Wall clock time and date at job start Wed Apr 1 2020 04:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46986 * 2 1 4 4 O 1.45204 * 109.46365 * 119.99812 * 2 1 3 5 5 C 1.34229 * 117.00123 * 90.00191 * 4 2 1 6 6 O 1.20823 * 119.99802 * 359.97438 * 5 4 2 7 7 C 1.50696 * 119.99954 * 179.97438 * 5 4 2 8 8 H 1.09009 * 109.46713 * 60.00352 * 7 5 4 9 9 C 1.52992 * 109.47740 * 300.00628 * 7 5 4 10 10 N 1.46497 * 109.47105 * 179.97438 * 7 5 4 11 11 C 1.34784 * 120.00293 * 205.00696 * 10 7 5 12 12 O 1.21723 * 119.99455 * 359.72181 * 11 10 7 13 13 C 1.46246 * 120.00095 * 180.02562 * 11 10 7 14 14 C 1.35020 * 120.00062 * 172.93553 * 13 11 10 15 15 C 1.46958 * 119.99842 * 348.68356 * 14 13 11 16 16 C 1.40022 * 120.10017 * 316.40122 * 15 14 13 17 17 C 1.37601 * 119.89570 * 179.76677 * 16 15 14 18 18 C 1.39177 * 120.09953 * 0.51480 * 17 16 15 19 19 O 1.35576 * 119.89640 * 179.76331 * 18 17 16 20 20 C 1.34781 * 116.99777 * 174.33018 * 19 18 17 21 21 H 1.08003 * 120.00126 * 5.06423 * 20 19 18 22 22 C 1.38720 * 119.99874 * 185.05715 * 20 19 18 23 23 N 1.31507 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00143 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47085 * 60.00381 * 24 22 20 26 26 H 1.48496 * 109.47271 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47352 * 300.00235 * 24 22 20 28 28 C 1.39172 * 120.20456 * 359.73725 * 18 17 16 29 29 C 1.37595 * 120.10266 * 0.02562 * 28 18 17 30 30 H 1.09003 * 109.47114 * 60.00157 * 1 2 3 31 31 H 1.08996 * 109.47457 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47332 * 300.00470 * 1 2 3 33 33 H 1.09001 * 109.47009 * 239.99169 * 2 1 3 34 34 H 1.09000 * 109.46811 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47097 * 299.99394 * 3 2 1 36 36 H 1.08996 * 109.47469 * 59.99614 * 3 2 1 37 37 H 1.08999 * 109.47198 * 59.99198 * 9 7 5 38 38 H 1.09000 * 109.47809 * 180.02562 * 9 7 5 39 39 H 1.09009 * 109.46793 * 299.99675 * 9 7 5 40 40 H 0.97000 * 119.99871 * 25.00462 * 10 7 5 41 41 H 1.08004 * 120.00511 * 352.93266 * 13 11 10 42 42 H 1.08004 * 120.00403 * 168.68220 * 14 13 11 43 43 H 1.07991 * 120.05211 * 0.02562 * 16 15 14 44 44 H 1.07995 * 119.95245 * 180.22783 * 17 16 15 45 45 H 0.97005 * 120.00091 * 179.97438 * 23 22 20 46 46 H 1.08000 * 119.94977 * 179.97438 * 28 18 17 47 47 H 1.08001 * 120.04926 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6845 1.1857 5 6 2.2170 -2.0075 1.0853 6 8 1.9973 -2.5749 0.0415 7 6 2.7190 -2.7851 2.2746 8 1 2.0099 -2.6891 3.0970 9 6 4.0791 -2.2341 2.7071 10 7 2.8567 -4.1977 1.9116 11 6 2.7935 -5.1479 2.8654 12 8 2.6271 -4.8319 4.0290 13 6 2.9316 -6.5580 2.5031 14 6 3.0116 -7.4985 3.4686 15 6 3.2103 -7.0989 4.8688 16 6 4.1415 -6.1036 5.1896 17 6 4.3207 -5.7294 6.5016 18 6 3.5859 -6.3461 7.5099 19 8 3.7692 -5.9775 8.8017 20 6 2.9465 -6.5265 9.7173 21 1 2.2388 -7.2865 9.4206 22 6 3.0089 -6.1156 11.0407 23 7 3.8704 -5.1899 11.4019 24 14 1.8692 -6.8769 12.3099 25 1 2.1106 -8.3407 12.3771 26 1 2.1326 -6.2698 13.6392 27 1 0.4579 -6.6252 11.9222 28 6 2.6631 -7.3395 7.1963 29 6 2.4736 -7.7169 5.8867 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5140 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 3.9761 -1.1832 2.9772 38 1 4.4424 -2.7968 3.5670 39 1 4.7882 -2.3301 1.8847 40 1 2.9934 -4.4492 0.9848 41 1 2.9696 -6.8473 1.4631 42 1 2.9295 -8.5444 3.2119 43 1 4.7150 -5.6275 4.4083 44 1 5.0359 -4.9592 6.7497 45 1 3.9137 -4.9022 12.3273 46 1 2.0954 -7.8157 7.9821 47 1 1.7570 -8.4876 5.6442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493552017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:29 Heat of formation + Delta-G solvation = -120.534179 kcal Electronic energy + Delta-G solvation = -29706.337951 eV Core-core repulsion = 25434.138571 eV Total energy + Delta-G solvation = -4272.199380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01294 -41.05677 -40.37586 -38.44175 -37.96219 -36.17243 -34.58945 -34.23431 -33.92908 -31.93821 -31.79808 -29.45157 -28.23845 -27.42227 -26.35811 -24.74369 -23.53515 -23.00837 -22.16438 -21.49824 -20.85175 -19.81136 -19.09849 -18.63302 -18.18094 -17.78268 -17.32974 -16.57078 -16.36884 -16.24291 -15.95847 -15.72558 -15.52439 -15.27680 -15.14138 -14.77896 -14.65156 -14.48351 -14.32617 -14.13129 -13.81777 -13.64423 -13.54466 -13.39973 -13.27416 -13.19542 -12.99416 -12.77683 -12.73408 -12.60799 -12.34947 -12.22725 -12.12233 -11.95659 -11.69232 -11.49834 -11.22400 -10.98006 -10.72691 -10.41726 -10.23318 -9.57671 -8.54766 -8.46933 -6.13963 -0.02295 0.74020 0.93027 1.12412 1.28153 1.34328 1.47524 1.51198 2.18228 2.31054 2.42647 2.88557 3.22843 3.38710 3.54797 3.76839 3.87836 3.88273 3.95851 4.02565 4.08778 4.10782 4.17915 4.19494 4.56203 4.59027 4.61250 4.64713 4.70207 4.71817 4.78303 4.79270 4.82616 5.07060 5.08904 5.10592 5.13552 5.19166 5.25784 5.27088 5.31754 5.39203 5.46036 5.69517 5.74717 5.85314 6.04059 6.26840 6.48428 6.57339 6.96946 7.31594 7.79190 8.75863 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.002192 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.306073 B =12769.155007 C =14020.031497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 C -0.146 4.146 4 O -0.351 6.351 5 C 0.472 3.528 6 O -0.521 6.521 7 C 0.153 3.847 8 H 0.111 0.889 9 C -0.151 4.151 10 N -0.709 5.709 11 C 0.536 3.464 12 O -0.556 6.556 13 C -0.234 4.234 14 C 0.014 3.986 15 C -0.164 4.164 16 C 0.015 3.985 17 C -0.218 4.218 18 C 0.127 3.873 19 O -0.230 6.230 20 C -0.415 4.415 21 H 0.102 0.898 22 C -0.024 4.024 23 N -0.920 5.920 24 Si 1.020 2.980 25 H -0.255 1.255 26 H -0.270 1.270 27 H -0.259 1.259 28 C -0.260 4.260 29 C -0.047 4.047 30 H 0.098 0.902 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.417 0.583 41 H 0.171 0.829 42 H 0.170 0.830 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.273 0.727 46 H 0.119 0.881 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 5.705 -27.386 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 C -0.203 4.203 4 O -0.267 6.267 5 C 0.315 3.685 6 O -0.410 6.410 7 C 0.046 3.954 8 H 0.128 0.872 9 C -0.209 4.209 10 N -0.365 5.365 11 C 0.328 3.672 12 O -0.435 6.435 13 C -0.254 4.254 14 C -0.006 4.006 15 C -0.164 4.164 16 C -0.003 4.003 17 C -0.238 4.238 18 C 0.076 3.924 19 O -0.136 6.136 20 C -0.491 4.491 21 H 0.119 0.881 22 C -0.222 4.222 23 N -0.558 5.558 24 Si 0.839 3.161 25 H -0.179 1.179 26 H -0.195 1.195 27 H -0.183 1.183 28 C -0.279 4.279 29 C -0.064 4.064 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.255 0.745 41 H 0.188 0.812 42 H 0.188 0.812 43 H 0.140 0.860 44 H 0.121 0.879 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.180 6.104 -26.625 27.633 hybrid contribution -0.354 -0.016 0.496 0.610 sum -4.533 6.088 -26.128 27.208 Atomic orbital electron populations 1.22236 0.93589 1.02373 1.04493 1.23103 0.95323 0.94128 0.85731 1.21923 1.02267 0.91674 1.04433 1.86577 1.76478 1.21048 1.42574 1.23609 0.73561 0.82044 0.89323 1.90627 1.48948 1.70321 1.31144 1.20275 1.00597 0.81401 0.93125 0.87162 1.22065 0.93714 1.02624 1.02547 1.45743 1.74600 1.03968 1.12182 1.19058 0.75986 0.87581 0.84604 1.91024 1.49487 1.83369 1.19607 1.22952 1.10762 0.89977 1.01723 1.22590 0.88159 1.00560 0.89242 1.18873 1.01998 1.01413 0.94151 1.20685 0.94742 0.91848 0.93044 1.20186 1.05928 1.05249 0.92419 1.20035 0.94060 0.93303 0.84977 1.83875 1.53791 1.62994 1.12965 1.21830 1.17213 1.21917 0.88119 0.88066 1.26652 0.99456 0.96827 0.99219 1.70167 1.36491 1.30079 1.19070 0.84632 0.77272 0.78596 0.75590 1.17876 1.19480 1.18335 1.21090 1.05009 1.03410 0.98405 1.21170 0.97128 0.97600 0.90547 0.88334 0.93723 0.91187 0.90065 0.91491 0.88083 0.91163 0.89234 0.91817 0.90508 0.74515 0.81163 0.81236 0.85978 0.87869 0.91777 0.86319 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.55 71.98 0.69 -1.48 16 2 C 0.07 1.01 3.18 30.59 0.10 1.11 16 3 C -0.15 -1.33 9.57 71.98 0.69 -0.64 16 4 O -0.35 -6.64 9.78 -51.41 -0.50 -7.14 16 5 C 0.47 9.81 7.30 71.23 0.52 10.32 16 6 O -0.52 -12.14 15.06 21.97 0.33 -11.80 16 7 C 0.15 3.30 3.08 44.24 0.14 3.44 16 8 H 0.11 2.80 7.58 -2.38 -0.02 2.79 16 9 C -0.15 -2.93 9.42 71.98 0.68 -2.25 16 10 N -0.71 -14.82 4.95 -450.50 -2.23 -17.05 16 11 C 0.54 13.99 6.74 86.32 0.58 14.57 16 12 O -0.56 -20.04 11.84 -4.42 -0.05 -20.10 16 13 C -0.23 -4.59 9.90 23.61 0.23 -4.36 16 14 C 0.01 0.30 9.80 23.82 0.23 0.54 16 15 C -0.16 -5.51 4.54 -20.13 -0.09 -5.61 16 16 C 0.02 0.58 6.60 22.55 0.15 0.73 16 17 C -0.22 -10.37 9.97 22.34 0.22 -10.15 16 18 C 0.13 6.82 6.66 22.72 0.15 6.97 16 19 O -0.23 -14.60 9.74 -20.33 -0.20 -14.80 16 20 C -0.41 -25.15 9.48 67.94 0.64 -24.50 16 21 H 0.10 5.63 5.18 -2.91 -0.02 5.62 16 22 C -0.02 -1.41 5.49 84.86 0.47 -0.94 16 23 N -0.92 -58.09 13.67 21.62 0.30 -57.79 16 24 Si 1.02 44.06 29.55 68.60 2.03 46.09 16 25 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 28 C -0.26 -12.10 9.14 22.34 0.20 -11.90 16 29 C -0.05 -1.70 9.78 22.55 0.22 -1.48 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.23 7.16 -2.39 -0.02 1.22 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.22 16 40 H 0.42 6.94 7.77 -92.71 -0.72 6.22 16 41 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 43 H 0.12 4.10 7.02 -2.92 -0.02 4.08 16 44 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 45 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 46 H 0.12 5.55 5.62 -2.91 -0.02 5.53 16 47 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -81.92 400.24 5.77 -76.15 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.27 Total: 32.08 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 5.82 Total: -25.64 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.93 Total: -74.84 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.42 Total: -53.84 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -81.92 5.77 -76.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493552017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.383 kcal (2) G-P(sol) polarization free energy of solvation -81.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds