Wall clock time and date at job start Wed Apr 1 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.50698 * 109.47316 * 180.02562 * 17 16 14 19 19 O 1.21303 * 119.99762 * 0.02562 * 18 17 16 20 20 C 1.46859 * 120.00542 * 180.02562 * 18 17 16 21 21 C 1.40012 * 120.12302 * 359.72560 * 20 18 17 22 22 C 1.37601 * 119.93624 * 179.75140 * 21 20 18 23 23 C 1.39105 * 120.30724 * 0.59683 * 22 21 20 24 24 C 1.39350 * 120.08859 * 359.60010 * 23 22 21 25 25 C 1.38179 * 119.98194 * 0.12315 * 24 23 22 26 26 O 1.36150 * 120.75509 * 180.27166 * 24 23 22 27 27 C 1.43164 * 116.70706 * 342.86579 * 26 24 23 28 28 C 1.53471 * 108.23162 * 46.14084 * 27 26 24 29 29 O 1.35923 * 119.21247 * 179.51220 * 23 22 21 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 33 33 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 34 34 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 35 35 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 36 36 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 37 37 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 38 38 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 39 39 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 40 40 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 41 41 H 1.07996 * 120.03005 * 0.02713 * 21 20 18 42 42 H 1.08004 * 119.84891 * 180.29550 * 22 21 20 43 43 H 1.08009 * 120.02919 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.71062 * 165.81789 * 27 26 24 45 45 H 1.09002 * 109.71107 * 286.45499 * 27 26 24 46 46 H 1.08988 * 109.70900 * 59.84897 * 28 27 26 47 47 H 1.09001 * 109.70477 * 180.47693 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6486 -0.4945 -5.3767 19 8 4.3548 -1.6556 -5.5691 20 6 5.4936 0.2189 -6.3429 21 6 5.8295 1.5608 -6.1262 22 6 6.6258 2.2241 -7.0314 23 6 7.0896 1.5713 -8.1689 24 6 6.7561 0.2371 -8.3935 25 6 5.9617 -0.4382 -7.4867 26 8 7.2071 -0.4166 -9.4994 27 6 7.6944 0.3956 -10.5729 28 6 8.6220 1.4661 -9.9823 29 8 7.8665 2.2508 -9.0533 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.7089 1.1611 3.4845 34 1 0.7376 -2.1442 -1.9996 35 1 2.4629 -2.5817 -1.9866 36 1 1.5295 -2.5968 -0.4711 37 1 3.9016 -1.6021 -3.0168 38 1 2.4483 -1.0887 -3.9070 39 1 3.5409 1.0721 -4.4431 40 1 4.9938 0.5582 -3.5525 41 1 5.4677 2.0734 -5.2473 42 1 6.8880 3.2578 -6.8605 43 1 5.7025 -1.4723 -7.6603 44 1 8.2490 -0.2224 -11.2790 45 1 6.8572 0.8743 -11.0810 46 1 9.4547 0.9873 -9.4672 47 1 9.0009 2.1049 -10.7801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349371746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:36 Heat of formation + Delta-G solvation = -139.604138 kcal Electronic energy + Delta-G solvation = -29513.147520 eV Core-core repulsion = 25240.121204 eV Total energy + Delta-G solvation = -4273.026315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.35371 -41.08727 -40.32797 -38.36925 -38.28705 -37.14282 -34.83474 -33.95956 -32.42350 -31.84963 -31.27499 -29.84730 -27.58908 -27.30602 -26.96948 -25.89228 -23.97723 -22.99949 -22.37074 -20.63312 -19.87764 -19.62952 -18.61579 -18.37056 -18.32408 -17.65779 -17.20820 -16.99441 -16.73255 -16.47400 -16.10821 -15.85886 -15.78410 -15.68656 -15.45814 -14.96971 -14.78827 -14.54911 -14.33990 -14.21103 -14.12756 -13.62133 -13.52954 -13.48424 -13.21175 -12.94801 -12.85804 -12.73148 -12.61161 -12.51806 -12.23033 -12.17712 -12.12564 -12.07196 -12.04424 -11.54784 -11.17897 -10.83122 -10.63153 -10.43551 -9.81701 -9.29021 -9.24285 -8.12659 -6.28876 -0.49049 0.19774 1.27939 1.42755 1.44841 1.52223 1.84866 1.94714 2.13558 2.33297 2.50201 2.62818 3.05341 3.14943 3.17127 3.56725 3.66321 3.91266 3.96697 4.00040 4.04449 4.11525 4.15158 4.25726 4.35686 4.47273 4.56406 4.58426 4.68028 4.74050 4.75795 4.79556 4.89552 4.93574 4.98164 4.99745 5.04357 5.06768 5.11469 5.20735 5.43326 5.50007 5.62694 5.69928 5.79679 6.06292 6.19244 6.27368 6.46306 6.78797 6.87510 7.34203 7.51344 8.91348 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.001790 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.659020 B =15637.288639 C =15945.810981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.264 1.264 11 H -0.277 1.277 12 N -0.603 5.603 13 C 0.080 3.920 14 C 0.495 3.505 15 O -0.598 6.598 16 C -0.117 4.117 17 C -0.145 4.145 18 C 0.413 3.587 19 O -0.481 6.481 20 C -0.178 4.178 21 C -0.057 4.057 22 C -0.130 4.130 23 C 0.079 3.921 24 C 0.025 3.975 25 C -0.067 4.067 26 O -0.324 6.324 27 C 0.012 3.988 28 C 0.013 3.987 29 O -0.314 6.314 30 H 0.020 0.980 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.264 0.736 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.137 0.863 44 H 0.155 0.845 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.887 -0.893 -27.551 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.031 0.969 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.209 1.209 10 H -0.189 1.189 11 H -0.202 1.202 12 N -0.333 5.333 13 C -0.063 4.063 14 C 0.285 3.715 15 O -0.481 6.481 16 C -0.157 4.157 17 C -0.182 4.182 18 C 0.294 3.706 19 O -0.358 6.358 20 C -0.179 4.179 21 C -0.075 4.075 22 C -0.148 4.148 23 C 0.033 3.967 24 C -0.020 4.020 25 C -0.086 4.086 26 O -0.240 6.240 27 C -0.062 4.062 28 C -0.061 4.061 29 O -0.228 6.228 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.181 0.819 42 H 0.180 0.820 43 H 0.155 0.845 44 H 0.172 0.828 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.813 -0.811 -27.468 30.756 hybrid contribution 0.176 -0.203 0.905 0.944 sum 13.990 -1.014 -26.563 30.039 Atomic orbital electron populations 1.21867 0.97300 0.99959 0.99913 1.18534 0.91546 0.92387 0.81729 0.96926 1.21559 1.31885 1.13070 0.91215 0.92168 1.25740 0.95135 0.95689 1.02000 1.70016 1.37257 1.23827 1.24440 0.85519 0.78427 0.78919 0.78199 1.20914 1.18886 1.20229 1.48259 1.49190 1.13334 1.22560 1.21829 1.01196 0.80773 1.02477 1.21246 0.78211 0.86804 0.85258 1.90606 1.60028 1.19216 1.78242 1.21420 1.01873 0.99263 0.93137 1.21746 1.02100 0.99817 0.94556 1.22393 0.76062 0.86767 0.85422 1.90521 1.51072 1.18810 1.75406 1.20181 1.04375 0.96062 0.97279 1.21531 0.94481 0.92238 0.99225 1.20715 1.00477 1.02325 0.91266 1.19441 0.94656 0.90582 0.92066 1.18781 1.00659 0.91743 0.90809 1.20656 0.94553 1.00839 0.92537 1.86324 1.78171 1.35171 1.24311 1.24012 0.99137 0.95011 0.88048 1.24043 0.93091 0.95569 0.93432 1.86273 1.56787 1.35065 1.44716 0.96091 0.93726 0.91433 0.92656 0.91765 0.89463 0.91362 0.87692 0.87355 0.86645 0.86945 0.81864 0.82010 0.84482 0.82762 0.90000 0.89871 0.82393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.97 71.98 0.65 -5.79 16 2 C 0.26 13.64 2.64 44.24 0.12 13.76 16 3 H 0.01 0.79 6.90 -2.39 -0.02 0.78 16 4 C -0.54 -29.49 7.99 25.60 0.20 -29.28 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 8 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.60 -25.70 2.75 -826.80 -2.28 -27.97 16 13 C 0.08 2.60 9.24 127.77 1.18 3.78 16 14 C 0.50 19.94 7.67 87.66 0.67 20.61 16 15 O -0.60 -28.77 15.31 -3.03 -0.05 -28.81 16 16 C -0.12 -3.34 3.54 29.85 0.11 -3.24 16 17 C -0.14 -3.54 3.59 29.84 0.11 -3.43 16 18 C 0.41 9.95 7.11 27.94 0.20 10.15 16 19 O -0.48 -13.84 15.97 -3.10 -0.05 -13.89 16 20 C -0.18 -3.84 5.87 -20.17 -0.12 -3.96 16 21 C -0.06 -1.00 9.46 22.55 0.21 -0.79 16 22 C -0.13 -2.18 9.94 22.33 0.22 -1.96 16 23 C 0.08 1.47 6.51 22.75 0.15 1.62 16 24 C 0.02 0.51 6.48 22.52 0.15 0.66 16 25 C -0.07 -1.51 9.50 22.68 0.22 -1.29 16 26 O -0.32 -5.92 10.41 -83.08 -0.87 -6.78 16 27 C 0.01 0.11 7.26 72.14 0.52 0.63 16 28 C 0.01 0.10 7.25 72.14 0.52 0.63 16 29 O -0.31 -4.91 10.40 -80.51 -0.84 -5.75 16 30 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.04 1.99 7.67 -2.39 -0.02 1.97 16 32 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 33 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.29 6.44 -2.38 -0.02 2.27 16 36 H 0.07 2.39 7.02 -2.39 -0.02 2.38 16 37 H 0.10 2.79 7.36 -2.39 -0.02 2.77 16 38 H 0.11 2.77 8.06 -2.39 -0.02 2.75 16 39 H 0.12 2.67 8.03 -2.39 -0.02 2.65 16 40 H 0.11 2.70 8.05 -2.39 -0.02 2.68 16 41 H 0.16 2.34 7.04 -2.91 -0.02 2.32 16 42 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.14 3.21 7.64 -2.91 -0.02 3.18 16 44 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -75.46 388.17 4.74 -70.72 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.99 Total: 16.65 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.55 Total: 3.31 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -2.03 Total: -80.76 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -1.80 Total: -55.23 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -75.46 4.74 -70.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349371746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.883 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds