Wall clock time and date at job start Wed Apr 1 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47316 * 180.02562 * 17 16 14 19 19 O 1.21303 * 119.99762 * 0.02562 * 18 17 16 20 20 C 1.46859 * 120.00542 * 180.02562 * 18 17 16 21 21 C 1.40012 * 120.12302 * 359.72560 * 20 18 17 22 22 C 1.37601 * 119.93624 * 179.75140 * 21 20 18 23 23 C 1.39105 * 120.30724 * 0.59683 * 22 21 20 24 24 C 1.39350 * 120.08859 * 359.60010 * 23 22 21 25 25 C 1.38179 * 119.98194 * 0.12315 * 24 23 22 26 26 O 1.36150 * 120.75509 * 180.27166 * 24 23 22 27 27 C 1.43164 * 116.70706 * 342.86579 * 26 24 23 28 28 C 1.53471 * 108.23162 * 46.14084 * 27 26 24 29 29 O 1.35923 * 119.21247 * 179.51220 * 23 22 21 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 35 35 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 36 36 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 37 37 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 38 38 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 39 39 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 40 40 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 41 41 H 1.07996 * 120.03005 * 0.02713 * 21 20 18 42 42 H 1.08004 * 119.84891 * 180.29550 * 22 21 20 43 43 H 1.08009 * 120.02919 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.71062 * 165.81789 * 27 26 24 45 45 H 1.09002 * 109.71107 * 286.45499 * 27 26 24 46 46 H 1.08988 * 109.70900 * 59.84897 * 28 27 26 47 47 H 1.09001 * 109.70477 * 180.47693 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6486 -0.4945 -5.3767 19 8 4.3548 -1.6556 -5.5691 20 6 5.4936 0.2189 -6.3429 21 6 5.8295 1.5608 -6.1262 22 6 6.6258 2.2241 -7.0314 23 6 7.0896 1.5713 -8.1689 24 6 6.7561 0.2371 -8.3935 25 6 5.9617 -0.4382 -7.4867 26 8 7.2071 -0.4166 -9.4994 27 6 7.6944 0.3956 -10.5729 28 6 8.6220 1.4661 -9.9823 29 8 7.8665 2.2508 -9.0533 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.7089 1.1611 3.4845 34 1 0.7376 -2.1442 -1.9996 35 1 2.4629 -2.5817 -1.9866 36 1 1.5295 -2.5968 -0.4711 37 1 3.9016 -1.6021 -3.0168 38 1 2.4483 -1.0887 -3.9070 39 1 3.5409 1.0721 -4.4431 40 1 4.9938 0.5582 -3.5525 41 1 5.4677 2.0734 -5.2473 42 1 6.8880 3.2578 -6.8605 43 1 5.7025 -1.4723 -7.6603 44 1 8.2490 -0.2224 -11.2790 45 1 6.8572 0.8743 -11.0810 46 1 9.4547 0.9873 -9.4672 47 1 9.0009 2.1049 -10.7801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349371746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:37 Heat of formation + Delta-G solvation = -119.008884 kcal Electronic energy + Delta-G solvation = -29512.254443 eV Core-core repulsion = 25240.121204 eV Total energy + Delta-G solvation = -4272.133238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70499 -39.95813 -38.88830 -37.73366 -37.50518 -35.35333 -33.09253 -32.60129 -31.67823 -31.11334 -29.62677 -28.98912 -26.22464 -25.86287 -25.24620 -25.07889 -23.04184 -22.17855 -20.83736 -19.77231 -19.03019 -18.22412 -17.68657 -17.62528 -16.61645 -16.23396 -16.03805 -15.90258 -15.67219 -15.44671 -15.11200 -14.87831 -14.77937 -14.42817 -14.25413 -14.19353 -13.81075 -13.68092 -13.11255 -12.91280 -12.66197 -12.43243 -12.29987 -12.08222 -11.84800 -11.58074 -11.52865 -11.51284 -11.30156 -11.07560 -10.97307 -10.93806 -10.80578 -10.65766 -10.23716 -10.14539 -9.81972 -9.16626 -9.07820 -8.89529 -8.51773 -8.40072 -7.54972 -6.05250 -4.13102 0.33133 0.94008 2.14640 2.55075 2.70938 3.29394 3.34334 3.35441 3.41199 3.44138 3.67959 3.75776 4.13334 4.18366 4.28678 4.37831 4.42831 4.62913 4.76714 4.80808 4.91289 4.96899 4.99164 5.21379 5.24244 5.25785 5.36132 5.50540 5.68229 5.71240 5.79028 5.90206 5.96184 6.00867 6.11939 6.12982 6.14348 6.41115 6.43726 6.78493 6.86891 6.92844 7.09924 7.42038 7.46050 7.56748 7.74414 8.04221 8.22880 8.57423 8.85337 9.08922 9.53209 10.99958 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.001790 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.659020 B =15637.288639 C =15945.810981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.082 3.918 14 C 0.503 3.497 15 O -0.558 6.558 16 C -0.131 4.131 17 C -0.148 4.148 18 C 0.401 3.599 19 O -0.453 6.453 20 C -0.165 4.165 21 C -0.062 4.062 22 C -0.127 4.127 23 C 0.080 3.920 24 C 0.033 3.967 25 C -0.054 4.054 26 O -0.306 6.306 27 C 0.020 3.980 28 C 0.019 3.981 29 O -0.304 6.304 30 H 0.010 0.990 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.263 0.737 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.698 -0.125 -26.086 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.290 3.710 15 O -0.438 6.438 16 C -0.171 4.171 17 C -0.186 4.186 18 C 0.279 3.721 19 O -0.329 6.329 20 C -0.166 4.166 21 C -0.080 4.080 22 C -0.145 4.145 23 C 0.034 3.966 24 C -0.012 4.012 25 C -0.073 4.073 26 O -0.221 6.221 27 C -0.056 4.056 28 C -0.057 4.057 29 O -0.218 6.218 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.141 0.859 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.619 -0.017 -25.966 28.870 hybrid contribution 0.470 -0.508 0.587 0.908 sum 13.089 -0.525 -25.379 28.560 Atomic orbital electron populations 1.22078 0.98244 0.99379 1.00731 1.18931 0.90859 0.94545 0.80001 0.91881 1.21292 1.31819 1.12998 0.90341 0.92304 1.24901 0.94976 0.95003 0.98959 1.69874 1.36323 1.22577 1.23818 0.86551 0.79225 0.79572 0.81997 1.21195 1.20253 1.20262 1.48235 1.48887 1.11695 1.23522 1.21622 0.98969 0.83257 1.02326 1.20361 0.79214 0.87105 0.84335 1.90632 1.58787 1.17199 1.77164 1.21479 1.00973 0.99180 0.95453 1.21763 1.02157 1.00028 0.94615 1.22441 0.76618 0.87312 0.85699 1.90530 1.49770 1.17780 1.74792 1.20293 1.03630 0.95372 0.97299 1.21368 0.94936 0.92921 0.98760 1.20444 1.00977 1.01466 0.91638 1.19272 0.94806 0.90820 0.91707 1.18724 1.00643 0.91413 0.90403 1.20645 0.93746 1.00986 0.91925 1.86356 1.78071 1.33807 1.23819 1.23651 0.98654 0.94517 0.88755 1.23696 0.93619 0.95094 0.93248 1.86287 1.56839 1.34193 1.44466 0.97055 0.95192 0.88894 0.92658 0.93873 0.92564 0.90163 0.88853 0.89012 0.87381 0.87287 0.83293 0.83930 0.83643 0.85858 0.90328 0.90161 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.59 2.64 -69.09 -0.18 6.41 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -14.25 7.99 -34.44 -0.28 -14.53 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.59 -12.71 2.75 -175.26 -0.48 -13.19 16 13 C 0.08 1.42 9.24 59.85 0.55 1.97 16 14 C 0.50 10.17 7.67 -10.99 -0.08 10.09 16 15 O -0.56 -13.13 15.31 5.56 0.09 -13.04 16 16 C -0.13 -1.96 3.54 -27.89 -0.10 -2.06 16 17 C -0.15 -1.89 3.59 -27.89 -0.10 -1.99 16 18 C 0.40 4.98 7.11 -30.82 -0.22 4.77 16 19 O -0.45 -6.69 15.97 5.54 0.09 -6.60 16 20 C -0.16 -1.82 5.87 -105.09 -0.62 -2.44 16 21 C -0.06 -0.58 9.46 -39.15 -0.37 -0.95 16 22 C -0.13 -1.16 9.94 -39.49 -0.39 -1.55 16 23 C 0.08 0.79 6.51 -38.85 -0.25 0.54 16 24 C 0.03 0.35 6.48 -39.19 -0.25 0.09 16 25 C -0.05 -0.61 9.50 -38.95 -0.37 -0.98 16 26 O -0.31 -2.91 10.41 -32.95 -0.34 -3.26 16 27 C 0.02 0.11 7.26 37.40 0.27 0.38 16 28 C 0.02 0.10 7.25 37.40 0.27 0.37 16 29 O -0.30 -2.65 10.40 -32.23 -0.34 -2.99 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.81 6.44 -51.92 -0.33 0.48 16 36 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 37 H 0.09 1.34 7.36 -51.93 -0.38 0.96 16 38 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 39 H 0.11 1.31 8.03 -51.93 -0.42 0.89 16 40 H 0.11 1.35 8.05 -51.93 -0.42 0.94 16 41 H 0.15 1.17 7.04 -52.49 -0.37 0.80 16 42 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 43 H 0.15 1.64 7.64 -52.48 -0.40 1.24 16 44 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.38 8.14 -51.94 -0.42 -0.04 16 47 H 0.12 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -33.95 388.17 -8.07 -42.02 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.66 Total: 1.08 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.88 Total: -1.42 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.15 Total: -37.73 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.51 Total: -25.88 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.95 -8.07 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349371746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.992 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds