Wall clock time and date at job start Wed Apr 1 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46726 * 2 1 4 4 C 1.50702 * 109.46851 * 119.99565 * 2 1 3 5 5 H 1.08004 * 119.99796 * 120.00343 * 4 2 1 6 6 C 1.37878 * 120.00241 * 299.99885 * 4 2 1 7 7 N 1.31515 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00074 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47536 * 90.00060 * 8 6 4 10 10 H 1.48507 * 109.47145 * 210.00364 * 8 6 4 11 11 H 1.48506 * 109.47236 * 329.99858 * 8 6 4 12 12 S 1.81394 * 109.47155 * 239.99764 * 2 1 3 13 13 C 1.76195 * 103.00188 * 68.54563 * 12 2 1 14 14 C 1.38780 * 120.10005 * 5.30819 * 13 12 2 15 15 C 1.38214 * 119.98643 * 180.02562 * 14 13 12 16 16 C 1.38290 * 120.19255 * 359.97438 * 15 14 13 17 17 C 1.38257 * 120.21040 * 359.72517 * 16 15 14 18 18 C 1.38630 * 120.00817 * 0.54912 * 17 16 15 19 19 N 1.40193 * 120.10006 * 179.72125 * 18 17 16 20 20 C 1.34777 * 119.99679 * 29.58965 * 19 18 17 21 21 O 1.21599 * 120.00396 * 356.23653 * 20 19 18 22 22 N 1.34780 * 119.99967 * 176.22944 * 20 19 18 23 23 C 1.46495 * 119.99851 * 179.97438 * 22 20 19 24 24 H 1.08996 * 115.52482 * 350.59016 * 23 22 20 25 25 C 1.53002 * 117.44369 * 205.16261 * 23 22 20 26 26 H 1.09002 * 119.52842 * 4.14101 * 25 23 22 27 27 C 1.54386 * 118.13007 * 159.17685 * 25 23 22 28 28 N 1.48557 * 104.59499 * 87.23137 * 27 25 23 29 29 C 1.48560 * 104.22035 * 320.51913 * 28 27 25 30 30 C 1.53006 * 117.40516 * 135.95230 * 23 22 20 31 31 H 1.08998 * 119.52610 * 355.92170 * 30 23 22 32 32 H 1.08997 * 109.47315 * 186.65113 * 1 2 3 33 33 H 1.09000 * 109.47402 * 306.64980 * 1 2 3 34 34 H 1.09006 * 109.47087 * 66.64573 * 1 2 3 35 35 H 0.96997 * 120.00355 * 179.97438 * 7 6 4 36 36 H 1.07994 * 120.01069 * 359.97438 * 14 13 12 37 37 H 1.07997 * 119.90437 * 179.97438 * 15 14 13 38 38 H 1.08004 * 119.89181 * 180.02562 * 16 15 14 39 39 H 1.08004 * 119.99764 * 180.27453 * 17 16 15 40 40 H 0.96993 * 120.00419 * 209.59111 * 19 18 17 41 41 H 0.96993 * 119.99960 * 0.02562 * 22 20 19 42 42 H 1.09001 * 110.41214 * 206.01377 * 27 25 23 43 43 H 1.09006 * 110.40572 * 328.33653 * 27 25 23 44 44 H 1.00904 * 110.99640 * 80.07456 * 28 27 25 45 45 H 1.09006 * 110.41068 * 158.25726 * 29 28 27 46 46 H 1.09000 * 110.41679 * 280.58381 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1193 4.0080 9 1 3.6303 -0.5438 4.4120 10 1 1.3442 -0.9487 5.1124 11 1 2.4878 -2.5652 3.7124 12 16 2.1346 -0.8552 -1.4810 13 6 1.6747 0.2370 -2.7849 14 6 1.1095 1.4704 -2.4930 15 6 0.7492 2.3251 -3.5176 16 6 0.9506 1.9554 -4.8349 17 6 1.5187 0.7312 -5.1348 18 6 1.8781 -0.1351 -4.1139 19 7 2.4490 -1.3794 -4.4160 20 6 3.1840 -1.5295 -5.5357 21 8 3.2954 -0.6056 -6.3184 22 7 3.7957 -2.7037 -5.7879 23 6 4.5941 -2.8670 -7.0053 24 1 4.5163 -2.0568 -7.7302 25 6 4.7671 -4.2863 -7.5500 26 1 4.2460 -5.1138 -7.0684 27 6 5.1574 -4.4538 -9.0343 28 7 6.6418 -4.3950 -9.0399 29 6 6.9689 -3.3364 -8.0502 30 6 5.9491 -3.5648 -6.8705 31 1 6.3080 -3.8551 -5.8830 32 1 -0.3634 -1.0207 0.1190 33 1 -0.3634 0.6134 0.8245 34 1 -0.3633 0.4074 -0.9435 35 1 0.7080 1.1611 3.4843 36 1 0.9505 1.7620 -1.4654 37 1 0.3090 3.2844 -3.2889 38 1 0.6675 2.6273 -5.6318 39 1 1.6785 0.4478 -6.1647 40 1 2.3151 -2.1322 -3.8193 41 1 3.7067 -3.4408 -5.1638 42 1 4.8137 -5.4170 -9.4114 43 1 4.7407 -3.6421 -9.6307 44 1 7.0398 -5.2810 -8.7666 45 1 7.9891 -3.4584 -7.6863 46 1 6.8395 -2.3488 -8.4929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562751743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:03 Heat of formation + Delta-G solvation = 38.806728 kcal Electronic energy + Delta-G solvation = -27083.366609 eV Core-core repulsion = 23293.122392 eV Total energy + Delta-G solvation = -3790.244218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.82311 -39.84814 -38.21686 -34.97459 -34.68445 -34.13100 -31.83858 -31.11729 -29.95052 -28.94300 -28.63633 -25.41423 -24.09058 -22.80776 -22.42624 -21.57752 -21.29963 -20.77027 -20.43962 -18.55252 -17.92808 -17.27821 -16.60064 -16.15963 -15.72466 -15.48543 -15.20891 -14.87374 -14.68972 -14.32796 -14.18354 -14.02259 -13.60966 -13.41218 -13.19988 -12.84837 -12.63269 -12.55805 -12.17002 -12.01263 -11.87939 -11.76912 -11.47798 -11.27938 -11.10184 -11.06804 -10.62102 -10.53321 -10.38127 -10.36132 -10.14762 -9.84065 -9.48220 -9.27352 -9.13365 -9.06070 -8.99025 -8.57487 -7.96204 -6.59539 -6.27272 -4.36132 1.57748 1.74737 2.26838 2.51867 2.88403 3.18068 3.24822 3.28295 3.38731 3.55955 3.82934 3.93982 4.13447 4.24822 4.26239 4.35162 4.53958 4.65455 4.76456 5.05522 5.15030 5.18612 5.30258 5.35964 5.45686 5.51652 5.56076 5.60123 5.70936 5.83029 5.84485 6.13058 6.20496 6.25108 6.40634 6.52982 6.60243 6.68607 6.71182 6.76424 6.85188 6.87580 6.90766 7.27209 7.34095 7.54652 7.70592 7.80297 7.93832 8.40500 8.62352 9.28168 10.79241 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.002465 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.373022 B =11355.425978 C =13173.145745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.101 3.899 3 H 0.052 0.948 4 C -0.512 4.512 5 H 0.066 0.934 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.907 3.093 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 S -0.176 6.176 13 C -0.091 4.091 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.123 4.123 17 C -0.114 4.114 18 C 0.163 3.837 19 N -0.671 5.671 20 C 0.712 3.288 21 O -0.573 6.573 22 N -0.716 5.716 23 C 0.144 3.856 24 H 0.140 0.860 25 C -0.211 4.211 26 H 0.114 0.886 27 C 0.070 3.930 28 N -0.664 5.664 29 C 0.070 3.930 30 C -0.207 4.207 31 H 0.120 0.880 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.021 0.979 35 H 0.266 0.734 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.410 0.590 41 H 0.400 0.600 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.338 0.662 45 H 0.079 0.921 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -7.799 -18.608 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 H 0.070 0.930 4 C -0.552 4.552 5 H 0.084 0.916 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.197 1.197 12 S 0.071 5.929 13 C -0.207 4.207 14 C -0.140 4.140 15 C -0.140 4.140 16 C -0.145 4.145 17 C -0.136 4.136 18 C 0.062 3.938 19 N -0.318 5.318 20 C 0.413 3.587 21 O -0.450 6.450 22 N -0.369 5.369 23 C 0.037 3.963 24 H 0.157 0.843 25 C -0.233 4.233 26 H 0.132 0.868 27 C -0.059 4.059 28 N -0.289 5.289 29 C -0.060 4.060 30 C -0.229 4.229 31 H 0.138 0.862 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.246 0.754 41 H 0.234 0.766 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.154 0.846 45 H 0.098 0.902 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.588 -7.623 -19.780 21.923 hybrid contribution -0.710 -0.499 2.717 2.852 sum 4.879 -8.122 -17.063 19.517 Atomic orbital electron populations 1.22125 0.96204 1.01578 1.00141 1.21086 0.95622 0.97333 0.88626 0.93040 1.20600 1.32722 1.13258 0.88598 0.91568 1.24886 0.94611 0.94952 0.98860 1.69871 1.35687 1.22469 1.24199 0.86351 0.78665 0.79982 0.81659 1.20343 1.20912 1.19654 1.84997 1.74102 1.32448 1.01367 1.21744 1.04782 0.98887 0.95250 1.21293 0.99503 0.92592 1.00563 1.21040 1.00895 0.99439 0.92632 1.20950 1.00730 0.96559 0.96284 1.21274 0.98612 0.94287 0.99440 1.16962 0.99355 0.85991 0.91450 1.42525 1.52414 1.12332 1.24517 1.15751 0.78291 0.82846 0.81858 1.90879 1.66491 1.39553 1.48061 1.44437 1.53542 1.14148 1.24729 1.21526 0.91260 0.95512 0.88047 0.84287 1.24768 1.03945 0.96920 0.97640 0.86779 1.22582 0.88023 1.02851 0.92491 1.63521 1.07866 1.10031 1.47514 1.23180 0.97623 0.96868 0.88359 1.25590 0.90450 1.06003 1.00901 0.86194 0.93979 0.89089 0.95982 0.92381 0.84418 0.86202 0.86211 0.83713 0.75370 0.76598 0.90118 0.89613 0.84611 0.90202 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.33 37.16 0.31 -2.90 16 2 C 0.10 2.41 1.98 -27.88 -0.06 2.35 16 3 H 0.05 1.33 6.97 -51.92 -0.36 0.96 16 4 C -0.51 -13.40 8.58 -34.44 -0.30 -13.70 16 5 H 0.07 1.74 7.71 -52.48 -0.40 1.34 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -23.68 11.40 55.43 0.63 -23.05 16 8 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 S -0.18 -3.63 20.03 -107.50 -2.15 -5.78 16 13 C -0.09 -1.73 5.98 -38.91 -0.23 -1.96 16 14 C -0.11 -2.12 7.96 -39.39 -0.31 -2.44 16 15 C -0.12 -1.89 10.04 -39.57 -0.40 -2.29 16 16 C -0.12 -1.86 10.04 -39.56 -0.40 -2.26 16 17 C -0.11 -1.89 8.74 -39.43 -0.34 -2.24 16 18 C 0.16 2.84 6.40 -83.42 -0.53 2.31 16 19 N -0.67 -10.00 5.11 -14.06 -0.07 -10.07 16 20 C 0.71 10.24 8.43 -86.91 -0.73 9.50 16 21 O -0.57 -9.85 13.05 5.28 0.07 -9.78 16 22 N -0.72 -7.53 5.57 -58.67 -0.33 -7.86 16 23 C 0.14 1.36 5.92 -67.93 -0.40 0.96 16 24 H 0.14 1.53 7.40 -51.93 -0.38 1.15 16 25 C -0.21 -1.50 6.97 -89.23 -0.62 -2.12 16 26 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 27 C 0.07 0.46 7.27 -2.18 -0.02 0.45 16 28 N -0.66 -4.57 7.63 -107.73 -0.82 -5.40 16 29 C 0.07 0.50 7.33 -0.39 0.00 0.50 16 30 C -0.21 -1.61 7.33 -87.45 -0.64 -2.25 16 31 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 2.24 6.28 -51.93 -0.33 1.92 16 34 H 0.02 0.45 5.90 -51.93 -0.31 0.14 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.14 2.71 4.92 -52.49 -0.26 2.45 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.15 2.40 5.83 -52.48 -0.31 2.09 16 40 H 0.41 5.50 7.82 -40.82 -0.32 5.18 16 41 H 0.40 3.30 8.84 -40.82 -0.36 2.94 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.34 1.88 8.92 -39.29 -0.35 1.53 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -29.26 382.23 -13.02 -42.28 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -6.32 Total: 12.90 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -4.77 Total: -14.31 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.59 Total: -46.38 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.15 Total: -5.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.26 -13.02 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562751743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.087 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds