Wall clock time and date at job start Wed Apr 1 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47562 * 2 1 4 4 C 1.42897 * 114.00622 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.55873 * 4.30901 * 4 3 2 6 6 C 1.53068 * 117.51641 * 218.60908 * 4 3 2 7 7 C 1.53002 * 59.98598 * 252.51750 * 6 4 3 8 8 H 1.09004 * 117.50133 * 252.50198 * 7 6 4 9 9 N 1.46495 * 117.49905 * 107.49463 * 7 6 4 10 10 C 1.34776 * 119.99799 * 136.25975 * 9 7 6 11 11 O 1.21726 * 120.00197 * 359.97438 * 10 9 7 12 12 C 1.46258 * 120.00035 * 180.02562 * 10 9 7 13 13 C 1.35026 * 119.99875 * 179.97438 * 12 10 9 14 14 C 1.46965 * 119.99687 * 179.97438 * 13 12 10 15 15 C 1.40029 * 120.08067 * 359.97438 * 14 13 12 16 16 C 1.37643 * 119.99881 * 180.27736 * 15 14 13 17 17 C 1.39059 * 120.16212 * 359.49027 * 16 15 14 18 18 O 1.35617 * 119.92461 * 180.25519 * 17 16 15 19 19 C 1.34773 * 116.99567 * 354.38670 * 18 17 16 20 20 H 1.07992 * 120.00036 * 5.06358 * 19 18 17 21 21 C 1.38709 * 119.99530 * 185.06129 * 19 18 17 22 22 N 1.31522 * 119.99679 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00210 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47253 * 90.00045 * 23 21 19 25 25 H 1.48503 * 109.46822 * 210.00038 * 23 21 19 26 26 H 1.48498 * 109.47075 * 329.99832 * 23 21 19 27 27 C 1.39614 * 120.15894 * 0.51051 * 17 16 15 28 28 O 1.35956 * 120.00569 * 179.76902 * 27 17 16 29 29 C 1.42898 * 117.00449 * 179.97438 * 28 27 17 30 30 C 1.38080 * 119.99804 * 359.74442 * 27 17 16 31 31 H 1.09000 * 109.46667 * 60.00077 * 1 2 3 32 32 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46781 * 300.00340 * 1 2 3 34 34 H 1.08997 * 109.47501 * 239.99587 * 2 1 3 35 35 H 1.09008 * 109.47166 * 119.99589 * 2 1 3 36 36 H 1.09000 * 117.49901 * 145.03455 * 6 4 3 37 37 H 1.08998 * 117.51498 * 359.97438 * 6 4 3 38 38 H 0.96998 * 120.00265 * 316.25978 * 9 7 6 39 39 H 1.07996 * 120.00140 * 359.97438 * 12 10 9 40 40 H 1.08001 * 120.00440 * 359.97438 * 13 12 10 41 41 H 1.07991 * 119.99756 * 0.02562 * 15 14 13 42 42 H 1.08004 * 119.91924 * 179.72807 * 16 15 14 43 43 H 0.96999 * 119.99939 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.46995 * 180.02562 * 29 28 27 45 45 H 1.09009 * 109.46817 * 299.99893 * 29 28 27 46 46 H 1.08996 * 109.47098 * 59.99790 * 29 28 27 47 47 H 1.08001 * 120.08318 * 180.02562 * 30 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9772 0.5197 -0.0729 6 6 4.0518 2.5735 0.8478 7 6 4.0428 2.6874 -0.6780 8 1 4.9913 2.5543 -1.1982 9 7 3.1233 3.6568 -1.2785 10 6 3.5429 4.4502 -2.2839 11 8 4.6861 4.3616 -2.6927 12 6 2.6251 5.4186 -2.8832 13 6 3.0457 6.2138 -3.8901 14 6 2.1233 7.1864 -4.4926 15 6 0.8077 7.2894 -4.0241 16 6 -0.0565 8.1969 -4.5935 17 6 0.3764 9.0205 -5.6270 18 8 -0.4777 9.9165 -6.1810 19 6 -1.7592 9.8779 -5.7654 20 1 -2.0477 9.2120 -4.9657 21 6 -2.7075 10.6935 -6.3650 22 7 -3.9581 10.6555 -5.9599 23 14 -2.2085 11.8449 -7.7488 24 1 -2.3498 11.1446 -9.0506 25 1 -3.0838 13.0444 -7.7345 26 1 -0.7954 12.2609 -7.5613 27 6 1.6866 8.9234 -6.0993 28 8 2.1052 9.7269 -7.1130 29 6 3.4585 9.5740 -7.5456 30 6 2.5576 8.0117 -5.5365 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 5.0062 2.3654 1.3313 37 1 3.3736 3.2203 1.4044 38 1 2.2124 3.7278 -0.9526 39 1 1.6110 5.4975 -2.5204 40 1 4.0600 6.1352 -4.2528 41 1 0.4700 6.6540 -3.2189 42 1 -1.0722 8.2722 -4.2341 43 1 -4.6212 11.2261 -6.3789 44 1 3.6618 10.2731 -8.3568 45 1 4.1314 9.7787 -6.7128 46 1 3.6146 8.5541 -7.8968 47 1 3.5716 7.9358 -5.9005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493122960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:22 Heat of formation + Delta-G solvation = -90.887346 kcal Electronic energy + Delta-G solvation = -28715.446875 eV Core-core repulsion = 24444.533078 eV Total energy + Delta-G solvation = -4270.913797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.42985 -40.86053 -39.46147 -39.40468 -38.16392 -36.79105 -34.68410 -34.16100 -33.58764 -31.60677 -31.32175 -30.24411 -27.94338 -27.33357 -25.23814 -23.79276 -23.49899 -23.12763 -22.87592 -21.84049 -20.59588 -19.92125 -19.52130 -18.45138 -18.29410 -17.66392 -17.07280 -16.73453 -16.56044 -16.43448 -16.30131 -15.94181 -15.79274 -15.57180 -15.43285 -15.28463 -15.02319 -14.86741 -14.24822 -14.10467 -13.85996 -13.61533 -13.41141 -13.30968 -13.29679 -12.98678 -12.96094 -12.75500 -12.56018 -12.39206 -12.14613 -12.11302 -12.09158 -12.05419 -11.81725 -11.43673 -11.06853 -11.05960 -10.62159 -10.31361 -9.66205 -9.49299 -8.61501 -8.53185 -6.20436 -0.37615 0.48663 1.04058 1.30689 1.35087 1.53089 2.07218 2.22551 2.27699 2.48031 2.57507 2.77049 2.92791 2.96575 3.09707 3.64656 3.79740 3.88447 3.91748 4.07552 4.10201 4.16417 4.20983 4.30162 4.34899 4.41230 4.44814 4.48108 4.49205 4.51617 4.53804 4.74059 4.81263 4.87329 4.90404 4.98460 5.04275 5.05941 5.11562 5.28991 5.34204 5.44778 5.52347 5.57829 5.73293 5.76203 5.99622 6.25862 6.53895 6.54979 6.81016 7.22376 7.55586 8.57370 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.001992 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.256180 B =14051.565521 C =15882.757885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.376 6.376 4 C 0.019 3.981 5 H 0.139 0.861 6 C -0.186 4.186 7 C 0.057 3.943 8 H 0.132 0.868 9 N -0.684 5.684 10 C 0.554 3.446 11 O -0.590 6.590 12 C -0.238 4.238 13 C 0.014 3.986 14 C -0.122 4.122 15 C -0.072 4.072 16 C -0.208 4.208 17 C 0.109 3.891 18 O -0.228 6.228 19 C -0.399 4.399 20 H 0.091 0.909 21 C 0.017 3.983 22 N -0.914 5.914 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.265 1.265 26 H -0.267 1.267 27 C 0.050 3.950 28 O -0.341 6.341 29 C 0.018 3.982 30 C -0.132 4.132 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.415 0.585 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.152 0.848 42 H 0.128 0.872 43 H 0.286 0.714 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.015 -19.420 11.119 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.295 6.295 4 C -0.040 4.040 5 H 0.157 0.843 6 C -0.225 4.225 7 C -0.050 4.050 8 H 0.150 0.850 9 N -0.332 5.332 10 C 0.346 3.654 11 O -0.473 6.473 12 C -0.258 4.258 13 C -0.006 4.006 14 C -0.122 4.122 15 C -0.090 4.090 16 C -0.227 4.227 17 C 0.058 3.942 18 O -0.135 6.135 19 C -0.475 4.475 20 H 0.109 0.891 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.786 3.214 24 H -0.192 1.192 25 H -0.189 1.189 26 H -0.192 1.192 27 C 0.005 3.995 28 O -0.256 6.256 29 C -0.077 4.077 30 C -0.151 4.151 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.252 0.748 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.169 0.831 42 H 0.145 0.855 43 H 0.096 0.904 44 H 0.131 0.869 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 16.360 -18.933 10.549 27.155 hybrid contribution -0.655 0.378 -0.216 0.786 sum 15.705 -18.555 10.333 26.414 Atomic orbital electron populations 1.21786 0.93286 1.03385 1.02604 1.22716 0.95889 0.82335 1.01204 1.87772 1.18960 1.28581 1.94149 1.23440 0.82457 0.95012 1.03100 0.84317 1.24059 1.03810 1.01560 0.93057 1.22269 0.95944 0.92594 0.94161 0.85005 1.45021 1.15786 1.37002 1.35421 1.18470 0.87045 0.80686 0.79212 1.90759 1.21274 1.71281 1.63951 1.22794 1.01082 1.00204 1.01751 1.22163 0.97842 0.89238 0.91319 1.18575 0.94083 1.00073 0.99516 1.21279 0.92053 0.96708 0.98932 1.21049 1.01813 1.00388 0.99472 1.19244 0.88909 0.91571 0.94459 1.83556 1.19406 1.49944 1.60589 1.20827 0.81146 1.25673 1.19847 0.89126 1.25186 0.93857 0.98916 1.00341 1.69691 1.01915 1.40401 1.43327 0.85317 0.78833 0.78458 0.78798 1.19244 1.18934 1.19172 1.18239 0.91403 0.96396 0.93453 1.86143 1.32055 1.58242 1.49133 1.23334 0.79668 1.03689 1.00968 1.21297 0.99746 0.96067 0.97978 0.92743 0.89230 0.92165 0.92540 0.91665 0.85314 0.88154 0.74837 0.83570 0.84850 0.83071 0.85456 0.90408 0.86872 0.91458 0.91463 0.82012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.05 0.58 6.53 71.98 0.47 1.05 16 3 O -0.38 -5.77 10.03 -148.98 -1.49 -7.26 16 4 C 0.02 0.24 6.44 30.62 0.20 0.44 16 5 H 0.14 1.06 7.93 -2.39 -0.02 1.04 16 6 C -0.19 -2.25 10.41 30.62 0.32 -1.93 16 7 C 0.06 0.97 6.43 44.99 0.29 1.26 16 8 H 0.13 2.47 7.40 -2.39 -0.02 2.46 16 9 N -0.68 -13.62 5.46 -446.90 -2.44 -16.06 16 10 C 0.55 14.06 7.74 86.33 0.67 14.72 16 11 O -0.59 -18.75 15.80 -4.43 -0.07 -18.82 16 12 C -0.24 -5.61 9.41 23.62 0.22 -5.38 16 13 C 0.01 0.37 9.45 23.82 0.23 0.59 16 14 C -0.12 -3.69 5.87 -20.13 -0.12 -3.81 16 15 C -0.07 -2.36 9.40 22.56 0.21 -2.14 16 16 C -0.21 -8.74 9.14 22.33 0.20 -8.53 16 17 C 0.11 5.13 6.67 22.80 0.15 5.28 16 18 O -0.23 -12.60 8.35 -6.72 -0.06 -12.66 16 19 C -0.40 -23.21 9.94 67.93 0.68 -22.53 16 20 H 0.09 5.38 5.42 -2.91 -0.02 5.36 16 21 C 0.02 0.96 5.49 84.85 0.47 1.43 16 22 N -0.91 -53.68 13.96 21.62 0.30 -53.38 16 23 Si 0.96 46.09 28.62 68.60 1.96 48.05 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 27 C 0.05 2.00 6.70 22.56 0.15 2.16 16 28 O -0.34 -13.17 10.28 -79.08 -0.81 -13.99 16 29 C 0.02 0.43 9.81 113.37 1.11 1.54 16 30 C -0.13 -4.16 8.77 22.65 0.20 -3.96 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.42 7.08 8.37 -92.71 -0.78 6.31 16 39 H 0.15 2.87 6.06 -2.91 -0.02 2.85 16 40 H 0.13 3.32 7.52 -2.91 -0.02 3.30 16 41 H 0.15 3.90 6.15 -2.92 -0.02 3.88 16 42 H 0.13 5.71 5.62 -2.91 -0.02 5.70 16 43 H 0.29 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 1.38 7.66 -2.38 -0.02 1.36 16 46 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 47 H 0.16 3.88 6.28 -2.91 -0.02 3.86 16 Total: -1.00 -74.15 401.81 3.81 -70.34 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.24 Total: 24.43 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 6.18 Total: -20.67 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -2.14 Total: -69.44 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -2.43 Total: -52.72 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.96 Total: 48.05 kcal Total: -74.15 3.81 -70.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493122960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.548 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds