Wall clock time and date at job start Wed Apr 1 2020 04:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46726 * 2 1 4 4 C 1.50702 * 109.46851 * 119.99565 * 2 1 3 5 5 H 1.08004 * 119.99796 * 120.00343 * 4 2 1 6 6 C 1.37878 * 120.00241 * 299.99885 * 4 2 1 7 7 N 1.31515 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00074 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47536 * 90.00060 * 8 6 4 10 10 H 1.48507 * 109.47145 * 210.00364 * 8 6 4 11 11 H 1.48506 * 109.47236 * 329.99858 * 8 6 4 12 12 S 1.81394 * 109.47155 * 239.99764 * 2 1 3 13 13 C 1.76195 * 103.00188 * 68.54563 * 12 2 1 14 14 C 1.38780 * 120.10005 * 5.30819 * 13 12 2 15 15 C 1.38214 * 119.98643 * 180.02562 * 14 13 12 16 16 C 1.38290 * 120.19255 * 359.97438 * 15 14 13 17 17 C 1.38257 * 120.21040 * 359.72517 * 16 15 14 18 18 C 1.38630 * 120.00817 * 0.54912 * 17 16 15 19 19 N 1.40193 * 120.10006 * 179.72125 * 18 17 16 20 20 C 1.34777 * 119.99679 * 29.58965 * 19 18 17 21 21 O 1.21599 * 120.00396 * 356.23653 * 20 19 18 22 22 N 1.34780 * 119.99967 * 176.22944 * 20 19 18 23 23 C 1.46495 * 119.99851 * 179.97438 * 22 20 19 24 24 H 1.08996 * 115.52482 * 350.59016 * 23 22 20 25 25 C 1.53002 * 117.44369 * 205.16261 * 23 22 20 26 26 H 1.09002 * 119.52842 * 4.14101 * 25 23 22 27 27 C 1.54386 * 118.13007 * 159.17685 * 25 23 22 28 28 N 1.48557 * 104.59499 * 87.23137 * 27 25 23 29 29 C 1.48560 * 104.22035 * 320.51913 * 28 27 25 30 30 C 1.53006 * 117.40516 * 135.95230 * 23 22 20 31 31 H 1.08998 * 119.52610 * 355.92170 * 30 23 22 32 32 H 1.08997 * 109.47315 * 186.65113 * 1 2 3 33 33 H 1.09000 * 109.47402 * 306.64980 * 1 2 3 34 34 H 1.09006 * 109.47087 * 66.64573 * 1 2 3 35 35 H 0.96997 * 120.00355 * 179.97438 * 7 6 4 36 36 H 1.07994 * 120.01069 * 359.97438 * 14 13 12 37 37 H 1.07997 * 119.90437 * 179.97438 * 15 14 13 38 38 H 1.08004 * 119.89181 * 180.02562 * 16 15 14 39 39 H 1.08004 * 119.99764 * 180.27453 * 17 16 15 40 40 H 0.96993 * 120.00419 * 209.59111 * 19 18 17 41 41 H 0.96993 * 119.99960 * 0.02562 * 22 20 19 42 42 H 1.09001 * 110.41214 * 206.01377 * 27 25 23 43 43 H 1.09006 * 110.40572 * 328.33653 * 27 25 23 44 44 H 1.00904 * 110.99640 * 80.07456 * 28 27 25 45 45 H 1.09006 * 110.41068 * 158.25726 * 29 28 27 46 46 H 1.09000 * 110.41679 * 280.58381 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1193 4.0080 9 1 3.6303 -0.5438 4.4120 10 1 1.3442 -0.9487 5.1124 11 1 2.4878 -2.5652 3.7124 12 16 2.1346 -0.8552 -1.4810 13 6 1.6747 0.2370 -2.7849 14 6 1.1095 1.4704 -2.4930 15 6 0.7492 2.3251 -3.5176 16 6 0.9506 1.9554 -4.8349 17 6 1.5187 0.7312 -5.1348 18 6 1.8781 -0.1351 -4.1139 19 7 2.4490 -1.3794 -4.4160 20 6 3.1840 -1.5295 -5.5357 21 8 3.2954 -0.6056 -6.3184 22 7 3.7957 -2.7037 -5.7879 23 6 4.5941 -2.8670 -7.0053 24 1 4.5163 -2.0568 -7.7302 25 6 4.7671 -4.2863 -7.5500 26 1 4.2460 -5.1138 -7.0684 27 6 5.1574 -4.4538 -9.0343 28 7 6.6418 -4.3950 -9.0399 29 6 6.9689 -3.3364 -8.0502 30 6 5.9491 -3.5648 -6.8705 31 1 6.3080 -3.8551 -5.8830 32 1 -0.3634 -1.0207 0.1190 33 1 -0.3634 0.6134 0.8245 34 1 -0.3633 0.4074 -0.9435 35 1 0.7080 1.1611 3.4843 36 1 0.9505 1.7620 -1.4654 37 1 0.3090 3.2844 -3.2889 38 1 0.6675 2.6273 -5.6318 39 1 1.6785 0.4478 -6.1647 40 1 2.3151 -2.1322 -3.8193 41 1 3.7067 -3.4408 -5.1638 42 1 4.8137 -5.4170 -9.4114 43 1 4.7407 -3.6421 -9.6307 44 1 7.0398 -5.2810 -8.7666 45 1 7.9891 -3.4584 -7.6863 46 1 6.8395 -2.3488 -8.4929 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562751743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:02 Heat of formation + Delta-G solvation = 20.614576 kcal Electronic energy + Delta-G solvation = -27084.155480 eV Core-core repulsion = 23293.122392 eV Total energy + Delta-G solvation = -3791.033088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87222 -40.66655 -39.42827 -36.30008 -35.75967 -35.75853 -32.87415 -32.58364 -31.55427 -30.16128 -29.19249 -27.38635 -24.99842 -24.01274 -23.68519 -23.08272 -22.23834 -21.94197 -21.03986 -19.73975 -19.15664 -18.42220 -17.95008 -17.61883 -16.95895 -16.64473 -16.59450 -16.01817 -15.84875 -15.49924 -15.31160 -15.07709 -14.88182 -14.73672 -14.37518 -14.15156 -13.94125 -13.74866 -13.32953 -13.21075 -13.01937 -12.88928 -12.76857 -12.71438 -12.47040 -12.43556 -12.25186 -11.99732 -11.85244 -11.57057 -11.34504 -11.13002 -11.00207 -10.83551 -10.58752 -10.46894 -9.94276 -9.81425 -9.25230 -8.25747 -8.14826 -6.41479 0.25885 0.39431 0.82083 1.36220 1.40817 1.42235 1.52440 1.83385 1.86298 2.37131 2.63632 2.82745 2.90762 3.04880 3.31784 3.57829 3.71510 3.92544 3.94035 4.06198 4.15509 4.18782 4.37346 4.49525 4.53307 4.58054 4.59105 4.61126 4.80067 4.81228 4.85178 4.93347 4.93769 5.00383 5.13303 5.15269 5.30033 5.33959 5.39614 5.48931 5.57754 5.58694 5.61046 5.73331 5.79992 5.99633 6.05461 6.40119 6.60738 6.76427 7.25952 7.29727 8.80593 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.002465 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.373022 B =11355.425978 C =13173.145745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.097 3.903 3 H 0.024 0.976 4 C -0.533 4.533 5 H 0.060 0.940 6 C 0.027 3.973 7 N -0.908 5.908 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.267 1.267 12 S -0.168 6.168 13 C -0.114 4.114 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.108 4.108 17 C -0.123 4.123 18 C 0.162 3.838 19 N -0.670 5.670 20 C 0.709 3.291 21 O -0.603 6.603 22 N -0.700 5.700 23 C 0.119 3.881 24 H 0.120 0.880 25 C -0.188 4.188 26 H 0.128 0.872 27 C 0.070 3.930 28 N -0.669 5.669 29 C 0.070 3.930 30 C -0.201 4.201 31 H 0.125 0.875 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.415 0.585 41 H 0.412 0.588 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.348 0.652 45 H 0.091 0.909 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -8.924 -19.853 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.031 4.031 3 H 0.042 0.958 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.791 3.209 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.192 1.192 12 S 0.078 5.922 13 C -0.230 4.230 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.129 4.129 17 C -0.144 4.144 18 C 0.061 3.939 19 N -0.317 5.317 20 C 0.410 3.590 21 O -0.482 6.482 22 N -0.353 5.353 23 C 0.012 3.988 24 H 0.137 0.863 25 C -0.210 4.210 26 H 0.146 0.854 27 C -0.060 4.060 28 N -0.295 5.295 29 C -0.060 4.060 30 C -0.223 4.223 31 H 0.143 0.857 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.253 0.747 41 H 0.249 0.751 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.165 0.835 45 H 0.110 0.890 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.012 -8.793 -21.047 23.589 hybrid contribution -0.807 -0.109 2.918 3.029 sum 5.204 -8.902 -18.129 20.857 Atomic orbital electron populations 1.21913 0.95628 1.00702 1.00099 1.20837 0.96070 0.96072 0.90126 0.95806 1.20867 1.32995 1.13344 0.89967 0.92225 1.25667 0.94695 0.95583 1.01546 1.69979 1.36337 1.23434 1.24857 0.85413 0.78173 0.79002 0.78266 1.20005 1.20292 1.19189 1.84671 1.74704 1.32447 1.00387 1.21721 1.06955 0.99190 0.95115 1.21288 1.00469 0.93184 1.00502 1.21326 1.00245 1.00019 0.92241 1.21362 0.98476 0.96182 0.96903 1.21458 0.98869 0.94891 0.99232 1.17096 0.98926 0.86966 0.90938 1.42486 1.52485 1.11827 1.24886 1.15872 0.78304 0.83525 0.81292 1.90849 1.67569 1.40899 1.48930 1.44307 1.52551 1.13206 1.25209 1.21583 0.92928 0.96668 0.87662 0.86256 1.24801 1.02716 0.95408 0.98047 0.85380 1.22633 0.87883 1.03549 0.91962 1.63485 1.08057 1.10516 1.47433 1.23174 0.98128 0.96575 0.88156 1.25611 0.90180 1.05108 1.01397 0.85723 0.94536 0.91237 0.94346 0.92230 0.86326 0.83409 0.82607 0.83583 0.74721 0.75119 0.88298 0.90465 0.83515 0.89042 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.33 71.98 0.60 -5.21 16 2 C 0.10 4.78 1.98 29.85 0.06 4.84 16 3 H 0.02 1.29 6.97 -2.39 -0.02 1.28 16 4 C -0.53 -28.47 8.58 25.60 0.22 -28.25 16 5 H 0.06 3.19 7.71 -2.91 -0.02 3.17 16 6 C 0.03 1.43 5.30 84.65 0.45 1.88 16 7 N -0.91 -49.56 11.40 21.45 0.24 -49.32 16 8 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 S -0.17 -7.03 20.03 -56.49 -1.13 -8.16 16 13 C -0.11 -4.36 5.98 22.70 0.14 -4.23 16 14 C -0.13 -4.82 7.96 22.39 0.18 -4.64 16 15 C -0.12 -3.53 10.04 22.28 0.22 -3.30 16 16 C -0.11 -2.99 10.04 22.29 0.22 -2.77 16 17 C -0.12 -3.90 8.74 22.37 0.20 -3.71 16 18 C 0.16 5.57 6.40 38.20 0.24 5.82 16 19 N -0.67 -19.71 5.11 -316.66 -1.62 -21.33 16 20 C 0.71 20.11 8.43 179.05 1.51 21.62 16 21 O -0.60 -20.66 13.05 -4.03 -0.05 -20.71 16 22 N -0.70 -14.12 5.57 -457.80 -2.55 -16.67 16 23 C 0.12 2.15 5.92 44.99 0.27 2.42 16 24 H 0.12 2.68 7.40 -2.39 -0.02 2.66 16 25 C -0.19 -2.30 6.97 -9.90 -0.07 -2.37 16 26 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 27 C 0.07 0.78 7.27 86.45 0.63 1.41 16 28 N -0.67 -7.98 7.63 -494.74 -3.77 -11.75 16 29 C 0.07 0.91 7.33 87.61 0.64 1.55 16 30 C -0.20 -2.81 7.33 -8.74 -0.06 -2.87 16 31 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 3.54 6.28 -2.39 -0.01 3.53 16 34 H 0.04 1.62 5.90 -2.38 -0.01 1.60 16 35 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.12 4.83 4.92 -2.91 -0.01 4.81 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.15 4.68 5.83 -2.91 -0.02 4.66 16 40 H 0.42 10.99 7.82 -92.71 -0.72 10.26 16 41 H 0.41 6.22 8.84 -92.71 -0.82 5.40 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.35 3.05 8.92 -89.69 -0.80 2.25 16 45 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.86 382.23 -2.70 -66.57 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -1.29 Total: 35.35 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 5.44 Total: -17.80 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -7.69 Total: -99.06 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: -7.03 SS G_CDS: -1.13 Total: -8.16 kcal Total: -63.86 -2.70 -66.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562751743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.183 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds