Wall clock time and date at job start Wed Apr 1 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47562 * 2 1 4 4 C 1.42897 * 114.00622 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55873 * 4.30901 * 4 3 2 6 6 C 1.53068 * 117.51641 * 218.60908 * 4 3 2 7 7 C 1.53002 * 59.98598 * 252.51750 * 6 4 3 8 8 H 1.09004 * 117.50133 * 252.50198 * 7 6 4 9 9 N 1.46495 * 117.49905 * 107.49463 * 7 6 4 10 10 C 1.34776 * 119.99799 * 136.25975 * 9 7 6 11 11 O 1.21726 * 120.00197 * 359.97438 * 10 9 7 12 12 C 1.46258 * 120.00035 * 180.02562 * 10 9 7 13 13 C 1.35026 * 119.99875 * 179.97438 * 12 10 9 14 14 C 1.46965 * 119.99687 * 179.97438 * 13 12 10 15 15 C 1.40029 * 120.08067 * 359.97438 * 14 13 12 16 16 C 1.37643 * 119.99881 * 180.27736 * 15 14 13 17 17 C 1.39059 * 120.16212 * 359.49027 * 16 15 14 18 18 O 1.35617 * 119.92461 * 180.25519 * 17 16 15 19 19 C 1.34773 * 116.99567 * 354.38670 * 18 17 16 20 20 H 1.07992 * 120.00036 * 5.06358 * 19 18 17 21 21 C 1.38709 * 119.99530 * 185.06129 * 19 18 17 22 22 N 1.31522 * 119.99679 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00210 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47253 * 90.00045 * 23 21 19 25 25 H 1.48503 * 109.46822 * 210.00038 * 23 21 19 26 26 H 1.48498 * 109.47075 * 329.99832 * 23 21 19 27 27 C 1.39614 * 120.15894 * 0.51051 * 17 16 15 28 28 O 1.35956 * 120.00569 * 179.76902 * 27 17 16 29 29 C 1.42898 * 117.00449 * 179.97438 * 28 27 17 30 30 C 1.38080 * 119.99804 * 359.74442 * 27 17 16 31 31 H 1.09000 * 109.46667 * 60.00077 * 1 2 3 32 32 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46781 * 300.00340 * 1 2 3 34 34 H 1.08997 * 109.47501 * 239.99587 * 2 1 3 35 35 H 1.09008 * 109.47166 * 119.99589 * 2 1 3 36 36 H 1.09000 * 117.49901 * 145.03455 * 6 4 3 37 37 H 1.08998 * 117.51498 * 359.97438 * 6 4 3 38 38 H 0.96998 * 120.00265 * 316.25978 * 9 7 6 39 39 H 1.07996 * 120.00140 * 359.97438 * 12 10 9 40 40 H 1.08001 * 120.00440 * 359.97438 * 13 12 10 41 41 H 1.07991 * 119.99756 * 0.02562 * 15 14 13 42 42 H 1.08004 * 119.91924 * 179.72807 * 16 15 14 43 43 H 0.96999 * 119.99939 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.46995 * 180.02562 * 29 28 27 45 45 H 1.09009 * 109.46817 * 299.99893 * 29 28 27 46 46 H 1.08996 * 109.47098 * 59.99790 * 29 28 27 47 47 H 1.08001 * 120.08318 * 180.02562 * 30 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9772 0.5197 -0.0729 6 6 4.0518 2.5735 0.8478 7 6 4.0428 2.6874 -0.6780 8 1 4.9913 2.5543 -1.1982 9 7 3.1233 3.6568 -1.2785 10 6 3.5429 4.4502 -2.2839 11 8 4.6861 4.3616 -2.6927 12 6 2.6251 5.4186 -2.8832 13 6 3.0457 6.2138 -3.8901 14 6 2.1233 7.1864 -4.4926 15 6 0.8077 7.2894 -4.0241 16 6 -0.0565 8.1969 -4.5935 17 6 0.3764 9.0205 -5.6270 18 8 -0.4777 9.9165 -6.1810 19 6 -1.7592 9.8779 -5.7654 20 1 -2.0477 9.2120 -4.9657 21 6 -2.7075 10.6935 -6.3650 22 7 -3.9581 10.6555 -5.9599 23 14 -2.2085 11.8449 -7.7488 24 1 -2.3498 11.1446 -9.0506 25 1 -3.0838 13.0444 -7.7345 26 1 -0.7954 12.2609 -7.5613 27 6 1.6866 8.9234 -6.0993 28 8 2.1052 9.7269 -7.1130 29 6 3.4585 9.5740 -7.5456 30 6 2.5576 8.0117 -5.5365 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 5.0062 2.3654 1.3313 37 1 3.3736 3.2203 1.4044 38 1 2.2124 3.7278 -0.9526 39 1 1.6110 5.4975 -2.5204 40 1 4.0600 6.1352 -4.2528 41 1 0.4700 6.6540 -3.2189 42 1 -1.0722 8.2722 -4.2341 43 1 -4.6212 11.2261 -6.3789 44 1 3.6618 10.2731 -8.3568 45 1 4.1314 9.7787 -6.7128 46 1 3.6146 8.5541 -7.8968 47 1 3.5716 7.9358 -5.9005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493122960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:23 Heat of formation + Delta-G solvation = -70.168993 kcal Electronic energy + Delta-G solvation = -28714.548460 eV Core-core repulsion = 24444.533078 eV Total energy + Delta-G solvation = -4270.015382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.99466 -39.78434 -38.62173 -37.85567 -36.73055 -36.02419 -33.13706 -32.73870 -32.34426 -31.04876 -29.84196 -28.85055 -26.74292 -25.56390 -23.94747 -23.28762 -22.51565 -22.13390 -21.61351 -20.78212 -19.38703 -18.15550 -17.95270 -17.54517 -17.23277 -16.28847 -15.93081 -15.72176 -15.59305 -15.36121 -14.98854 -14.68449 -14.59705 -14.15484 -14.00464 -13.95532 -13.80027 -13.41807 -13.20088 -13.03857 -12.77875 -12.51173 -12.40978 -12.31971 -11.95589 -11.94198 -11.68990 -11.59456 -11.50744 -11.26909 -11.09617 -10.98346 -10.88619 -10.73729 -10.29911 -9.90460 -9.65144 -9.59409 -9.46506 -8.92277 -8.76613 -8.08211 -7.05193 -6.58026 -4.17831 0.93252 2.00781 2.42164 2.88478 3.16790 3.20985 3.23621 3.34616 3.39372 3.72561 3.78703 4.15526 4.38077 4.46032 4.50917 4.57486 4.62307 4.69124 4.85093 4.93646 4.95878 4.98096 5.08085 5.17075 5.29548 5.39186 5.41033 5.42555 5.45227 5.50932 5.52561 5.65157 5.69432 5.71749 5.76852 5.88698 6.07023 6.30593 6.35574 6.40351 6.52099 6.76919 6.83386 6.91602 7.15876 7.32255 7.50155 7.54007 7.78995 7.98639 8.29271 8.75649 9.37543 10.47745 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.001992 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.256180 B =14051.565521 C =15882.757885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.009 3.991 5 H 0.115 0.885 6 C -0.201 4.201 7 C 0.088 3.912 8 H 0.141 0.859 9 N -0.696 5.696 10 C 0.559 3.441 11 O -0.559 6.559 12 C -0.270 4.270 13 C 0.032 3.968 14 C -0.156 4.156 15 C -0.063 4.063 16 C -0.209 4.209 17 C 0.155 3.845 18 O -0.189 6.189 19 C -0.388 4.388 20 H 0.111 0.889 21 C 0.067 3.933 22 N -0.866 5.866 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.254 1.254 27 C 0.051 3.949 28 O -0.309 6.309 29 C 0.029 3.971 30 C -0.136 4.136 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.408 0.592 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.144 0.856 43 H 0.283 0.717 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.049 0.951 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.929 -16.826 9.853 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.273 6.273 4 C -0.051 4.051 5 H 0.133 0.867 6 C -0.240 4.240 7 C -0.019 4.019 8 H 0.158 0.842 9 N -0.345 5.345 10 C 0.352 3.648 11 O -0.440 6.440 12 C -0.291 4.291 13 C 0.012 3.988 14 C -0.157 4.157 15 C -0.081 4.081 16 C -0.229 4.229 17 C 0.100 3.900 18 O -0.092 6.092 19 C -0.462 4.462 20 H 0.128 0.872 21 C -0.139 4.139 22 N -0.502 5.502 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.178 1.178 27 C 0.006 3.994 28 O -0.223 6.223 29 C -0.066 4.066 30 C -0.155 4.155 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.243 0.757 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.161 0.839 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.234 -16.281 9.241 22.926 hybrid contribution -0.169 0.054 -0.114 0.211 sum 13.064 -16.227 9.127 22.744 Atomic orbital electron populations 1.21765 0.93391 1.02482 1.03446 1.22549 0.95741 0.83172 1.00190 1.87798 1.18352 1.27058 1.94141 1.23305 0.82597 0.94598 1.04624 0.86703 1.24023 1.02950 1.02144 0.94863 1.22077 0.95978 0.91217 0.92654 0.84174 1.45082 1.15201 1.37699 1.36529 1.18408 0.87487 0.80280 0.78650 1.90762 1.20049 1.70325 1.62865 1.22486 1.00492 1.02354 1.03721 1.22233 0.97667 0.88734 0.90186 1.18243 0.94417 1.01648 1.01370 1.20996 0.92126 0.96895 0.98104 1.20977 1.01857 1.00145 0.99885 1.18622 0.87827 0.90447 0.93079 1.83591 1.19925 1.47246 1.58427 1.20908 0.79848 1.25559 1.19934 0.87175 1.24522 0.93812 0.97358 0.98186 1.69624 1.01117 1.38255 1.41158 0.86162 0.79989 0.79647 0.81218 1.19635 1.20628 1.17762 1.18033 0.92011 0.96059 0.93256 1.86175 1.28720 1.58036 1.49373 1.22935 0.82259 1.01816 0.99620 1.20896 0.98601 0.97498 0.98547 0.91533 0.90933 0.91745 0.93093 0.93205 0.87417 0.87749 0.75685 0.85562 0.85810 0.86283 0.83863 0.90664 0.88951 0.93265 0.93240 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.40 6.53 37.16 0.24 0.64 16 3 O -0.36 -3.21 10.03 -35.23 -0.35 -3.56 16 4 C 0.01 0.07 6.44 -26.69 -0.17 -0.11 16 5 H 0.12 0.66 7.93 -51.93 -0.41 0.24 16 6 C -0.20 -1.53 10.41 -26.69 -0.28 -1.80 16 7 C 0.09 0.86 6.43 -67.93 -0.44 0.42 16 8 H 0.14 1.45 7.40 -51.93 -0.38 1.07 16 9 N -0.70 -7.89 5.46 -55.25 -0.30 -8.19 16 10 C 0.56 7.92 7.74 -13.04 -0.10 7.82 16 11 O -0.56 -9.57 15.80 5.17 0.08 -9.49 16 12 C -0.27 -3.69 9.41 -37.50 -0.35 -4.04 16 13 C 0.03 0.47 9.45 -37.19 -0.35 0.12 16 14 C -0.16 -2.59 5.87 -105.04 -0.62 -3.21 16 15 C -0.06 -1.09 9.40 -39.13 -0.37 -1.45 16 16 C -0.21 -4.28 9.14 -39.49 -0.36 -4.64 16 17 C 0.16 3.53 6.67 -38.76 -0.26 3.27 16 18 O -0.19 -4.93 8.35 -14.00 -0.12 -5.04 16 19 C -0.39 -10.53 9.94 30.91 0.31 -10.22 16 20 H 0.11 3.00 5.42 -52.49 -0.28 2.71 16 21 C 0.07 1.81 5.49 -17.51 -0.10 1.72 16 22 N -0.87 -24.05 13.96 55.48 0.77 -23.28 16 23 Si 0.91 21.30 28.62 -169.99 -4.86 16.43 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.05 1.03 6.70 -39.13 -0.26 0.77 16 28 O -0.31 -6.04 10.28 -34.22 -0.35 -6.39 16 29 C 0.03 0.39 9.81 101.05 0.99 1.38 16 30 C -0.14 -2.32 8.77 -38.99 -0.34 -2.66 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.41 4.08 8.37 -40.82 -0.34 3.74 16 39 H 0.13 1.52 6.06 -52.49 -0.32 1.21 16 40 H 0.12 1.79 7.52 -52.49 -0.39 1.39 16 41 H 0.12 1.72 6.15 -52.49 -0.32 1.40 16 42 H 0.14 3.00 5.62 -52.48 -0.29 2.71 16 43 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.58 7.66 -51.92 -0.40 0.18 16 46 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 47 H 0.13 1.77 6.28 -52.49 -0.33 1.44 16 LS Contribution 401.81 15.07 6.06 6.06 Total: -1.00 -31.91 401.81 -7.54 -39.45 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.39 Total: 6.57 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.07 Total: -12.55 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.47 Total: -31.46 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.74 Total: -24.49 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.86 Total: 16.43 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.91 -7.54 -39.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493122960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.720 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds