 1.57335 1.73864 1.82317 2.29256 2.30945 2.64267 2.75549 3.03646 3.16388 3.22017 3.38990 3.46049 3.55906 3.74557 3.88389 3.98541 4.00652 4.05747 4.16978 4.17485 4.23044 4.26198 4.39393 4.41825 4.45674 4.48755 4.53720 4.63649 4.71251 4.78339 4.79024 4.82853 4.94404 4.99333 4.99734 5.13508 5.23329 5.27979 5.40850 5.53397 5.59858 5.76689 5.95447 5.99975 6.15009 6.17034 6.79856 7.03256 7.55485 8.42624 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.004545 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.773759 B = 6158.964623 C = 7971.493997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.063 3.937 3 H 0.036 0.964 4 C 0.073 3.927 5 N -0.613 5.613 6 C 0.571 3.429 7 O -0.580 6.580 8 C -0.232 4.232 9 C -0.038 4.038 10 C -0.184 4.184 11 C -0.044 4.044 12 C -0.247 4.247 13 C 0.149 3.851 14 O -0.234 6.234 15 C -0.491 4.491 16 H 0.099 0.901 17 C -0.045 4.045 18 N -0.910 5.910 19 Si 1.146 2.854 20 H -0.257 1.257 21 H -0.254 1.254 22 H -0.276 1.276 23 C 0.097 3.903 24 C 0.084 3.916 25 C -0.127 4.127 26 C 0.044 3.956 27 O -0.404 6.404 28 C 0.034 3.966 29 O -0.350 6.350 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.157 0.843 36 H 0.170 0.830 37 H 0.157 0.843 38 H 0.123 0.877 39 H 0.256 0.744 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.101 -10.451 -2.684 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.005 3.995 3 H 0.054 0.946 4 C -0.049 4.049 5 N -0.347 5.347 6 C 0.362 3.638 7 O -0.460 6.460 8 C -0.237 4.237 9 C -0.056 4.056 10 C -0.203 4.203 11 C -0.062 4.062 12 C -0.266 4.266 13 C 0.097 3.903 14 O -0.140 6.140 15 C -0.566 4.566 16 H 0.116 0.884 17 C -0.242 4.242 18 N -0.544 5.544 19 Si 0.960 3.040 20 H -0.182 1.182 21 H -0.179 1.179 22 H -0.201 1.201 23 C -0.025 4.025 24 C 0.043 3.957 25 C -0.165 4.165 26 C -0.032 4.032 27 O -0.324 6.324 28 C -0.043 4.043 29 O -0.269 6.269 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.175 0.825 36 H 0.187 0.813 37 H 0.175 0.825 38 H 0.140 0.860 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.252 -9.377 -3.346 19.059 hybrid contribution -0.180 -0.780 0.256 0.840 sum -16.431 -10.157 -3.090 19.563 Atomic orbital electron populations 1.21703 0.88634 1.04641 1.03855 1.22760 0.97926 0.94342 0.84431 0.94634 1.22957 0.78001 1.03745 1.00189 1.48147 1.07946 1.62911 1.15661 1.18558 0.85325 0.76500 0.83434 1.90750 1.17376 1.56708 1.81140 1.19074 1.05750 0.96944 1.01902 1.21248 0.91193 0.98957 0.94231 1.21223 1.03910 0.96627 0.98501 1.21453 0.92217 0.94710 0.97777 1.21315 1.02935 1.03421 0.98955 1.19765 0.87729 0.91446 0.91407 1.83685 1.43443 1.39688 1.47163 1.22680 1.15393 1.02940 1.15620 0.88404 1.28533 0.93043 1.06813 0.95810 1.70668 1.41488 1.21422 1.20793 0.82615 0.76435 0.69404 0.75510 1.18187 1.17855 1.20113 1.21963 0.99344 0.99095 0.82146 1.22519 0.82911 0.93539 0.96731 1.23085 1.04517 0.99054 0.89812 1.23444 1.03238 0.82294 0.94189 1.88424 1.95101 1.31722 1.17109 1.23707 0.99461 0.97897 0.83261 1.87767 1.18115 1.77137 1.43892 0.88937 0.91480 0.89508 0.86936 0.87433 0.82528 0.81282 0.82531 0.85970 0.93547 0.90592 0.87237 0.87513 0.85609 0.89425 0.89613 0.91874 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.57 71.98 0.69 -1.38 16 2 C 0.06 1.54 3.21 30.69 0.10 1.64 16 3 H 0.04 1.10 6.28 -2.39 -0.01 1.09 16 4 C 0.07 1.75 4.88 86.35 0.42 2.17 16 5 N -0.61 -20.56 2.97 -823.33 -2.45 -23.01 16 6 C 0.57 25.46 6.91 86.69 0.60 26.06 16 7 O -0.58 -32.21 16.19 1.10 0.02 -32.20 16 8 C -0.23 -9.78 4.95 -19.99 -0.10 -9.88 16 9 C -0.04 -1.11 7.43 22.52 0.17 -0.94 16 10 C -0.18 -4.55 10.03 22.25 0.22 -4.32 16 11 C -0.04 -1.28 10.03 22.30 0.22 -1.06 16 12 C -0.25 -10.29 9.16 22.36 0.20 -10.08 16 13 C 0.15 7.48 6.64 22.91 0.15 7.63 16 14 O -0.23 -14.52 8.31 -14.89 -0.12 -14.65 16 15 C -0.49 -29.58 9.49 67.93 0.64 -28.93 16 16 H 0.10 5.35 5.21 -2.91 -0.02 5.33 16 17 C -0.05 -2.72 5.49 84.85 0.47 -2.25 16 18 N -0.91 -60.78 13.70 21.62 0.30 -60.48 16 19 Si 1.15 49.81 29.92 68.60 2.05 51.86 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 21 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.10 2.91 5.25 85.84 0.45 3.36 16 24 C 0.08 2.33 0.85 -10.31 -0.01 2.32 16 25 C -0.13 -2.55 6.20 31.60 0.20 -2.36 16 26 C 0.04 1.02 7.81 72.50 0.57 1.59 16 27 O -0.40 -13.94 11.36 -148.98 -1.69 -15.63 16 28 C 0.03 1.23 6.76 72.36 0.49 1.72 16 29 O -0.35 -8.93 9.93 -148.92 -1.48 -10.41 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 2.59 4.85 -2.39 -0.01 2.58 16 35 H 0.16 3.33 7.26 -2.91 -0.02 3.30 16 36 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 39 H 0.26 18.40 7.97 -92.71 -0.74 17.66 16 40 H 0.08 2.75 6.85 -2.38 -0.02 2.73 16 41 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.11 1.90 7.99 -2.38 -0.02 1.89 16 43 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.06 2.57 6.12 -2.39 -0.01 2.56 16 47 H 0.04 1.84 7.78 -2.39 -0.02 1.82 16 Total: -1.00 -89.33 375.55 3.14 -86.20 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 1.03 Total: 33.01 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 5.48 Total: -14.70 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -2.15 Total: -83.49 kcal Atomic # 8 Polarization: -69.61 SS G_CDS: -3.28 Total: -72.89 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -89.33 3.14 -86.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279929445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.321 kcal (2) G-P(sol) polarization free energy of solvation -89.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds