Wall clock time and date at job start Wed Apr 1 2020 04:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46986 * 2 1 4 4 O 1.45204 * 109.46365 * 119.99812 * 2 1 3 5 5 C 1.34229 * 117.00123 * 90.00191 * 4 2 1 6 6 O 1.20823 * 119.99802 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99954 * 179.97438 * 5 4 2 8 8 H 1.09009 * 109.46713 * 60.00352 * 7 5 4 9 9 C 1.52992 * 109.47740 * 300.00628 * 7 5 4 10 10 N 1.46497 * 109.47105 * 179.97438 * 7 5 4 11 11 C 1.34784 * 120.00293 * 205.00696 * 10 7 5 12 12 O 1.21723 * 119.99455 * 359.72181 * 11 10 7 13 13 C 1.46246 * 120.00095 * 180.02562 * 11 10 7 14 14 C 1.35020 * 120.00062 * 172.93553 * 13 11 10 15 15 C 1.46958 * 119.99842 * 348.68356 * 14 13 11 16 16 C 1.40022 * 120.10017 * 316.40122 * 15 14 13 17 17 C 1.37601 * 119.89570 * 179.76677 * 16 15 14 18 18 C 1.39177 * 120.09953 * 0.51480 * 17 16 15 19 19 O 1.35576 * 119.89640 * 179.76331 * 18 17 16 20 20 C 1.34781 * 116.99777 * 174.33018 * 19 18 17 21 21 H 1.08003 * 120.00126 * 5.06423 * 20 19 18 22 22 C 1.38720 * 119.99874 * 185.05715 * 20 19 18 23 23 N 1.31507 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47085 * 60.00381 * 24 22 20 26 26 H 1.48496 * 109.47271 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47352 * 300.00235 * 24 22 20 28 28 C 1.39172 * 120.20456 * 359.73725 * 18 17 16 29 29 C 1.37595 * 120.10266 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.47114 * 60.00157 * 1 2 3 31 31 H 1.08996 * 109.47457 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47332 * 300.00470 * 1 2 3 33 33 H 1.09001 * 109.47009 * 239.99169 * 2 1 3 34 34 H 1.09000 * 109.46811 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47097 * 299.99394 * 3 2 1 36 36 H 1.08996 * 109.47469 * 59.99614 * 3 2 1 37 37 H 1.08999 * 109.47198 * 59.99198 * 9 7 5 38 38 H 1.09000 * 109.47809 * 180.02562 * 9 7 5 39 39 H 1.09009 * 109.46793 * 299.99675 * 9 7 5 40 40 H 0.97000 * 119.99871 * 25.00462 * 10 7 5 41 41 H 1.08004 * 120.00511 * 352.93266 * 13 11 10 42 42 H 1.08004 * 120.00403 * 168.68220 * 14 13 11 43 43 H 1.07991 * 120.05211 * 0.02562 * 16 15 14 44 44 H 1.07995 * 119.95245 * 180.22783 * 17 16 15 45 45 H 0.97005 * 120.00091 * 179.97438 * 23 22 20 46 46 H 1.08000 * 119.94977 * 179.97438 * 28 18 17 47 47 H 1.08001 * 120.04926 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6845 1.1857 5 6 2.2170 -2.0075 1.0853 6 8 1.9973 -2.5749 0.0415 7 6 2.7190 -2.7851 2.2746 8 1 2.0099 -2.6891 3.0970 9 6 4.0791 -2.2341 2.7071 10 7 2.8567 -4.1977 1.9116 11 6 2.7935 -5.1479 2.8654 12 8 2.6271 -4.8319 4.0290 13 6 2.9316 -6.5580 2.5031 14 6 3.0116 -7.4985 3.4686 15 6 3.2103 -7.0989 4.8688 16 6 4.1415 -6.1036 5.1896 17 6 4.3207 -5.7294 6.5016 18 6 3.5859 -6.3461 7.5099 19 8 3.7692 -5.9775 8.8017 20 6 2.9465 -6.5265 9.7173 21 1 2.2388 -7.2865 9.4206 22 6 3.0089 -6.1156 11.0407 23 7 3.8704 -5.1899 11.4019 24 14 1.8692 -6.8769 12.3099 25 1 2.1106 -8.3407 12.3771 26 1 2.1326 -6.2698 13.6392 27 1 0.4579 -6.6252 11.9222 28 6 2.6631 -7.3395 7.1963 29 6 2.4736 -7.7169 5.8867 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.9761 -1.1832 2.9772 38 1 4.4424 -2.7968 3.5670 39 1 4.7882 -2.3301 1.8847 40 1 2.9934 -4.4492 0.9848 41 1 2.9696 -6.8473 1.4631 42 1 2.9295 -8.5444 3.2119 43 1 4.7150 -5.6275 4.4083 44 1 5.0359 -4.9592 6.7497 45 1 3.9137 -4.9022 12.3273 46 1 2.0954 -7.8157 7.9821 47 1 1.7570 -8.4876 5.6442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493552017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:30 Heat of formation + Delta-G solvation = -99.237065 kcal Electronic energy + Delta-G solvation = -29705.414439 eV Core-core repulsion = 25434.138571 eV Total energy + Delta-G solvation = -4271.275868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.10934 -39.75644 -38.73847 -37.37613 -36.51825 -35.05079 -33.55812 -33.07227 -32.15851 -30.88258 -30.12052 -27.93212 -27.72705 -25.59824 -25.29598 -23.56544 -22.03807 -21.72849 -21.03891 -20.55908 -19.64636 -18.03852 -17.86323 -17.38353 -16.79830 -16.71441 -16.36736 -15.50879 -14.96794 -14.71265 -14.58018 -14.43774 -14.30142 -14.10359 -13.73770 -13.54277 -13.44104 -13.28543 -13.11251 -12.84115 -12.72563 -12.68438 -12.49321 -12.40127 -12.19089 -12.15238 -11.83983 -11.68990 -11.37992 -11.34102 -10.98915 -10.95478 -10.69175 -10.64627 -10.62984 -10.41614 -9.56468 -9.43555 -9.20286 -9.14997 -8.69457 -7.93270 -6.86809 -6.45457 -4.01146 1.21817 1.82926 2.11415 2.42206 2.69384 3.13964 3.16567 3.17994 3.28402 3.57675 3.97581 4.20544 4.34500 4.46627 4.69110 4.69631 4.81458 4.89438 5.07499 5.09669 5.12621 5.24063 5.27485 5.31188 5.32465 5.35647 5.48803 5.56260 5.60630 5.64622 5.71863 5.74177 5.84169 5.99590 6.11815 6.25041 6.31504 6.32217 6.45001 6.59208 6.78656 7.03503 7.12366 7.35508 7.36583 7.44678 7.50657 7.58536 7.92234 8.01099 8.43963 9.00108 9.71823 10.72236 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.002192 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.306073 B =12769.155007 C =14020.031497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 C -0.150 4.150 4 O -0.346 6.346 5 C 0.464 3.536 6 O -0.507 6.507 7 C 0.155 3.845 8 H 0.127 0.873 9 C -0.158 4.158 10 N -0.725 5.725 11 C 0.546 3.454 12 O -0.507 6.507 13 C -0.266 4.266 14 C 0.032 3.968 15 C -0.192 4.192 16 C 0.012 3.988 17 C -0.202 4.202 18 C 0.171 3.829 19 O -0.172 6.172 20 C -0.390 4.390 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.269 1.269 28 C -0.251 4.251 29 C -0.040 4.040 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.405 0.595 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.271 0.729 46 H 0.126 0.874 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 6.848 -23.242 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.025 3.975 3 C -0.207 4.207 4 O -0.262 6.262 5 C 0.306 3.694 6 O -0.394 6.394 7 C 0.049 3.951 8 H 0.145 0.855 9 C -0.216 4.216 10 N -0.381 5.381 11 C 0.336 3.664 12 O -0.383 6.383 13 C -0.287 4.287 14 C 0.012 3.988 15 C -0.193 4.193 16 C -0.007 4.007 17 C -0.222 4.222 18 C 0.116 3.884 19 O -0.074 6.074 20 C -0.466 4.466 21 H 0.111 0.889 22 C -0.166 4.166 23 N -0.494 5.494 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.194 1.194 28 C -0.270 4.270 29 C -0.059 4.059 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.241 0.759 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.081 0.919 46 H 0.143 0.857 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.825 7.248 -22.369 23.683 hybrid contribution -0.758 -0.466 -0.176 0.907 sum -3.583 6.782 -22.545 23.814 Atomic orbital electron populations 1.22224 0.94141 1.03221 1.03286 1.22792 0.94763 0.93142 0.86797 1.21898 1.02206 0.93273 1.03350 1.86580 1.76674 1.21656 1.41297 1.23841 0.73937 0.81691 0.89931 1.90637 1.48152 1.69951 1.30701 1.20278 1.00260 0.81342 0.93261 0.85544 1.22132 0.94203 1.02391 1.02893 1.45869 1.76196 1.04053 1.11985 1.18508 0.76655 0.86210 0.84994 1.91012 1.47234 1.82508 1.17562 1.22508 1.14788 0.91909 0.99529 1.22351 0.86338 0.97877 0.92229 1.18299 1.05110 1.04404 0.91450 1.20435 0.94375 0.91659 0.94216 1.20000 1.05915 1.05005 0.91232 1.19532 0.91914 0.91435 0.85490 1.83906 1.51700 1.60465 1.11352 1.21345 1.16598 1.21278 0.87389 0.88938 1.25323 0.97684 0.96348 0.97200 1.70012 1.33573 1.27339 1.18476 0.85770 0.79645 0.79046 0.78921 1.19449 1.20261 1.19448 1.20952 1.05533 1.03864 0.96648 1.20744 0.96459 0.96719 0.91959 0.90600 0.91925 0.91275 0.89682 0.91554 0.90301 0.91133 0.90269 0.89770 0.92083 0.75911 0.85950 0.85931 0.88055 0.86815 0.91897 0.85666 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 9.55 37.16 0.35 -0.88 16 2 C 0.08 0.63 3.18 -26.73 -0.09 0.55 16 3 C -0.15 -0.84 9.57 37.15 0.36 -0.49 16 4 O -0.35 -3.48 9.78 -39.26 -0.38 -3.87 16 5 C 0.46 5.15 7.30 36.00 0.26 5.41 16 6 O -0.51 -6.38 15.06 -18.75 -0.28 -6.67 16 7 C 0.16 1.77 3.08 -69.09 -0.21 1.55 16 8 H 0.13 1.60 7.58 -51.92 -0.39 1.20 16 9 C -0.16 -1.60 9.42 37.15 0.35 -1.25 16 10 N -0.72 -8.53 4.95 -56.38 -0.28 -8.81 16 11 C 0.55 7.92 6.74 -13.04 -0.09 7.83 16 12 O -0.51 -9.42 11.84 5.17 0.06 -9.36 16 13 C -0.27 -3.35 9.90 -37.51 -0.37 -3.72 16 14 C 0.03 0.44 9.80 -37.19 -0.36 0.07 16 15 C -0.19 -3.48 4.54 -105.03 -0.48 -3.95 16 16 C 0.01 0.23 6.60 -39.15 -0.26 -0.03 16 17 C -0.20 -4.55 9.97 -39.47 -0.39 -4.94 16 18 C 0.17 4.31 6.66 -38.89 -0.26 4.05 16 19 O -0.17 -5.02 9.74 0.72 0.01 -5.01 16 20 C -0.39 -11.06 9.48 30.91 0.29 -10.76 16 21 H 0.09 2.43 5.18 -52.48 -0.27 2.15 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 24 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 28 C -0.25 -5.67 9.14 -39.47 -0.36 -6.03 16 29 C -0.04 -0.78 9.78 -39.15 -0.38 -1.16 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.72 7.16 -51.93 -0.37 0.35 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.40 4.12 7.77 -40.82 -0.32 3.81 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 43 H 0.10 1.77 7.02 -52.49 -0.37 1.40 16 44 H 0.11 2.48 8.06 -52.49 -0.42 2.06 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.13 2.80 5.62 -52.49 -0.29 2.51 16 47 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -33.80 400.24 -7.49 -41.29 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.65 Total: 8.11 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.73 Total: -12.76 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.48 Total: -33.42 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.60 Total: -24.90 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.80 -7.49 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493552017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.946 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds